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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=transcript|length=1514bp
CTAAATCATATTTGATTTCATCGAAATTTTGAACAACACTGATTtcggaa
aattggaaaatttattgaaaaaaatataatattgaaatcttcttataaga
aaaatgaatccCCCTTTCTCAATAGATGAATAGGAGAAGATTATGTAATG
TTTTATTCAACTCCGTTTCGTCGATCGATAAAAAGCTTTGATAACAAAAA
ACGACTAAATCATTTAGCGTAAGACTTTGACCGAACGGTTCATCGGAGAG
AGAAACAAGTCAAATTGTGTGATTCTGATATAAAATATAGAGCCACGTGA
ATTGCAATAAGAATAACTTAAGAATACATTGACAATGGGTAAAGATCAAA
AATTAGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGA
GATGGCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGA
GATGCCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACA
TGGAAGTTGAAAATGGCAAACAGGTTGAACTTGCATTATTCGACACTGCG
GGACAAGAAGAATATGACCAACTCCGTATACTCATGTACCCAGATGCCGA
CGTTATCGTTATCTGTTACAGCATTGACAGTCCGGACAGTTTCATGAACG
TCGTCGAAAAATGGGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCA
ATTATTTTATGCGGAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAA
GTTAAAGTTACAAGGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTA
TTCAAGCCGCGCGGGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCG
CTAACAAAAGCAGGAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGC
AATGGCTAAAAATTCtaagaagaaaaataagaaattcaaGAGTGCGAAAT
GTTGTTTGGTTTGATGGAGAATAGAGTTTCTATGAAAGAAATGATGGAGA
TATTTTGTTGTGAAAATCACATGAGAAAAGTTACACGAAAACAAAATGTC
ATTCGAAACCTTGTGTTCATGACAAACGTATTGACAGCTCATCTTGTAGT
CAATGTAAGATTCCATAATGGTAGCTTGACAGCGTGGTGTAatctttctt
aaaatattcaataATACTCATGAATGGGACAACGTGAGACGGTGTAGTGC
AATCCTGTCGCAACATCACAGcaagaaggaaagaaaaatgtgattcattt
tttatttacgAGTATTGCCTCACACATTATTCTCACACCGAAAACCCATA
TTCAAGATGGTGGATGGTGAAAATCCCTAACCAATTTTCCTTTGAGGGTT
AAACCACACACGTTCTAACGACGTGCAGATCCAtacaaaattgacgtcag
aaagACTGATAAAGCTTCGATGAAACATCCGACAACTGAATAGACTATTG
ATAACGAATTAATCAGTTCTATTTAtacgaaaattcaaaatttatgataa
TCAAAGTTACGTNN Run BLAST on NCBI protein sequence of TCONS_00065752-protein >TCONS_00065752-protein ID=TCONS_00065752-protein|Name=TCONS_00065752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MGKDQKLVKEPTVHRRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFD
NYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSP
DSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPV
QIEDGIQAARAIDAVSFVECSALTKAGVMDLFETAARSAMAKNSKKKNKK
FKSAKCCLV Run BLAST on NCBI transcript from alignment at scaffold_444:25711..29711+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=transcript|length=4001bp|location=Sequence derived from alignment at scaffold_444:25711..29711+ (Clytia hemisphaerica)
CTAAATCATATTTGATTTCATCGAAATTTTGAACAACACTGATTtcggaa
aattggaaaatttattgaaaaaaatataatattgaaatcttcttataaga
aaaatgaatccCCCTTTCTCAATAGATGAATAGGAGAAGATTATGTAATG
TTTTATTCAACTCCGTTTCGTCGATCGATAAAAAGCTTTGATAACAAAAA
ACGACTAAATCATTTAGCGTAAGACTTTGACCGAACGGTTCATCGGAGAG
AGAAACAAGTCAAATTGTGTGATTCTGATATAAAATATAGAGCCACGTGA
ATTGCAATAAGAATAACTTAAGAATACATTGACAATGGGTAAAGATCAAA
AATTAGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGA
GATGGCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGA
GATGCCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACA
TGGAAGTTGAAAATGGCAAACAGGTAACTAGACTATGTTTTGTATTTATA
TGTTTTTGGGTGGTTTGGTTTTAAAGAGCAACCACTTAAGTTGATTGAGC
AAGAGTTTTATGTTTTGTCAAAAGTGCTGTGTTGACCTTTCGCAACATAC
GTTTCAATACCAAAGTCCTCAAACTAAAAGAGACATGGTCGATAGAGAGT
TTTCTAGTGAACTGATATTTTAGCAACCCACTGACCTCGAAacaaatttt
aagaagaaattTCAAACAGAAAAAGTCAAACGTTGAGAAAATTACTTGAC
AACAGAAATAAAtattagaaattttgaaatgtcatGACCTAGcagtttat
atttttaaagttatgaaaacaaataaaaatcaGACAGTCATACAAAATTG
AGAAAGAGGTTTATCAAGAAAATCTTTAACTGACAATTAAAAAATAGTAC
TGTACCACATcactcgggtgaaacaaggcatgtcccaaatatattttgcg
tgacgcgcaccgctttcaattattccttaacgttcatatatagctcaaaa
gaatcatatcaaCGAGCGGATTTCAAAAAgcgctgggtcaaaaatttgca
ttaagccaatctcaagatatcggtcaaaaattgattttgacgttataaaa
tacatcgaaaaaacacgtcataagaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNtgggtcaaaaatttgcactaagccaatctcaag
atatcggtcaaaaattgattttgacgttataaaatacatcgaaaaaacac
gtcataagtaaAATTCAattgacgtcattattgaaaaacagcgataactt
taattttattaatgcaatcaacaccaaattttgactggagttgtaaatta
atgattctgaaatatttgttcaaaaattttcagaaaatttgaatgacgtc
atttgttgtcggaaaaaattaaaatacgttaaaaaatgctgacgtcatca
cgaattttcaaattttttttcatgaattattttagaatcgttaatttaca
tctccagtcaaaattttgctttgatagtagtaagttaatcggaattatcg
ccttttttcaataatgacgtcatttaaattgtctttttgacgtgtttttt
cgaagtattttataacgtcaaaatcagtttttggccgatatcttgagatt
ggcttgatgtagacttttgacccagcacttttcgaaatcctctcgttgat
acgattcttttgaactatatatgaaagttaatgaataatgggaagcggtg
tgcgtcacgcaaaatatatttgggacatgccttgtttcacccgagcaAAA
ACACAGACCTGAGAAAGAagtcgaaaaaattgaaattcctgaCATTCCGA
TAAAAACTGTACAGAATAGAAATCTGACAAAGGTTGAAAAGCAATCAATC
CTTTTGTCTGTATTCCTCTCTTATGAATACGATGTCGTTATTAGTTAATG
ACAGTTAGAGACAACAACATTTTTCTTAGTAATAAAAACAGGAACCTAGT
AGGCATTAAAACGGTAGCAAAACCCTAATACAAGAATTTCCGAATGGAAT
CAAAACACCCCtagtttataaaaaacaacaatattCAACAAATAAACTGT
GACTCATGTCAAGATTGCAttatcttttacaaaaaatcttgACATTTTAT
ATTGAGACAATTTTGTTAAAAGATACAGTAGTGAACCAACGTTACTCTtc
ggttccaaataaacgggggggttcgaataaacgggggggttggaaaattt
tctagattttaataaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNagattaataaacgggggggtcctaataaggtcc
gggggggttggaaaattttcgaaaaattaacaagcgggggggcccgttta
tttggaacctaagagtaagtttTTTTGCGGTTTTATTTTTGTGGCGTTTT
GAAGTATTTTAATTGATCTGTTTGTTACAAATTTCAAATATCTCTGGAAA
AATTACTCAATCTAAAATtatgagaaatttcaaaaaaaagaccCAAATac
atttttgtatgaaaaaaaattctatataTCTGATTCCAATTATTCTCTTT
ATCTTTATAGGTTGAACTTGCATTATTCGACACTGCGGGACAAGAAGAAT
ATGACCAACTCCGTATACTCATGTACCCAGATGCCGACGTTATCGTTATC
TGTTACAGCATTGACAGTCCGGACAGTTTCATGAACGTCGTCGAAAAATG
GGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCAATTATTTTATGCG
GAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAAGTTAAAGTTACAA
GGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTATTCAAGCCGCGCG
GGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCGCTAACAAAAGCAG
GAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGCAATGGCTAAAAAT
TCtaagaagaaaaataagaaattcaaGAGTGCGAAATGTTGTTTGGTTTG
ATGGAGAATAGAGTTTCTATGAAAGAAATGATGGAGATATTTTGTTGTGA
AAATCACATGAGAAAAGTTACACGAAAACAAAATGTCATTCGAAACCTTG
TGTTCATGACAAACGTATTGACAGCTCATCTTGTAGTCAATGTAAGATTC
CATAATGGTAGCTTGACAGCGTGGTGTAatctttcttaaaatattcaata
ATACTCATGAATGGGACAACGTGAGACGGTGTAGTGCAATCCTGTCGCAA
CATCACAGcaagaaggaaagaaaaatgtgattcattttttatttacgAGT
ATTGCCTCACACATTATTCTCACACCGAAAACCCATATTCAAGATGGTGG
ATGGTGAAAATCCCTAACCAATTTTCCTTTGAGGGTTAAACCACACACGT
TCTAACGACGTGCAGATCCAtacaaaattgacgtcagaaagACTGATAAA
GCTTCGATGAAACATCCGACAACTGAATAGACTATTGATAACGAATTAAT
CAGTTCTATTTAtacgaaaattcaaaatttatgataaTCAAAGTTACGTN
N Coding sequence (CDS) from alignment at scaffold_444:25711..29711+ >TCONS_00065752 ID=TCONS_00065752|Name=TCONS_00065752|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_444:25711..29711+ (Clytia hemisphaerica)
ATGGGTAAAGATCAAAAATTAGTGAAAGAGCCTACAGTTCATCGACGCAA
GTTGGTCATGGTAGGAGATGGCGCTTGTGGTAAAACAAGTTTATTGTACG
TTTTCACCAAAGATGAGATGCCAACATCTTATGTTCCAACAATCTTTGAC
AATTATGTTGCTGACATGGAAGTTGAAAATGGCAAACAGGTTGAACTTGC
ATTATTCGACACTGCGGGACAAGAAGAATATGACCAACTCCGTATACTCA
TGTACCCAGATGCCGACGTTATCGTTATCTGTTACAGCATTGACAGTCCG
GACAGTTTCATGAACGTCGTCGAAAAATGGGCTCCGGAAGTTAAACATTT
CTGTCCGGGAGTACCAATTATTTTATGCGGAAATAAGAAAGACTTGAGAA
ATAACGAAGATGTTAAGTTAAAGTTACAAGGACATAAACAAGTTCCCGTT
CAAATTGAAGATGGTATTCAAGCCGCGCGGGCGATCGATGCGGTCTCTTT
TGTTGAATGCTCGGCGCTAACAAAAGCAGGAGTAATGGATTTATTTGAAA
CGGCTGCTCGTTCGGCAATGGCTAAAAATTCtaagaagaaaaataagaaa
ttcaaGAGTGCGAAATGTTGTTTGGTTTGAATGGGTAAAGATCAAAAATT
AGTGAAAGAGCCTACAGTTCATCGACGCAAGTTGGTCATGGTAGGAGATG
GCGCTTGTGGTAAAACAAGTTTATTGTACGTTTTCACCAAAGATGAGATG
CCAACATCTTATGTTCCAACAATCTTTGACAATTATGTTGCTGACATGGA
AGTTGAAAATGGCAAACAGGTTGAACTTGCATTATTCGACACTGCGGGAC
AAGAAGAATATGACCAACTCCGTATACTCATGTACCCAGATGCCGACGTT
ATCGTTATCTGTTACAGCATTGACAGTCCGGACAGTTTCATGAACGTCGT
CGAAAAATGGGCTCCGGAAGTTAAACATTTCTGTCCGGGAGTACCAATTA
TTTTATGCGGAAATAAGAAAGACTTGAGAAATAACGAAGATGTTAAGTTA
AAGTTACAAGGACATAAACAAGTTCCCGTTCAAATTGAAGATGGTATTCA
AGCCGCGCGGGCGATCGATGCGGTCTCTTTTGTTGAATGCTCGGCGCTAA
CAAAAGCAGGAGTAATGGATTTATTTGAAACGGCTGCTCGTTCGGCAATG
GCTAAAAATTCtaagaagaaaaataagaaattcaaGAGTGCGAAATGTTG
TTTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065752-exon-scaffold_444-1491911889:25711..26233 | TCONS_00065752-exon-scaffold_444-1491911889:25711..26233 | Clytia hemisphaerica | exon |
| TCONS_00065752-exon-scaffold_444-1510915933:25711..26233 | TCONS_00065752-exon-scaffold_444-1510915933:25711..26233 | Clytia hemisphaerica | exon |
| TCONS_00065752-exon-scaffold_444-1575043694:25711..26233 | TCONS_00065752-exon-scaffold_444-1575043694:25711..26233 | Clytia hemisphaerica | exon |
| TCONS_00065752-exon-scaffold_444-1491911889:28721..29711 | TCONS_00065752-exon-scaffold_444-1491911889:28721..29711 | Clytia hemisphaerica | exon |
| TCONS_00065752-exon-scaffold_444-1510915933:28721..29711 | TCONS_00065752-exon-scaffold_444-1510915933:28721..29711 | Clytia hemisphaerica | exon |
| TCONS_00065752-exon-scaffold_444-1575043694:28721..29711 | TCONS_00065752-exon-scaffold_444-1575043694:28721..29711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_444 | supercontig | scaffold_444:25711..29711 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007264 | small GTPase mediated signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00065752 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1) HSP 1 Score: 231.106 bits (588), Expect = 3.223e-72 Identity = 111/169 (65.68%), Postives = 135/169 (79.88%), Query Frame = 2
Query: 377 RRKLVMVGDGACGKTSLLYVFTKDEMPTSYVPTIFDNYVADMEVENGKQVELALFDTAGQEEYDQLRILMYPDADVIVICYSIDSPDSFMNVVEKWAPEVKHFCPGVPIILCGNKKDLRNNEDVKLKLQGHKQVPVQIEDGIQAARAIDAVSFVECSALTKAGVMDLFE 883
R+KLV+VGDGACGKT LL VF+KD+ P YVPT+F+NYVAD+EV +GKQVELAL+DTAGQE+YD+LR L YPD DVI++C+SIDSPDS N+ EKW PEVKHFCP VPIIL GNKKDLRN+E + +L KQ PV+ E+G A I A ++ECSA TK GV ++FE
Sbjct: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
The following BLAST results are available for this feature:
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