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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065562 ID=TCONS_00065562|Name=TCONS_00065562|organism=Clytia hemisphaerica|type=transcript|length=3057bpRun BLAST on NCBI protein sequence of TCONS_00065562-protein >TCONS_00065562-protein ID=TCONS_00065562-protein|Name=TCONS_00065562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp MISLVVLRLEIQYADQNIQDFYYSAEQYFERHTELCTETELNNSGLRLLSRun BLAST on NCBI transcript from alignment at scaffold_440:352717..365887+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065562 ID=TCONS_00065562|Name=TCONS_00065562|organism=Clytia hemisphaerica|type=transcript|length=13171bp|location=Sequence derived from alignment at scaffold_440:352717..365887+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:352717..365887+ >TCONS_00065562 ID=TCONS_00065562|Name=TCONS_00065562|organism=Clytia hemisphaerica|type=CDS|length=30672bp|location=Sequence derived from alignment at scaffold_440:352717..365887+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065562 vs. Swiss-Prot (Human)
Match: BRAP (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2) HSP 1 Score: 454.136 bits (1167), Expect = 1.020e-146 Identity = 247/564 (43.79%), Postives = 339/564 (60.11%), Query Frame = 2
Query: 254 ISLVVLRLEIQYADQNIQDFYYSAEQYFERHTELCTETELNNSGLRLLSEQVDIPEVFKEIPELHQGERKYQNIVVETYYPKQEAGGMEGAERRSDSLS--------EGKELTG-------------IKYFSGNPSVERTQGILHLYKDKYLTPLDPDFPRSELICIIAVPAKYTCRDLQDFVAPAGETIQYMKILRDARPNQYMILIKFRDQLSADSFYQEFEGKPYNLLENEVAHLVYVSKVETIPTSEGGYMPVTGLTELPNCPVCLERMDESVAGILTVLCNHSFHNECLSKWQDDCCPVCRYRQTPEEEVDQTCFECDAKESLWICLICGYVGCGRYQEQHAFQHYKQTAHTFSMHLGNQRVWDYAGDNYVHRLLQSKGDGKLVAVNSEGTEIDNEKVDSLTLEYTYLLTNQLESQRQFFEQKIGFLEKEAFERITRLEENVHTSRIRNEKTETKLQSVXXXXXXXXXXXXXVVGKATKLGKELKDEKQMNEFLRVNQGDWYKKVSDLEKRLVNLEEEKNRQLIELQSEITDLMKHLDFQSAINSSAGSVKEEIQGGHL 1882
+SLVV+RLE+ F +SA E E +T L ++ L + P I H G R+ ++++ET + ER+S S KE I +FSGNPSVE GI+HLYK +T L D RS ++CI+ VPA T DL FVAP E I+ MKI+RD+ PNQYM+LIKFR Q ADSFY G+ +N +E++V LVYV + E + + +G +PV LTELP C VCLERMDESV GILT LCNHSFH++CL +W D CPVCRY QTPE + CFEC +E+LWICLICG++GCGRY +HA++H+++T HT++M L N RVWDYAGDNYVHRL+ SK DGK+V EG EK+D+L LEY+YLLT+QLESQR ++E KI +EK+ E I ++ + + + E KL + KEK+++E+K + K KL ELK+E++MN+ LR NQ K+ + E+ L ++K+ Q+ E+Q ++ D+M +L+ Q IN ++EIQ G +
Sbjct: 3 VSLVVIRLELAEHSPVPAGFGFSA-AAGEMSDEEIKKTTLASAVACLEGKS---PGEKVAIIHQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSKQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQI 562 The following BLAST results are available for this feature:
BLAST of TCONS_00065562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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