TCONS_00065562-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065562-protein
Unique NameTCONS_00065562-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065562-protein ID=TCONS_00065562-protein|Name=TCONS_00065562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MISLVVLRLEIQYADQNIQDFYYSAEQYFERHTELCTETELNNSGLRLLS
EQVDIPEVFKEIPELHQGERKYQNIVVETYYPKQEAGGMEGAERRSDSLS
EGKELTGIKYFSGNPSVERTQGILHLYKDKYLTPLDPDFPRSELICIIAV
PAKYTCRDLQDFVAPAGETIQYMKILRDARPNQYMILIKFRDQLSADSFY
QEFEGKPYNLLENEVAHLVYVSKVETIPTSEGGYMPVTGLTELPNCPVCL
ERMDESVAGILTVLCNHSFHNECLSKWQDDCCPVCRYRQTPEEEVDQTCF
ECDAKESLWICLICGYVGCGRYQEQHAFQHYKQTAHTFSMHLGNQRVWDY
AGDNYVHRLLQSKGDGKLVAVNSEGTEIDNEKVDSLTLEYTYLLTNQLES
QRQFFEQKIGFLEKEAFERITRLEENVHTSRIRNEKTETKLQSVEKEKKN
LEKKYENVVGKATKLGKELKDEKQMNEFLRVNQGDWYKKVSDLEKRLVNL
EEEKNRQLIELQSEITDLMKHLDFQSAINSSAGSVKEEIQGGHLFTEQGT
PSPSKGGARSKTKGRKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041088XLOC_041088Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065562TCONS_00065562Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR001841Znf_RING
IPR011422BRAP2
IPR013083Znf_RING/FYVE/PHD
IPR034932BRAP2_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 395..415
NoneNo IPR availableCOILSCoilCoilcoord: 483..521
NoneNo IPR availableCOILSCoilCoilcoord: 420..468
NoneNo IPR availableGENE3D1.10.1170.10coord: 12..276
e-value: 1.3E-8
score: 34.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 533..567
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 262..368
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 245..291
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 298..347
e-value: 1.7E-22
score: 90.8
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 299..358
e-value: 5.5E-21
score: 74.6
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 297..358
score: 19.43
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 246..285
e-value: 5.3E-6
score: 36.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 245..286
e-value: 6.8E-8
score: 32.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 246..286
score: 13.02
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 246..286
e-value: 1.09045E-9
score: 53.6036
IPR011422BRCA1-associated 2PFAMPF07576BRAP2coord: 141..229
e-value: 1.7E-29
score: 101.8
IPR011422BRCA1-associated 2PRODOMPD017029coord: 108..225
e-value: 2.0E-31
score: 343.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 277..359
e-value: 1.3E-23
score: 82.5
IPR034932BRAP2, RNA recognition motifCDDcd12718RRM_BRAP2coord: 142..225
e-value: 5.27119E-37
score: 131.225

Blast
[Close]
BLAST of TCONS_00065562-protein vs. Swiss-Prot (Human)
Match: BRAP (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2)

HSP 1 Score: 466.077 bits (1198), Expect = 8.377e-159
Identity = 247/564 (43.79%), Postives = 339/564 (60.11%), Query Frame = 0 
Query:    2 ISLVVLRLEIQYADQNIQDFYYSAEQYFERHTELCTETELNNSGLRLLSEQVDIPEVFKEIPELHQGERKYQNIVVETYYPKQEAGGMEGAERRSDSLS--------EGKELTG-------------IKYFSGNPSVERTQGILHLYKDKYLTPLDPDFPRSELICIIAVPAKYTCRDLQDFVAPAGETIQYMKILRDARPNQYMILIKFRDQLSADSFYQEFEGKPYNLLENEVAHLVYVSKVETIPTSEGGYMPVTGLTELPNCPVCLERMDESVAGILTVLCNHSFHNECLSKWQDDCCPVCRYRQTPEEEVDQTCFECDAKESLWICLICGYVGCGRYQEQHAFQHYKQTAHTFSMHLGNQRVWDYAGDNYVHRLLQSKGDGKLVAVNSEGTEIDNEKVDSLTLEYTYLLTNQLESQRQFFEQKIGFLEKEAFERITRLEENVHTSRIRNEKTETKLQSVEKEKKNLEKKYENVVGKATKLGKELKDEKQMNEFLRVNQGDWYKKVSDLEKRLVNLEEEKNRQLIELQSEITDLMKHLDFQSAINSSAGSVKEEIQGGHL 544
            +SLVV+RLE+         F +SA    E   E   +T L ++   L  +    P     I   H G R+  ++++ET     +       ER+S   S          KE                I +FSGNPSVE   GI+HLYK   +T L  D  RS ++CI+ VPA  T  DL  FVAP  E I+ MKI+RD+ PNQYM+LIKFR Q  ADSFY    G+ +N +E++V  LVYV + E + + +G  +PV  LTELP C VCLERMDESV GILT LCNHSFH++CL +W D  CPVCRY QTPE   +  CFEC  +E+LWICLICG++GCGRY  +HA++H+++T HT++M L N RVWDYAGDNYVHRL+ SK DGK+V    EG     EK+D+L LEY+YLLT+QLESQR ++E KI  +EK+  E I  ++     +  + +  E KL  + KEK+++E+K   +  K  KL  ELK+E++MN+ LR NQ     K+ + E+ L    ++K+ Q+ E+Q ++ D+M +L+ Q  IN      ++EIQ G +
Sbjct:    3 VSLVVIRLELAEHSPVPAGFGFSA-AAGEMSDEEIKKTTLASAVACLEGKS---PGEKVAIIHQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSKQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQI 562
The following BLAST results are available for this feature:
BLAST of TCONS_00065562-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAP8.377e-15943.79BRCA1-associated protein OS=Homo sapiens GN=BRAP P... [more]
back to top