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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065553 ID=TCONS_00065553|Name=TCONS_00065553|organism=Clytia hemisphaerica|type=transcript|length=1645bp
GGCCAATTCGTTGTGAAAGTGTCCAATTAAACGAATTTGTCGAGTGGTAT
GGGTAGTCCAGGATTCATGTGTTTTAAGACTACAAAGGGAACTTCAGTAC
GCAACCTTGCtacattttcataaaattctGTTATTTTCTATAAATGCAAA
GGGCTTTGGGGATGTGCTAAGATAAGATATATTACAAAGATACACTGTAT
GGAATAACAAATAAAATGGAGTTTCTTATATGGTTTCTGACCAATATAAC
TTTGGTGTATTCCCAATGGTTTTCTGGCGAAGAGAAATTACAAGCCACAA
CAAACACTGATAAAGAGGATgtttcaaaaccttttcagGCAACTTCGCCT
AttcaatgcattttgaaatgtcaaagAAGGTCGAGGGAAGGTTATTTTGT
CGAAAATAAAGAGCAatgtttttgcttgaaaagtgAAGATCAGAAAATAT
TATCGGATGAGAAAGTCAATGGAATATTTTACAAGCCCGTCACTGTGGAA
AAACCGATTGACTCGTGCAAAGCTGAAAGAAAAAGATGCCTTGATTGTCA
ATCTGATTTTTATGAACTTGATATCGgggaagatgaaaagaaaaatgtct
TCTGCAATTTCGAAAAAGATGAGGGGAATGGAGGTGTTGGTGATGGGTCG
TGCATGGCTATCAAGGAACATTGTATAGGCTGTTCATCGGgattatatta
ttttgaaattctcGGTATAGCAACAGAAGTTTTTTGTGAGATGACAGAGG
ATGGAGGCGGGTGGATGGCTATTGTGAACATCACCTTCGACGACAATAGC
CTGCTGGCCAACGCAATTGCAGTTCTTGAGAAACCATCATTACTCAACCA
GCTCAATAACATTCAAAGCGGTCGCTTTTTATTAGCATCCGATGAATTGA
AAAAGCTATTCACCAATGGAGGTTACACAGAGCTACGAGTTAAATGCTTT
AAACCATACCATGGTCGCACACTCCATGCAGCCATAACAGGAACTAAATC
GTTGACATATCTAAGAGGAAAAGGAGTGGTTCGAGGTGACGGTGGTCATT
GTCAAGGTAGTCATTGTGGTCTATGTGGTGAAGTACGATTCCTGGCTGAT
GACACCTCAATCATGGGTCAACGAAACTGCTCACAATTAGGCATGGGAAT
GGAGATAACAACAAGCCTTTATGACCACGCTTTCTTTGTATGGGGTGAGC
GACATTGGTCGTTTTTGAACAAACATGAAGATGGTTTTGTGCGATTTGAA
TGCGACGATTTTAGCGCTGATTTTAATGGTGAATGGATGGTCTATGTCCG
TTAGTTATTGCCCAAGAGGTTATACAGTCAACttcctctaattcgaacct
ctccTATTCGCGAATCTTTCTAGAATTCAATTTGAATATTTGTACCCTCA
GCTAGAGAGCAATATAAAATgctttctgtaattcaaatatttctcaaatt
cgaagaaaattcttggactcttgaatcgaattaaagagagtcaactgtac
atTAATTAATCGTAATCGTGAATCGAGTCATTTACTCGATTCCATATTca
ttacgcacggagcgagcgttagcgagcggagtgcgactcttttggcaaac
gcatgcgcgtaagcaaaatttacaaaatttcaatgatatgcgggt Run BLAST on NCBI protein sequence of TCONS_00065553-protein >TCONS_00065553-protein ID=TCONS_00065553-protein|Name=TCONS_00065553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MEFLIWFLTNITLVYSQWFSGEEKLQATTNTDKEDVSKPFQATSPIQCIL
KCQRRSREGYFVENKEQCFCLKSEDQKILSDEKVNGIFYKPVTVEKPIDS
CKAERKRCLDCQSDFYELDIGEDEKKNVFCNFEKDEGNGGVGDGSCMAIK
EHCIGCSSGLYYFEILGIATEVFCEMTEDGGGWMAIVNITFDDNSLLANA
IAVLEKPSLLNQLNNIQSGRFLLASDELKKLFTNGGYTELRVKCFKPYHG
RTLHAAITGTKSLTYLRGKGVVRGDGGHCQGSHCGLCGEVRFLADDTSIM
GQRNCSQLGMGMEITTSLYDHAFFVWGERHWSFLNKHEDGFVRFECDDFS
ADFNGEWMVYVR Run BLAST on NCBI transcript from alignment at scaffold_440:198298..201723+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065553 ID=TCONS_00065553|Name=TCONS_00065553|organism=Clytia hemisphaerica|type=transcript|length=3426bp|location=Sequence derived from alignment at scaffold_440:198298..201723+ (Clytia hemisphaerica)
GGCCAATTCGTTGTGAAAGTGTCCAATTAAACGAATTTGTCGAGTGGTAT
GGGTAGTCCAGGATTCATGTGTTTTAAGACTACAAAGGGAACTTCAGTAC
GCAACCTTGCtacattttcataaaattctGTTATTTTCTATAAATGCAAA
GGGCTTTGGGGATGTGCTAAGATAAGATATATTACAAAGATACACTGTAT
GGAATAACAAATAAAATGGAGTTTCTTATATGGTTTCTGACCAATATAAC
TTTGGTGTATTCCCAATGGTTTTCTGGCGAAGAGAAATTACAAGCCACAA
CAAACACTGATAAAGAGGATgtttcaaaaccttttcagGCAACTTCGCCT
AttcaatgcattttgaaatgtcaaagAAGGTCGAGGGAAGGTTATTTTGT
CGAAAATAAAGAGCAatgtttttgcttgaaaagtgAAGATCAGAAAATAT
TATCGGATGAGAAAGTCAATGGAATATTTTACAAGCCCGTCACTGTGAGT
AATGCAATTTTcgttattttatttatttatattttatccCATTCCAGACT
TCAAGACTTCacaaagttataattttctatatttttgcaaaaagagtTTC
CAGTTGTCGATACACTATTAGCAAAATAAAAGGTCAGGTGCCCAAGATTG
ATAATCCGCTTTTTACGGTCTTTGTACAAGATAATAATTTCATATCTCAC
TCTTGTAATCGAAGGATATACCAACGCCAAAAAATGTTCACCTACAgtaa
aagtcataatatttgagaaaaaaggggaattctcacgaaatcttatagcc
acaaacgatttggaagcggtATAACTTAgattggaagggtagagttttaa
tattagacttaagactaggctctcaggatccaaaagttcaagaataaaGA
ATgatccaatagggctcagaatatactCTGGAAGTCTATTAACCCCTCTC
GAATTGAACTAATCGATTAGATtcatcaattagcccaaaagtgactttct
cgcccgaactttaaattgctaaaaacgtTATCTGATATATGGCAggttgg
cggccgcccacgctaaagatCTAAAGGGAGTGGGTTAATTTCCCATTGGA
GAGGAATAATAGTCCTTCGATGTGCCGCATCCTAAGTCGGGTTCAACATT
CCTTGCCCGCAAACCtagaaatatttcggttggacccgccaatccccgaa
aacgagggctgggttaccagaacTCCtgctgcaaaatttttgacgtgaTC
TCGcaaaaattccgtaatgtaaaccttccagatgttgaaaattttcccga
ccttcagagctttagcgtatcggatgaaaatttcaccatctgggtgccag
ataactaAAAACgaagaattaaccaaaattttcaatataatttGACCAAG
ATTGTATACCGCTTAAATCTTAACCCTTAGACGGCAAAAGGCGTATATAT
ACGtcttgaaaaggtcattttaccgatacacagtcttttggtcataactc
ctgaccacttgagattcagagaaaaagaattcgctattttttgtagctga
gagaaaaaGCTTTCCagcgataccaaagttgatacctaaATCATTTGTCC
TGGTCAAGAAATggctttgaaagaataaatttccagaaaaaaatgatgaa
ctttttggcctttttcaaaaaagttttgaaaggtTAAGTTAGGTTAAGTT
CCAAGGTTCCAAGGTTTcgccattaaaaaaaaaatgtgttgtATTGTCTA
ACTAACTAACTTTCATTTCTAGGTGGAAAAACCGATTGACTCGTGCAAAG
CTGAAAGAAAAAGATGCCTTGATTGTCAATCTGATTTTTATGAACTTGAT
ATCGgggaagatgaaaagaaaaatgtctTCTGCAATTTCGAAAAAGATGA
GGGGAATGGAGGTGTTGGTGATGGGTCGTGCATGGCTATCAAGGAACATT
GTATAGGCTGTTCATCGGgattatattattttgaaattctcGGTATAGCA
ACAGAAGTTTTTTGTGAGATGACAGAGGATGGAGGtatgtttattaaatt
ttcaaGTTGATTTGCAAAGAGAATTTACAGTAAGATTTAAGTAATTCCAG
GGTTTCACTCATTCTTTGGCTAGGACTAATAAGTATATAATCGCCCGCCT
TTGCTAGCCAGGACCGATTAACTATTTGCGACGTAAAGAGGCCAGTGTGC
TAAATTTGGAGCTTTCGTTGATTTCCACGTCAACGTCCTtctatcagaat
catcaatagctaAAGGGGGACAGAAAAACCTACTTAGGTTCGAAGAtgga
aaatctcaaaaacacGCTTTTTTAAACTAATAGGCGGGTGGATGGCTATT
GTGAACATCACCTTCGACGACAATAGCCTGCTGGCCAACGCAATTGCAGT
TCTTGAGAAACCATCATTACTCAACCAGCTCAATAACATTCAAAGCGGTC
GCTTTTTATTAGCATCCGATGAATTGAAAAAGCTATTCACCAATGGAGGT
TACACAGAGCTACGAGTTAAATGCTTTAAAGTATGTGTTGCTTTTCTTAC
TTGATTTCTTGTTTAGTCTTTCgcaattctattttttttaccAGTGAACA
GGATCCTACTAGATAAGTTTGTAAATTGACAAGTTTTCGCACAAAACTCT
GGTTACTTGTTTCTCGTGTATGTTTTGAAGTAAGCATAATATTCCATCGA
TATTTTGTCTAAATTTCGCTTTATCTATATCCAGCCATACCATGGTCGCA
CACTCCATGCAGCCATAACAGGAACTAAATCGTTGACATATCTAAGAGGA
AAAGGAGTGGTTCGAGGTGACGGTGGTCATTGTCAAGGTAGTCATTGTGG
TCTATGTGGTGAAGTACGATTCCTGGCTGATGACACCTCAATCATGGGTC
AACGAAACTGCTCACAATTAGGCATGGGAATGGAGATAACAACAAGCCTT
TATGACCACGCTTTCTTTGTATGGGGTGAGCGACATTGGTCGTTTTTGAA
CAAACATGAAGATGGTTTTGTGCGATTTGAATGCGACGATTTTAGCGCTG
ATTTTAATGGTGAATGGATGGTCTATGTCCGTTAGTTATTGCCCAAGAGG
TTATACAGTCAACttcctctaattcgaacctctccTATTCGCGAATCTTT
CTAGAATTCAATTTGAATATTTGTACCCTCAGCTAGAGAGCAATATAAAA
Tgctttctgtaattcaaatatttctcaaattcgaagaaaattcttggact
cttgaatcgaattaaagagagtcaactgtacatTAATTAATCGTAATCGT
GAATCGAGTCATTTACTCGATTCCATATTcattacgcacggagcgagcgt
tagcgagcggagtgcgactcttttggcaaacgcatgcgcgtaagcaaaat
ttacaaaatttcaatgatatgcgggt Coding sequence (CDS) from alignment at scaffold_440:198298..201723+ >TCONS_00065553 ID=TCONS_00065553|Name=TCONS_00065553|organism=Clytia hemisphaerica|type=CDS|length=4356bp|location=Sequence derived from alignment at scaffold_440:198298..201723+ (Clytia hemisphaerica)
ATGGAGTTTCTTATATGGTTTCTGACCAATATAACTTTGGTGTATTCCCA
ATGGTTTTCTGGCGAAGAGAAATTACAAGCCACAACAAACACTGATAAAG
AGGATgtttcaaaaccttttcagGCAACTTCGCCTAttcaatgcattttg
aaatgtcaaagAAGGTCGAGGGAAGGTTATTTTGTCGAAAATAAAGAGCA
atgtttttgcttgaaaagtgAAGATCAGAAAATATTATCGGATGAGAAAG
TCAATGGAATATTTTACAAGCCCGTCACTGTGGAAAAACCGATTGACTCG
TGCAAAGCTGAAAGAAAAAGATGCCTTGATTGTCAATCTGATTTTTATGA
ACTTGATATCGgggaagatgaaaagaaaaatgtctTCTGCAATTTCGAAA
AAGATGAGGGGAATGGAGGTGTTGGTGATGGGTCGTGCATGGCTATCAAG
GAACATTGTATAGGCTGTTCATCGGgattatattattttgaaattctcGG
TATAGCAACAGAAGTTTTTTGTGAGATGACAGAGGATGGAGGCGGGTGGA
TGGCTATTGTGAACATCACCTTCGACGACAATAGCCTGCTGGCCAACGCA
ATTGCAGTTCTTGAGAAACCATCATTACTCAACCAGCTCAATAACATTCA
AAGCGGTCGCTTTTTATTAGCATCCGATGAATTGAAAAAGCTATTCACCA
ATGGAGGTTACACAGAGCTACGAGTTAAATGCTTTAAACCATACCATGGT
CGCACACTCCATGCAGCCATAACAGGAACTAAATCGTTGACATATCTAAG
AGGAAAAGGAGTGGTTCGAGGTGACGGTGGTCATTGTCAAGGTAGTCATT
GTGGTCTATGTGGTGAAGTACGATTCCTGGCTGATGACACCTCAATCATG
GGTCAACGAAACTGCTCACAATTAGGCATGGGAATGGAGATAACAACAAG
CCTTTATGACCACGCTTTCTTTGTATGGGGTGAGCGACATTGGTCGTTTT
TGAACAAACATGAAGATGGTTTTGTGCGATTTGAATGCGACGATTTTAGC
GCTGATTTTAATGGTGAATGGATGGTCTATGTCCGTTAGATGGAGTTTCT
TATATGGTTTCTGACCAATATAACTTTGGTGTATTCCCAATGGTTTTCTG
GCGAAGAGAAATTACAAGCCACAACAAACACTGATAAAGAGGATgtttca
aaaccttttcagGCAACTTCGCCTAttcaatgcattttgaaatgtcaaag
AAGGTCGAGGGAAGGTTATTTTGTCGAAAATAAAGAGCAatgtttttgct
tgaaaagtgAAGATCAGAAAATATTATCGGATGAGAAAGTCAATGGAATA
TTTTACAAGCCCGTCACTGTGGAAAAACCGATTGACTCGTGCAAAGCTGA
AAGAAAAAGATGCCTTGATTGTCAATCTGATTTTTATGAACTTGATATCG
gggaagatgaaaagaaaaatgtctTCTGCAATTTCGAAAAAGATGAGGGG
AATGGAGGTGTTGGTGATGGGTCGTGCATGGCTATCAAGGAACATTGTAT
AGGCTGTTCATCGGgattatattattttgaaattctcGGTATAGCAACAG
AAGTTTTTTGTGAGATGACAGAGGATGGAGGCGGGTGGATGGCTATTGTG
AACATCACCTTCGACGACAATAGCCTGCTGGCCAACGCAATTGCAGTTCT
TGAGAAACCATCATTACTCAACCAGCTCAATAACATTCAAAGCGGTCGCT
TTTTATTAGCATCCGATGAATTGAAAAAGCTATTCACCAATGGAGGTTAC
ACAGAGCTACGAGTTAAATGCTTTAAACCATACCATGGTCGCACACTCCA
TGCAGCCATAACAGGAACTAAATCGTTGACATATCTAAGAGGAAAAGGAG
TGGTTCGAGGTGACGGTGGTCATTGTCAAGGTAGTCATTGTGGTCTATGT
GGTGAAGTACGATTCCTGGCTGATGACACCTCAATCATGGGTCAACGAAA
CTGCTCACAATTAGGCATGGGAATGGAGATAACAACAAGCCTTTATGACC
ACGCTTTCTTTGTATGGGGTGAGCGACATTGGTCGTTTTTGAACAAACAT
GAAGATGGTTTTGTGCGATTTGAATGCGACGATTTTAGCGCTGATTTTAA
TGGTGAATGGATGGTCTATGTCCGTTAGATGGAGTTTCTTATATGGTTTC
TGACCAATATAACTTTGGTGTATTCCCAATGGTTTTCTGGCGAAGAGAAA
TTACAAGCCACAACAAACACTGATAAAGAGGATgtttcaaaaccttttca
gGCAACTTCGCCTAttcaatgcattttgaaatgtcaaagAAGGTCGAGGG
AAGGTTATTTTGTCGAAAATAAAGAGCAatgtttttgcttgaaaagtgAA
GATCAGAAAATATTATCGGATGAGAAAGTCAATGGAATATTTTACAAGCC
CGTCACTGTGGAAAAACCGATTGACTCGTGCAAAGCTGAAAGAAAAAGAT
GCCTTGATTGTCAATCTGATTTTTATGAACTTGATATCGgggaagatgaa
aagaaaaatgtctTCTGCAATTTCGAAAAAGATGAGGGGAATGGAGGTGT
TGGTGATGGGTCGTGCATGGCTATCAAGGAACATTGTATAGGCTGTTCAT
CGGgattatattattttgaaattctcGGTATAGCAACAGAAGTTTTTTGT
GAGATGACAGAGGATGGAGGCGGGTGGATGGCTATTGTGAACATCACCTT
CGACGACAATAGCCTGCTGGCCAACGCAATTGCAGTTCTTGAGAAACCAT
CATTACTCAACCAGCTCAATAACATTCAAAGCGGTCGCTTTTTATTAGCA
TCCGATGAATTGAAAAAGCTATTCACCAATGGAGGTTACACAGAGCTACG
AGTTAAATGCTTTAAACCATACCATGGTCGCACACTCCATGCAGCCATAA
CAGGAACTAAATCGTTGACATATCTAAGAGGAAAAGGAGTGGTTCGAGGT
GACGGTGGTCATTGTCAAGGTAGTCATTGTGGTCTATGTGGTGAAGTACG
ATTCCTGGCTGATGACACCTCAATCATGGGTCAACGAAACTGCTCACAAT
TAGGCATGGGAATGGAGATAACAACAAGCCTTTATGACCACGCTTTCTTT
GTATGGGGTGAGCGACATTGGTCGTTTTTGAACAAACATGAAGATGGTTT
TGTGCGATTTGAATGCGACGATTTTAGCGCTGATTTTAATGGTGAATGGA
TGGTCTATGTCCGTTAGATGGAGTTTCTTATATGGTTTCTGACCAATATA
ACTTTGGTGTATTCCCAATGGTTTTCTGGCGAAGAGAAATTACAAGCCAC
AACAAACACTGATAAAGAGGATgtttcaaaaccttttcagGCAACTTCGC
CTAttcaatgcattttgaaatgtcaaagAAGGTCGAGGGAAGGTTATTTT
GTCGAAAATAAAGAGCAatgtttttgcttgaaaagtgAAGATCAGAAAAT
ATTATCGGATGAGAAAGTCAATGGAATATTTTACAAGCCCGTCACTGTGG
AAAAACCGATTGACTCGTGCAAAGCTGAAAGAAAAAGATGCCTTGATTGT
CAATCTGATTTTTATGAACTTGATATCGgggaagatgaaaagaaaaatgt
ctTCTGCAATTTCGAAAAAGATGAGGGGAATGGAGGTGTTGGTGATGGGT
CGTGCATGGCTATCAAGGAACATTGTATAGGCTGTTCATCGGgattatat
tattttgaaattctcGGTATAGCAACAGAAGTTTTTTGTGAGATGACAGA
GGATGGAGGCGGGTGGATGGCTATTGTGAACATCACCTTCGACGACAATA
GCCTGCTGGCCAACGCAATTGCAGTTCTTGAGAAACCATCATTACTCAAC
CAGCTCAATAACATTCAAAGCGGTCGCTTTTTATTAGCATCCGATGAATT
GAAAAAGCTATTCACCAATGGAGGTTACACAGAGCTACGAGTTAAATGCT
TTAAACCATACCATGGTCGCACACTCCATGCAGCCATAACAGGAACTAAA
TCGTTGACATATCTAAGAGGAAAAGGAGTGGTTCGAGGTGACGGTGGTCA
TTGTCAAGGTAGTCATTGTGGTCTATGTGGTGAAGTACGATTCCTGGCTG
ATGACACCTCAATCATGGGTCAACGAAACTGCTCACAATTAGGCATGGGA
ATGGAGATAACAACAAGCCTTTATGACCACGCTTTCTTTGTATGGGGTGA
GCGACATTGGTCGTTTTTGAACAAACATGAAGATGGTTTTGTGCGATTTG
AATGCGACGATTTTAGCGCTGATTTTAATGGTGAATGGATGGTCTATGTC
CGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065553-exon-scaffold_440-1491911889:198298..198791 | TCONS_00065553-exon-scaffold_440-1491911889:198298..198791 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1510915933:198298..198791 | TCONS_00065553-exon-scaffold_440-1510915933:198298..198791 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1575043694:198298..198791 | TCONS_00065553-exon-scaffold_440-1575043694:198298..198791 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1491911889:200070..200331 | TCONS_00065553-exon-scaffold_440-1491911889:200070..200331 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1510915933:200070..200331 | TCONS_00065553-exon-scaffold_440-1510915933:200070..200331 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1575043694:200070..200331 | TCONS_00065553-exon-scaffold_440-1575043694:200070..200331 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1491911889:200631..200827 | TCONS_00065553-exon-scaffold_440-1491911889:200631..200827 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1510915933:200631..200827 | TCONS_00065553-exon-scaffold_440-1510915933:200631..200827 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1575043694:200631..200827 | TCONS_00065553-exon-scaffold_440-1575043694:200631..200827 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1491911889:201032..201723 | TCONS_00065553-exon-scaffold_440-1491911889:201032..201723 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1510915933:201032..201723 | TCONS_00065553-exon-scaffold_440-1510915933:201032..201723 | Clytia hemisphaerica | exon |
| TCONS_00065553-exon-scaffold_440-1575043694:201032..201723 | TCONS_00065553-exon-scaffold_440-1575043694:201032..201723 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:198298..201723 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014716 | Fibrinogen_a/b/g_C_1 |
| IPR002181 | Fibrinogen_a/b/g_C_dom |
Blast
The following BLAST results are available for this feature:
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