TCONS_00065525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065525
Unique NameTCONS_00065525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065525 ID=TCONS_00065525|Name=TCONS_00065525|organism=Clytia hemisphaerica|type=transcript|length=1778bp
atcaatcaGTACTTCatttgcaaccaatcagctgttgggttcgtggaaga
cattgtaatggtgcatatcatgcaTAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTtaccagtagcgtggtgg
gtcgaccaaaattcgggcaaactggggcgGAAACTGGCACTAGTGTCTTC
CAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCTGGA
CCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCAAAA
GTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGACACCAATTTCG
CTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATG
TATGGACATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTT
GAACCAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGG
AGTTGCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTT
GTTCATGCGAGCGCAATAAGGACGGAACAAttaccaaaacaacaacaaca
aaaacaacaacagcgCATCACCTTAGTAACGGTTTCCAATGGCATCAATG
TAATGATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATA
GTGTGGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAG
GTTATGATGAACCTACATAATAATAAAGTTGGAAGAATGctCTTGAAGGA
GAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCAGCA
CTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGTCTA
TTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACtttgaaatatataaa
tacACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGACCG
ACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAGACT
ACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAAGCC
CCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTAAAT
TACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGTAAA
GTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAAATA
AATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCCAAG
GAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAAAAG
CACGATTGAAAGACGAAGTCAATATTTcagcaaaaaagaaatttgaatat
tgaaaaGATGTTCATGGTTGttaaaattgaaacatgttTTTACTTTTACC
ttTACGAAAAGAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACG
CAATGTATAACGGGAGGACATCgtgtaaatatgattttttagagattttg
tagttttataatttatagactttattttttatgtacaaaaattgacGATT
TTAAAAATAAGCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATC
gatagatttttcaaaaaaagaaatggaT
Run BLAST on NCBI

protein sequence of unclassified Wnt ligand X1B

>TCONS_00065525-protein ID=TCONS_00065525-protein|Name=unclassified Wnt ligand X1B|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MLSNICIRDSVKTTGFGRPQTKDNSNLFIYEVLPVAWWVDQNSGKLGRKL
ALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDEC
RHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNA
IFSSGVAYSITKACSSNKLEGCSCERNKDGTITKTTTTKTTTAHHLSNGF
QWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGR
MLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVT
LKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNKTTGRRCKLNSKKK
AKKKPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKV
HSCK
Run BLAST on NCBI

transcript from alignment at scaffold_44:358273..362944-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065525 ID=TCONS_00065525|Name=TCONS_00065525|organism=Clytia hemisphaerica|type=transcript|length=4672bp|location=Sequence derived from alignment at scaffold_44:358273..362944- (Clytia hemisphaerica)
ATCAATCAGTACTTCATTTGCAACCAATCAGCTGTTGGGTTCGTGGAAGA
CATTGTAATGGTGCATATCATGCATAGCAATACACTTATCAAACTCGCAA
CGTCACTGAGGGAATTGTGTTCAAGTTTAGAGATGAATGCTATCAAATAT
CTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAA
AGGATAACTCGAACCTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTGG
GTCGACCAAAATTCGGGCAAACTGGGGCGGTAATTTGAGAAAATTTTGAT
TTTAGCGCCTCCTATGAAAACTAAATATCGTTTTGAAATAACGCGAGCGA
AGCGAATACGAAAATTTTAGGGTTTTTTTTATCTCTTTTTGGCCGAAAAC
TGCCATACCAAAAGTGTAAGAGAGCAAAGGGGCACCGAAATTAATAATCA
GAGGCGTCTTTTTGCGTCCTTTGTATTCCGGCGCCCCTTTGAAAAACCTC
CCCTGGGAGAGGGGTGGGCATTTTCCCCCATCACATTTTTATTAAGTACC
AGAGTGTATCTCACGCATAACGTAGCGCAGCGTAATGGATTTTGTAATTT
TCGTAAATGTCGGGTCTGTTTACAGACAACATTCTGTTAAAAAGTTAACG
CACAAAATTGAGTGTTGATTCTTTCTCTTTAGGAAACTGGCACTAGTGTC
TTCCAATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCT
GGACCAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCA
AAAGTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGGTAAGATGT
TGTTATTTATTGATAATGAAANGCGCTGAAATGGCTTATGATGAATGCAG
GTAAGATGTTGTTATTTATTGATAATGAAATGGTTTATATTTATCATATT
TAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATTGGTTT
AGCGTCTTCTAACCCCTCAAAGCCAACAAAGGCNATGGTTTATATTTATC
ATATTTAACGCAATAAAATCTCTACCCGAGATACTGTGTGCAATATTATT
GGTTTAGCGTCTTCTAACCCCTCAAAACCAACAAAGGACTAATTTTCAAA
CTTCTGCTACTGTAGCTTTACGAGTACAGACAATCTTTCCGTGAAGTAAG
AAATCTTATAACAATCGTATACTTTTTGAAGAAGTGGTTTTGTTCCAACA
TTAGCGAGGTTGATCTAGCACAAAACTGTTATTTATGGTGTCGGTTCCAT
TGGTTCAGTAATGCAACTCTCCCGCTGATTTTTCTTACGTATACCGGCCG
CCAAAACGGCTGTAAACTCCGCGCGTATAATATTTTCCCGCTTTTACTAT
CACTGTAACGGACGGTAACACTGTCTACGTTTTCTGAGGCCCGATTTACA
GGCTATTTAAAAGACCTGAAATTTAGACCTTTTGGGATTTTTTGAAGGCA
TGTCGACTTGAAACGTGTTTGATAAAGTTAGAGAAAGAAATTAGAAACTA
AGAAAGCGCGTTTGGGAATAAATATAACACGTAAACAAAGATTGAAATGG
GGAAAATCAGACCTCATAAGCTTGATATTAAAGATCAGTTTGTACACCAA
GCATAAACGTTTGATCCTACCTACATTTTCAGACACCAATTTCGCTGGCG
TCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATGTATGGA
CATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTTGAACCA
GGTAAGGTTTATCCTCTAACCAAATTTGAGGCAAAATCGACCTTATGGTA
TATTTTTTTGGAAATTCTTTGTCCTTCATAGAGCAGAAAGTGGCAGGATA
TTTGCCCCAAAGGTTTTGCAATACATTATTTTTTGGTCTTTACACACCTT
AAAGTACACTGTCCTTAACACAGTCCACTATTGGAAACCCTGAAAATGTG
TACTATTGACGACCAAGGGGCAGGCGGGTTTAAAAGGATATTGCAAAAAT
ATTTTAAAAACTGTCATACCTTGACCCGTTTTCTATCCTTCATTCTTGAA
CAGGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGGAGTT
GCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTTGTTC
ATGCGAGCGCAATAAGGACGGAACAATTACCAAAACAACAACAACAAAAA
CAACAACAGCGCATCACCTTAGTAACGGTTTCCAATGGCATCAATGTAAT
GATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATAGTGT
GGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAGGTTA
TGATGAACCTACATAATAATAAAGTTGGAAGAATGGTTAGTATAACACAC
GCGTTTTTTATGAGAACTAGTAAATTTAGGCTTGGCTGTTCTTATTTTTT
CGATTTTCAGACTGTTCTTAAAATGTTCTTAATATCCTTACTTTATTCAC
TTACTGACTTAAAAAGCGGCATTTTCATTTTTGAAATTCTGAAGCTTTAA
TCTGGTCTTCTTATGAAAAAGCGGATGTGGGTGTTATGGAATTTCATTTT
ATTTTAAAGATCCTGCTCCCCCCCTGGGGACGGAAATCTTATATAGGGTT
TTAAGATTTATTTCTAGGAAAGCTTCATTGTTCTTTAACTCAGGGAAAGA
ACCCCACACAACTATTAATAAGTATATGTTTTTCAATTTCAGCTCTTGAA
GGAGAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCA
GCACTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGT
CTATTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACTTTGAAATATAT
AAATACACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGA
CCGACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAATAAG
ACTACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAA
GCCCCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTA
AATTACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGT
AAAGTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAA
ATAAATAACAGACGCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCC
AAGGAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAA
AAGCACGATTGAAAGACGAAGTCAATATTTCAGCAAAAAAGAAATTTGAA
TATTGAAAAGATGTTCATGGTTGTTAAAATTGAAACATGTTTTTACTTTT
ACCATTTAGACCCTAATGCTGATGGCGTAGACAATCGGAGAAAGTGAGTA
GGAAATTTCGGATATGACAAATCAAAGATCATGTGTATTCTGTACGGTTG
AATAGATAATCTTTTAAATTTATCTGGAAAGCCAATAAATATTTGTAATA
GACAAAATATTTGGAAACTTTACGAAAAGAGACATGACATTAGTCCCCCT
TTAATCCTTTCAAAAACGCAATGTATAACGGGAGGACATCGTGTAAATAT
GATTTTTTAGAGATTTTGTAGTTTTATAATTTATAGACTTTATTTTTTAT
GTACAAAAATTGACGATTTTAAAAATAAGCAAATTTACGACAAAAATTGG
TAGTAACTATTTATCATCGATAGATTTTTCAAAAAAAGAAATGGATCTTG
TTAACATAAATTCAACAAGGAATTAACGTGGCTCTCTAGAAATTATTAGA
CCGAGTCTATTATCTGATTTTCCGATGGCGGATTGGCAGCCGCCCACGCT
AAAGCTCTAAAGCAGCCGGCAGGCTTCCCCTCGGATAGGAATGATAGTCG
ACCTTTGATGTGTCGCATCCCAGTCGGGTTTAACTACTCTTGTCTCCCGA
ATAGACGGGGGGGGTCCGAATAAGCAGGGAGGTAGGGAAATTTTCTAAAT
TCTAATAAGCGAGGGGGATTGAATAAGAGNAGGTTCAGCTCGCTTTTTTT
GATTTGTAGCCTTCATTTGATTTCAAAAGCACGATTGAAAGACGAAGTCA
ATATTTCAGCAAAAAAGAAATTTGAATATTGAAAAGATGTTCATGGTTGT
TAAAATTGAAATATGTTTTTACTTTTACCATTTAGACCCTAATGCTGATG
GCGTAGACAATCGGAGAAAGTGAGTAGGAAATTTCGGATATGACAAATCA
AAGATAATGTGTATTCTGTACGGTTGAATAGATAATCTTTTAAATTCATC
TGGAAAGCCAATAAATATTTGTAATAGACAAAATATTTGGAAACTTTACG
AAAAGAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACGCAATGT
ATAACGGGAGGACATCGTGTAAATATGATTTTTTAGAGATTTTGTAGTTT
TATAATTTATAGACTTTATTTTTTATGTACAAAAATTGACGATTTTAAAA
ATAAGCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATCGATAGA
TTTTTCAAAAAAAGAAATGGAT

Coding sequence (CDS) from alignment at scaffold_44:358273..362944-

>TCONS_00065525 ID=TCONS_00065525|Name=TCONS_00065525|organism=Clytia hemisphaerica|type=CDS|length=6075bp|location=Sequence derived from alignment at scaffold_44:358273..362944- (Clytia hemisphaerica)
CTCTTGAAGGAGAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGG
CACGTGCAGCACTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACA
TCGGTGGTCTATTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACTTTG
AAATATATAAATACACATCGCATATTGATGCCAGCTGATAATCAACTGGC
TCCAGTGACCGACACTGATCTTATTTATTTGAAATCATCACCATCATATT
GTAATAAGACTACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCG
AAAAAGAAGCCCCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTA
TAGGACTAAATTACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTT
GGTGTTGTAAAGTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCAT
AGTTGTAAATAAGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCA
TCTGGAGTTGCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGA
AGGTTGTTCATGCGAGCGCAATAAGGACGGAACAATTACCAAAACAACAA
CAACAAAAACAACAACAGCGCATCACCTTAGTAACGGTTTCCAATGGCAT
CAATGTAATGATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTAT
TGATAGTGTGGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATG
CGCAGGTTATGATGAACCTACATAATAATAAAGTTGGAAGAATGACACCA
ATTTCGCTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGA
ACAATGTATGGACATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAG
GATTTTGAACCAGGAAACTGGCACTAGTGTCTTCCAATCTTTTCAACCAG
CAACAACAAATTTGTAACCATTACCAATTCTGGACCAAAAGCCAACGAAC
TCTTTGTATGAAATTTACAGAGCTTATCCCAAAAGTCGCGGAAGGCGCTG
AAATGGCTTATGATGAATGCAGATGCTATCAAATATCTGTATCCGTGACA
GCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAAAGGATAACTCGAAC
CTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTGGGTCGACCAAAATTC
GGGCAAACTGGGGCGCTCTTGAAGGAGAATTTACAGCAAAATTGTGTCTG
TCATGGAGTTTCTGGCACGTGCAGCACTCAAGTTTGTTCCAAACGTCTCG
GACCTTATAGAGACATCGGTGGTCTATTACGAAAGAGGACTGAAAAAGCA
ATCAAAGTGACTTTGAAATATATAAATACACATCGCATATTGATGCCAGC
TGATAATCAACTGGCTCCAGTGACCGACACTGATCTTATTTATTTGAAAT
CATCACCATCATATTGTAATAAGACTACTGGAAGGCGGTGTAAATTGAAC
AGTAAAAAGAAGGCGAAAAAGAAGCCCCGTGGAGGTTGTGATATGATGTG
TTGTGGTGCAGGCTATAGGACTAAATTACGAACTGTGACGAAGAACTGTA
AATGTCAATTCATTTGGTGTTGTAAAGTCACATGCGAGAAATGTTATCAT
CAACAGAAAGTTCATAGTTGTAAATAAGTGGAATCGAGGCTTCATTTGTC
AACGCGATTTTCTCATCTGGAGTTGCTTACTCAATCACAAAAGCATGTTC
CTCAAACAAATTGGAAGGTTGTTCATGCGAGCGCAATAAGGACGGAACAA
TTACCAAAACAACAACAACAAAAACAACAACAGCGCATCACCTTAGTAAC
GGTTTCCAATGGCATCAATGTAATGATAATGTAATGTTTGGCTTGTCATT
TGCAAAGAAGTTTATTGATAGTGTGGAGTTAAATTGGAACCCAGATCGCA
TGTTCACGACGCATGCGCAGGTTATGATGAACCTACATAATAATAAAGTT
GGAAGAATGACACCAATTTCGCTGGCGTCGTTGGAACTGTGCAGCTAAGA
AGCCAGTATTGACGAACAATGTATGGACATACGAAACGAACGAATACCCT
TCCCTGTTCGGAGAGGATTTTGAACCAGGAAACTGGCACTAGTGTCTTCC
AATCTTTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCTGGAC
CAAAAGCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCAAAAG
TCGCGGAAGGCGCTGAAATGGCTTATGATGAATGCAGATGCTATCAAATA
TCTGTATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACA
AAGGATAACTCGAACCTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTG
GGTCGACCAAAATTCGGGCAAACTGGGGCGCTCTTGAAGGAGAATTTACA
GCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCAGCACTCAAGTTT
GTTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGTCTATTACGAAAG
AGGACTGAAAAAGCAATCAAAGTGACTTTGAAATATATAAATACACATCG
CATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGACCGACACTGATC
TTATTTATTTGAAATCATCACCATCATATTGTAATAAGACTACTGGAAGG
CGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAAGCCCCGTGGAGG
TTGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTAAATTACGAACTG
TGACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGTAAAGTCACATGC
GAGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAAATAAGTGGAATC
GAGGCTTCATTTGTCAACGCGATTTTCTCATCTGGAGTTGCTTACTCAAT
CACAAAAGCATGTTCCTCAAACAAATTGGAAGGTTGTTCATGCGAGCGCA
ATAAGGACGGAACAATTACCAAAACAACAACAACAAAAACAACAACAGCG
CATCACCTTAGTAACGGTTTCCAATGGCATCAATGTAATGATAATGTAAT
GTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATAGTGTGGAGTTAAATT
GGAACCCAGATCGCATGTTCACGACGCATGCGCAGGTTATGATGAACCTA
CATAATAATAAAGTTGGAAGAATGACACCAATTTCGCTGGCGTCGTTGGA
ACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATGTATGGACATACGAA
ACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTTGAACCAGGAAACTG
GCACTAGTGTCTTCCAATCTTTTCAACCAGCAACAACAAATTTGTAACCA
TTACCAATTCTGGACCAAAAGCCAACGAACTCTTTGTATGAAATTTACAG
AGCTTATCCCAAAAGTCGCGGAAGGCGCTGAAATGGCTTATGATGAATGC
AGATGCTATCAAATATCTGTATCCGTGACAGCGTCAAAACAACGGGTTTT
GGACGTCCTCAAACAAAGGATAACTCGAACCTTTTTATTTATGAAGTCTT
ACCAGTAGCGTGGTGGGTCGACCAAAATTCGGGCAAACTGGGGCGCTCTT
GAAGGAGAATTTACAGCAAAATTGTGTCTGTCATGGAGTTTCTGGCACGT
GCAGCACTCAAGTTTGTTCCAAACGTCTCGGACCTTATAGAGACATCGGT
GGTCTATTACGAAAGAGGACTGAAAAAGCAATCAAAGTGACTTTGAAATA
TATAAATACACATCGCATATTGATGCCAGCTGATAATCAACTGGCTCCAG
TGACCGACACTGATCTTATTTATTTGAAATCATCACCATCATATTGTAAT
AAGACTACTGGAAGGCGGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAA
GAAGCCCCGTGGAGGTTGTGATATGATGTGTTGTGGTGCAGGCTATAGGA
CTAAATTACGAACTGTGACGAAGAACTGTAAATGTCAATTCATTTGGTGT
TGTAAAGTCACATGCGAGAAATGTTATCATCAACAGAAAGTTCATAGTTG
TAAATAAGTGGAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGG
AGTTGCTTACTCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTT
GTTCATGCGAGCGCAATAAGGACGGAACAATTACCAAAACAACAACAACA
AAAACAACAACAGCGCATCACCTTAGTAACGGTTTCCAATGGCATCAATG
TAATGATAATGTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATA
GTGTGGAGTTAAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAG
GTTATGATGAACCTACATAATAATAAAGTTGGAAGAATGACACCAATTTC
GCTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAAT
GTATGGACATACGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTT
TGAACCAGGAAACTGGCACTAGTGTCTTCCAATCTTTTCAACCAGCAACA
ACAAATTTGTAACCATTACCAATTCTGGACCAAAAGCCAACGAACTCTTT
GTATGAAATTTACAGAGCTTATCCCAAAAGTCGCGGAAGGCGCTGAAATG
GCTTATGATGAATGCAGATGCTATCAAATATCTGTATCCGTGACAGCGTC
AAAACAACGGGTTTTGGACGTCCTCAAACAAAGGATAACTCGAACCTTTT
TATTTATGAAGTCTTACCAGTAGCGTGGTGGGTCGACCAAAATTCGGGCA
AACTGGGGCGCTCTTGAAGGAGAATTTACAGCAAAATTGTGTCTGTCATG
GAGTTTCTGGCACGTGCAGCACTCAAGTTTGTTCCAAACGTCTCGGACCT
TATAGAGACATCGGTGGTCTATTACGAAAGAGGACTGAAAAAGCAATCAA
AGTGACTTTGAAATATATAAATACACATCGCATATTGATGCCAGCTGATA
ATCAACTGGCTCCAGTGACCGACACTGATCTTATTTATTTGAAATCATCA
CCATCATATTGTAATAAGACTACTGGAAGGCGGTGTAAATTGAACAGTAA
AAAGAAGGCGAAAAAGAAGCCCCGTGGAGGTTGTGATATGATGTGTTGTG
GTGCAGGCTATAGGACTAAATTACGAACTGTGACGAAGAACTGTAAATGT
CAATTCATTTGGTGTTGTAAAGTCACATGCGAGAAATGTTATCATCAACA
GAAAGTTCATAGTTGTAAATAAGTGGAATCGAGGCTTCATTTGTCAACGC
GATTTTCTCATCTGGAGTTGCTTACTCAATCACAAAAGCATGTTCCTCAA
ACAAATTGGAAGGTTGTTCATGCGAGCGCAATAAGGACGGAACAATTACC
AAAACAACAACAACAAAAACAACAACAGCGCATCACCTTAGTAACGGTTT
CCAATGGCATCAATGTAATGATAATGTAATGTTTGGCTTGTCATTTGCAA
AGAAGTTTATTGATAGTGTGGAGTTAAATTGGAACCCAGATCGCATGTTC
ACGACGCATGCGCAGGTTATGATGAACCTACATAATAATAAAGTTGGAAG
AATGACACCAATTTCGCTGGCGTCGTTGGAACTGTGCAGCTAAGAAGCCA
GTATTGACGAACAATGTATGGACATACGAAACGAACGAATACCCTTCCCT
GTTCGGAGAGGATTTTGAACCAGGAAACTGGCACTAGTGTCTTCCAATCT
TTTCAACCAGCAACAACAAATTTGTAACCATTACCAATTCTGGACCAAAA
GCCAACGAACTCTTTGTATGAAATTTACAGAGCTTATCCCAAAAGTCGCG
GAAGGCGCTGAAATGGCTTATGATGAATGCAGATGCTATCAAATATCTGT
ATCCGTGACAGCGTCAAAACAACGGGTTTTGGACGTCCTCAAACAAAGGA
TAACTCGAACCTTTTTATTTATGAAGTCTTACCAGTAGCGTGGTGGGTCG
ACCAAAATTCGGGCAAACTGGGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041060XLOC_041060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065525-exon-scaffold_44-1575043694:362666..362944TCONS_00065525-exon-scaffold_44-1575043694:362666..362944Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1575043694:362104..362262TCONS_00065525-exon-scaffold_44-1575043694:362104..362262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1575043694:361144..361262TCONS_00065525-exon-scaffold_44-1575043694:361144..361262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1575043694:360510..360841TCONS_00065525-exon-scaffold_44-1575043694:360510..360841Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1575043694:359492..360152TCONS_00065525-exon-scaffold_44-1575043694:359492..360152Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1575043694:358273..358500TCONS_00065525-exon-scaffold_44-1575043694:358273..358500Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:362666..362944TCONS_00065525-exon-scaffold_44-1510915933:362666..362944Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:362104..362262TCONS_00065525-exon-scaffold_44-1510915933:362104..362262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:361144..361262TCONS_00065525-exon-scaffold_44-1510915933:361144..361262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:360510..360841TCONS_00065525-exon-scaffold_44-1510915933:360510..360841Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:359492..360152TCONS_00065525-exon-scaffold_44-1510915933:359492..360152Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1510915933:358273..358500TCONS_00065525-exon-scaffold_44-1510915933:358273..358500Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:362666..362944TCONS_00065525-exon-scaffold_44-1491911889:362666..362944Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:362104..362262TCONS_00065525-exon-scaffold_44-1491911889:362104..362262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:361144..361262TCONS_00065525-exon-scaffold_44-1491911889:361144..361262Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:360510..360841TCONS_00065525-exon-scaffold_44-1491911889:360510..360841Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:359492..360152TCONS_00065525-exon-scaffold_44-1491911889:359492..360152Clytia hemisphaericaexon
TCONS_00065525-exon-scaffold_44-1491911889:358273..358500TCONS_00065525-exon-scaffold_44-1491911889:358273..358500Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
unclassified Wnt ligand X1BTCONS_00065525-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:358273..362944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000106751	6.84561e-05	4.62634e-05	0.000176779	0.000760977	0.000241166	0.0130852	0.00809701	1.54532	1.19318	0.00613371	0.00285503	0.00176105	0.000528637	0.000579375	0.927066	0.00135716	0.00118475	0.00188691	0.00123268	0.00193102	0.00283785	0.00224591	0.000952818	0.00561498	0.0041929	0.000428802	0.00120226	0.000968065	0.00407721
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005817Wnt
Vocabulary: Molecular Function
TermDefinition
GO:0005102receptor binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0016055Wnt signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016055 Wnt signaling pathway
cellular_component GO:0005576 extracellular region
molecular_function GO:0005102 receptor binding
Blast
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BLAST of TCONS_00065525 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4)

HSP 1 Score: 228.024 bits (580), Expect = 3.323e-68
Identity = 120/363 (33.06%), Postives = 197/363 (54.27%), Query Frame = 2 
Query:  284 LALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDECRHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNAIFSSGVAYSITKACSSNKLEGCSCERNKDGXXXXXXXXXXXXAHHLSNGFQWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGRMLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVTLKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNK--------TTGRRCKLNSXXXXXXXPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKVHSCK 1348
            LA +SS     +++ C   +   + Q  +C +  E++  V  GA++A +EC++QFR RRWNC+              T +   +FG+    G  EA+FV AI S+GVA+++T+ACSS +LE C C+R   G                  GFQW  C+DN+ +G++F++ F+D  E +        + ++ +MNLHNN+ GR  +  +++  C CHGVSG+C  + C + + P+R +G  L+++ + A +V  + + + R L+P + Q  P TD DL+YL+ SP +C +        T GR C   SK         GC+++CCG G+ T    + + C C+F WCC V C +C    ++H+C+
Sbjct:   28 LAKLSSVGSISEEETCEKLKGLIQRQVQMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCS--------------TLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDRTVHGVS--------------PQGFQWSGCSDNIAYGVAFSQSFVDVRERSKG-----ASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAID------GCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR 351
The following BLAST results are available for this feature:
BLAST of TCONS_00065525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT43.323e-6833.06Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4[more]
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