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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065509 ID=TCONS_00065509|Name=TCONS_00065509|organism=Clytia hemisphaerica|type=transcript|length=1707bp
AAAAGTTGGGAGAAATTTGATATTTGACACTTAAGATATTCTGTCTAGCG
AGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGGTTTGCA
CTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCAGACAATTTGTCA
AGGCAGCAACCACCTACAACAGAAATTTGCATATGAACCTACActttcat
ttccatcaaaaaatTATCCACATCTTGCCATCAGCTATGACACAACATCA
AAAGTATCCAAAATACTGGCGCCATCATCAAACTCGGCTTGGAAGATAGT
ACCAGGGCTTTGTGGCCAAGGGTTCAGTTTTGAATCAACAACACAACCTA
ATCATTTCTTAAGACATCGAAACTTTCTCTTGTTCGTGGATCCTTTTGAA
AATACCGCCCTCTACAAAAACGACGCTTGCTTCAAACCTGTTGCTGGTCT
TGCCGATTGCAATGAAGTCTCGTTTCAATCGATCAACTATCCAGACCGTT
TCTTGCGACATCAAGGCTATCGAATGAAACTCCATCCAAATGACGGCTCG
TCTCTGTTCAAGAATGATGCAACATTTAATATTCAGACAATTTGTCAAGG
CAGCAACATTCTACAACAGAAATTTGCATATGAACCTACActttcatttc
catcaaaaaatTATCCACATCTTGCCATCAGCTATGACACAACATCAAAA
GTATCCAAAATACTGGCGCCATCATCAAACTCGGCTTGGAAGATAGTACC
AGGGCTTTGTGGCCAAGGGTTCAGCTTTGAATCAACAACACAACCTAACC
ATTTCTTGAGACATCGACACCTTCTCTTGTTCGTGGATCCCTTTGAAAAT
ACCGCCCTTTACAAGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGC
CGATTGCAATGAAGTCTCGTTTCAATCCATCAACTATCCAGACCGTTTCT
TGCGACATCAAGGCTATCGAATGAAACTCCATCAAAATGACGGCTCGTCT
CTGTTCAAGAATGATGCAACGTTtaatatttgaatttcaaattctttggG
ATAAAGACTCTTCTgtaactttttggacctaccccggtggaggtcctata
aattaaccgttgtatgttcgtccgttcgttagttaccagcttttctcgag
attggctcattagttttttctgattttttgcacaaagatgcataactata
aaccctcgaatgtgacggagcctgattttcgagaaaaaaattttttaggc
aaatttgggccaaaaaattgctaaaaaacggtttttttggactttgtgaa
aaattggattattaattttttctcattttttctatgaaagtagggtacca
tcataggtaaaagatgggttaagcagatttttgctaaaaaaattttttgg
ctcaaaaaatgcatgtttatctataagaatcactattaataagcatacat
gttcttagtcaaattactcaattatttttatgagatagatgtattttttg
ctcatgagggcttacttttgaagaatatgtgtgtttagacatgaaattta
gGCTGCTTggtgtgtttttatagaaaaactggcctaattcgatatttttt
tataagcaggttatcaattacttaggtattagcttttctcgaggttggcg
ctttcattctttatgattttttgcacaaagatgcatagctataaaccctc
gaatgtt Run BLAST on NCBI transcript from alignment at scaffold_44:201701..205094- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065509 ID=TCONS_00065509|Name=TCONS_00065509|organism=Clytia hemisphaerica|type=transcript|length=3394bp|location=Sequence derived from alignment at scaffold_44:201701..205094- (Clytia hemisphaerica)
AAAAGTTGGGAGAAATTTGATATTTGACACTTAAGATATTCTGTCTAGCG
AGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGGTTTGCA
CTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCGTAAGTCAGATTT
TATTCAGTTTCAAAAATTCATCACCCCTTTGCATTAACACGTAATCGCCA
ATAAACTTTTTAGCTTATTTTGAGTTGTCTTGTCACATCCCTTACTGTGC
AGTGGCCACAAACATATCATGCCATTTATTGAGGTATAAATATTATGCTT
TTTTCATACAATAATTCAGAATTCGTTTAAACCATGATTCAAATCATATT
TTAGAGACAATTTGTCAAGGCAGCAACCACCTACAACAGAAATTTGCATA
TGAACCTACACTTTCATTTCCATCAAAAAATTATCCACATCTTGCCATCA
GCTATGACACAACATCAAAAGTATCCAAAATACTGGCGCCATCATCAAAC
TCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGGGTTCAGTTTTGA
ATCAACAACACAACCTAATCATTTCTTAAGACATCGAAACTTTCTCTTGT
TCGTGGATCCTTTTGAAAATACCGCCCTCTACAAAAACGACGCTTGCTTC
AAACCTGTTGCTGGTCTTGCCGATTGCAATGAAGTCTCGTTTCAATCGAT
CAACTATCCAGACCGTTTCTTGCGACATCAAGGCTATCGAATGAAACTCC
ATCCAAATGACGGCTCGTCTCTGTTCAAGAATGATGCAACATTTAATATT
CGTAAGATTTAAAATATTATTGCAATTTCATCACTGTGTTTCTTATTAGA
GCCCAAATCAGTCGGAAAAACATAATTCCAGGAATGAGTTAATAAGTTCT
TTTTTTGCAATATCAATGCATTATCATTTAAAATTTGCTCATATAATAAT
TCAAATCTTATTTCAGAGACAATTTGTCAAGGCAGCAACATTCTACAACA
GAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCAC
ATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGCG
CCATCATCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGG
GTTCAGCTTTGAATCAACAACACAACCTAACCATTTCTTGAGACATAGAA
ACTTTCTCTTGTTCGTGGATCCCTTTGAAAATATCGCCCTCTACAAGAAT
GACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAAGTCTC
GTTTCAATCGATCAACTATCCAGACCGTTTCTTACGACATCAAGGCTATC
AAATGAAACTCCATCAAAATGACGGCTCTTCTTTGTTCAAGAATGATGCA
ACATTTAATATTCGTAAGATTTGAAATATTATTGCAGTTTCATCTTCATT
ATACACTTGCGGGCTGCTGAACTTACCAATGGTTCGGAATCGAGGGACTA
ATTCGCTAATACAGTGGACCTTTTTAATTCGAACTTCTTCTCAGGTCCCG
TCGCAAGGACAAACCTTCGTAAAATACTCTACCTATTATTGGAATCTCTC
CGCAATTCGAACAGATTGGACTTTCTTCTCAAACTCGAGTTATTGAGAGT
CCCTCAAGAGTTAACAATATTAACATAGTTATCCTGTATACCTCGACTGA
ATGAACATATATTTATCAACCAGGGTTCGGTAGTTTCGTAACCCCTGCCC
ATGTAAAGCAATTCAATCAGAAAACTAAAAGTTTGAAGCCCTTAGGGCCC
TTGGCATTTACACGCGAGCAGGTTTTACCACCAATCAAGTTAGCTTATAT
TTGTCAGGGCTAGCACGTTTATAGCCGAGCTCTTTTCAACAATTGAAAAT
TTGATCCCGTTGAATCTCATCGAATATTTGACTAAGTGGGCGGCATTTTC
AATTTTGCTTCAAATGCTCTAAAATTTTATACCAATGACGCAAGATTTTA
TGTAGTCTCCAAAATAAATACAATAAAAAAGTTTCTGTATCAAAGGTCAT
GGCCCTTAGAAGCCGGTATTTCAACCCCTCCACAAGTTTACTCGTATAGT
CGGCAGAGAACATGTTAGCGAGGCCTCGTGAAAAATATTTATGACCTGCT
TTCCATCATTAGACATGACTTGGAGTCGATTTGAACAGTTTGGGGGTTTT
TGAAATGTTTTTGGAGCCCTTTTAAAAGACAGGTTATGTGTATTGTAATT
CATATTCAAATCATATTTTAGAGACAATTTGTCAAGGCAGCGACCACCTA
CAACAGAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATTA
TCCAAATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATAC
TGGCACCATCATCAAACTCGGCTTGGAAGATAGTGCCAGGGCTTTGCGGC
CAAGGGTTCAGCTTTGAATCAACAACTCAACCTAACCATTTCTTGAGACA
TCGACACCTTCTCTTGTTCGTGGATCCCTTTGAAAATACCGCCCTTTACA
AGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGAA
GTCTCGTTTCAATCCATCAACTATCCAGACCGTTTCTTGCGACATCAAGG
CTATCGAATGAAACTCCATCAAAATGACGGCTCGTCTCTGTTCAAGAATG
ATGCAACGTTTAATATTTGAATTTCAAATTCTTTGGGATAAAGACTCTTC
TGTAACTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCGTTGT
ATGTTCGTCCGTTCGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTAG
TTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTCGAATGT
GACGGAGCCTGATTTTCGAGAAAAAAATTTTTTAGGCAAATTTGGGCCAA
AAAATTGCTAAAAAACGGTTTTTTTGGACTTTGTGAAAAATTGGATTATT
AATTTTTTCTCATTTTTTCTATGAAAGTAGGGTACCATCATAGGTAAAAG
ATGGGTTAAGCAGATTTTTGCTAAAAAAATTTTTTGGCTCAAAAAATGCA
TGTTTATCTATAAGAATCACTATTAATAAGCATACATGTTCTTAGTCAAA
TTACTCAATTATTTTTATGAGATAGATGTATTTTTTGCTCATGAGGGCTT
ACTTTTGAAGAATATGTGTGTTTAGACATGAAATTTAGGCTGCTTGGTGT
GTTTTTATAGAAAAACTGGCCTAATTCGATATTTTTTTATAAGCAGGTTA
TCAATTACTTAGGTATTAGCTTTTCTCGAGGTTGGCGCTTTCATTCTTTA
TGATTTTTTGCACAAAGATGCATAGCTATAAACCCTCGAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065509-exon-scaffold_44-1575043694:204958..205094 | TCONS_00065509-exon-scaffold_44-1575043694:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1575043694:204294..204740 | TCONS_00065509-exon-scaffold_44-1575043694:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1575043694:203901..204128 | TCONS_00065509-exon-scaffold_44-1575043694:203901..204128 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1575043694:201701..202595 | TCONS_00065509-exon-scaffold_44-1575043694:201701..202595 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1510915933:204958..205094 | TCONS_00065509-exon-scaffold_44-1510915933:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1510915933:204294..204740 | TCONS_00065509-exon-scaffold_44-1510915933:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1510915933:203901..204128 | TCONS_00065509-exon-scaffold_44-1510915933:203901..204128 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1510915933:201701..202595 | TCONS_00065509-exon-scaffold_44-1510915933:201701..202595 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1491911889:204958..205094 | TCONS_00065509-exon-scaffold_44-1491911889:204958..205094 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1491911889:204294..204740 | TCONS_00065509-exon-scaffold_44-1491911889:204294..204740 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1491911889:203901..204128 | TCONS_00065509-exon-scaffold_44-1491911889:203901..204128 | Clytia hemisphaerica | exon |
| TCONS_00065509-exon-scaffold_44-1491911889:201701..202595 | TCONS_00065509-exon-scaffold_44-1491911889:201701..202595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:201701..205094 - |
Blast
The following BLAST results are available for this feature:
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