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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065449 ID=TCONS_00065449|Name=TCONS_00065449|organism=Clytia hemisphaerica|type=transcript|length=2716bpRun BLAST on NCBI protein sequence of TCONS_00065449-protein >TCONS_00065449-protein ID=TCONS_00065449-protein|Name=TCONS_00065449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=747bp LAYAIATETSSSPITATATTTAPSFTVPPAPFPPYDSKNKTKLHIGALVPRun BLAST on NCBI transcript from alignment at scaffold_439:566497..573809- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065449 ID=TCONS_00065449|Name=TCONS_00065449|organism=Clytia hemisphaerica|type=transcript|length=7313bp|location=Sequence derived from alignment at scaffold_439:566497..573809- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_439:566497..573809- >TCONS_00065449 ID=TCONS_00065449|Name=TCONS_00065449|organism=Clytia hemisphaerica|type=CDS|length=31416bp|location=Sequence derived from alignment at scaffold_439:566497..573809- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065449 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 1.876e-55 Identity = 177/648 (27.31%), Postives = 297/648 (45.83%), Query Frame = 3
Query: 186 AAMHTAVRLINNDTNMLKNYELVLDYRDSTTLIGFSYLMFYDLVEKGPIKQMLIGPAFARATRAVAELTTRFKLPQVTYATLQKFGAREVPDPEIQQIGVPRVERHFPFLVKATPSLSSFNEAIVKIFQNFKWKRVAILYEYSAQQFFSTAYDLSLRLKSAGIEAAVIQGFSGTILTVDAQLDAILEKDVRIIFGIFSSKGARRIFCQAYKRGIYGLKYQWLTVSTLKSTWWKPV-TYNEPQNCTVKQYLTASDGYMSIANTNVRRDGVRSIGGQTAEEIWDLMKRQKAHDYFRYMKEAGLSNEPPPIDNEIKEESAFAFDAVYLAAITLDKIIKTKGKGALMT-----EYFNESQALYMTDVMLNSSFEGLTGRLHYGGKSGEERQGIVRIQQFRSNYTQVTHNISISRAELHDIGHFDIESKVIDIYDKTGMTLFKGGRVIKDRKTINRIPETYSLTTIGILWGLAAAGLVLCICVLFINVKYRNIRMIKMXXXXXXXXXXXXXXXCYASVVVYGLDSRFLTPRGIGIACNAVTIALSIGFTLSFGCLFTKTWRIYKIFTAAKTMEKVSIKDTHLYFIITLLVSIDIFVFLLWVFLSPF--NVEESELEQIVYQNADVIDSFFYHKCTCEYQLHFTV---TMYCYK 2096
A+ A+ I N++ +L+ Y L L D+ FYD ++ GP M+ G T +AE + L Q+++A A + + +P+ + PS ++ N AI+K+ ++++WKRV L + Q+F DL+ L IE + + FS T +L DVRII G F A ++FC AY+ +YG KYQW+ + +WW+ V T C K L A +GY+ + + +++I G+T + Q +Y G S + +A+D +++ A TL + ++T + Y + + + + M ++F G+TG++ + ++GE R G ++ QF+ SR +G ++ + ++I + T F+G KD+ I SL IL L G+++ LF N+K RN ++IKMSSP +NN II G ++ YAS+ ++GLD F++ + C T L++G+T +FG +F KTWR++ IF K M+K IKD L I+ ++ ID+ + + W + P VE+ +E I H CE H T+ +Y YK
Sbjct: 79 PAVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADK---------------KKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQ-DVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG---NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQ--------QYEREYNNKRSGVGPS-----------KFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF--RNGE-RMGTIKFTQFQD-----------SREV--KVGEYNAVADTLEIINDT--IRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVK-MKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEH---CE-NTHMTIWLGIVYAYK 664 HSP 2 Score: 94.3597 bits (233), Expect = 1.242e-19 Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 2075 GHDVLL*RLLTHLRIVXQLHFTVTM---YCYKGFLLIFGLFLAWETRNVKVAVLNDSKYIGMAVYNVCVVSAVGVICASALYNTQHYTTGYLVVTISIFLCTTGTLLLIFVPKIYLL 2416
G D+ + LL H H T+ + Y YKG L++FG FLAWETRNV + LNDSKYIGM+VYNV ++ +G A + + +V + I C+T TL L+FVPK+ L
Sbjct: 636 GRDISIRPLLEHCE---NTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGA--AVSFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKLITL 747 The following BLAST results are available for this feature:
BLAST of TCONS_00065449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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