TCONS_00065449-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065449-protein
Unique NameTCONS_00065449-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065449-protein ID=TCONS_00065449-protein|Name=TCONS_00065449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=747bp
LAYAIATETSSSPITATATTTAPSFTVPPAPFPPYDSKNKTKLHIGALVP
FLLTRDKLMFHAAMHTAVRLINNDTNMLKNYELVLDYRDSTTLIGFSYLM
FYDLVEKGPIKQMLIGPAFARATRAVAELTTRFKLPQVTYATLQKFGARE
VPDPEIQQIGVPRVERHFPFLVKATPSLSSFNEAIVKIFQNFKWKRVAIL
YEYSAQQFFSTAYDLSLRLKSAGIEAAVIQGFSGTILTVDAQLDAILEKD
VRIIFGIFSSKGARRIFCQAYKRGIYGLKYQWLTVSTLKSTWWKPVTYNE
PQNCTVKQYLTASDGYMSIANTNVRRDGVRSIGGQTAEEIWDLMKRQKAH
DYFRYMKEAGLSNEPPPIDNEIKEESAFAFDAVYLAAITLDKIIKTKGKG
ALMTEYFNESQALYMTDVMLNSSFEGLTGRLHYGGKSGEERQGIVRIQQF
RSNYTQVTHNISISRAELHDIGHFDIESKVIDIYDKTGMTLFKGGRVIKD
RKTINRIPETYSLTTIGILWGLAAAGLVLCICVLFINVKYRNIRMIKMSS
PNINNGIIAGSIICYASVVVYGLDSRFLTPRGIGIACNAVTIALSIGFTL
SFGCLFTKTWRIYKIFTAAKTMEKVSIKDTHLYFIITLLVSIDIFVFLLW
VFLSPFNVEESELEQIVYQNADVIDSFFYHKCTCEYQLHFTVTMYCYKGF
LLIFGLXINFISRSQCIAIKASYSYSDCSWHGKQGMSKSLFSMIQNI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041012XLOC_041012Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065449TCONS_00065449Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR001828ANF_lig-bd_rcpt
IPR017978GPCR_3_C
IPR028082Peripla_BP_I
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000337GPCR, family 3PRINTSPR00248GPCRMGRcoord: 181..197
score: 29.96
coord: 632..655
score: 19.53
coord: 595..616
score: 39.77
coord: 72..91
score: 30.31
NoneNo IPR availablePRINTSPR01176GABABRECEPTRcoord: 606..623
score: 35.35
coord: 636..661
score: 21.68
coord: 169..188
score: 30.91
coord: 587..606
score: 40.0
NoneNo IPR availableGENE3D3.40.50.2300coord: 39..230
e-value: 3.2E-16
score: 58.9
NoneNo IPR availableGENE3D3.40.50.2300coord: 231..437
e-value: 8.7E-8
score: 31.6
IPR001828Receptor, ligand binding regionPFAMPF01094ANF_receptorcoord: 62..433
e-value: 5.1E-34
score: 117.8
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 527..714
e-value: 1.5E-29
score: 103.4
IPR017978GPCR family 3, C-terminalPROSITEPS50259G_PROTEIN_RECEP_F3_4coord: 522..714
score: 15.746
IPR028082Periplasmic binding protein-like ISUPERFAMILY53822Periplasmic binding protein-like Icoord: 42..455

Blast
[Close]
BLAST of TCONS_00065449-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.166e-68
Identity = 183/666 (27.48%), Postives = 309/666 (46.40%), Query Frame = 0 
Query:   63 AMHTAVRLINNDTNMLKNYELVLDYRDSTTLIGFSYLMFYDLVEKGPIKQMLIGPAFARATRAVAELTTRFKLPQVTYATLQKFGAREVPDPEIQQIGVPRVERHFPFLVKATPSLSSFNEAIVKIFQNFKWKRVAILYEYSAQQFFSTAYDLSLRLKSAGIEAAVIQGFSGTILTVDAQLDAILEKDVRIIFGIFSSKGARRIFCQAYKRGIYGLKYQWLTVSTLKSTWWKPV-TYNEPQNCTVKQYLTASDGYMSIANTNVRRDGVRSIGGQTAEEIWDLMKRQKAHDYFRYMKEAGLSNEPPPIDNEIKEESAFAFDAVYLAAITLDKIIKTKGKGALMTE-----YFNESQALYMTDVMLNSSFEGLTGRLHYGGKSGEERQGIVRIQQFRSNYTQVTHNISISRAELHDIGHFDIESKVIDIYDKTGMTLFKGGRVIKDRKTINRIPETYSLTTIGILWGLAAAGLVLCICVLFINVKYRNIRMIKMSSPNINNGIIAGSIICYASVVVYGLDSRFLTPRGIGIACNAVTIALSIGFTLSFGCLFTKTWRIYKIFTAAKTMEKVSIKDTHLYFIITLLVSIDIFVFLLWVFLSPF--NVEESELEQIVYQNADVIDSFFYHKCTCEYQLHFTVTM---YCYKGFLLIFGLXINFISRSQCI 717
            A+  A+  I N++ +L+ Y L L   D+          FYD ++ GP   M+ G      T  +AE    + L Q+++A      A +               + +P+  +  PS ++ N AI+K+ ++++WKRV  L +   Q+F     DL+  L    IE +  + FS    T   +L      DVRII G F    A ++FC AY+  +YG KYQW+     + +WW+ V T      C  K  L A +GY+ +    +    +++I G+T +        Q   +Y       G S           +   +A+D +++ A TL + ++T    +         Y + +    + + M  ++F G+TG++ +  ++GE R G ++  QF+            SR     +G ++  +  ++I + T    F+G    KD+  I       SL    IL  L   G+++    LF N+K RN ++IKMSSP +NN II G ++ YAS+ ++GLD  F++ +     C   T  L++G+T +FG +F KTWR++ IF   K M+K  IKD  L  I+  ++ ID+ + + W  + P    VE+  +E         I     H   CE   H T+ +   Y YKG L++FG  + + +R+  I
Sbjct:   80 AVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADK---------------KKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQ-DVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG---NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQ--------QYEREYNNKRSGVGPS-----------KFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF--RNGE-RMGTIKFTQFQD-----------SREV--KVGEYNAVADTLEIINDT--IRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVK-MKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEH---CE-NTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSI 683
The following BLAST results are available for this feature:
BLAST of TCONS_00065449-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABR28.166e-6827.48Gamma-aminobutyric acid type B receptor subunit 2 ... [more]
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