TCONS_00065258 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065258
Unique Name	TCONS_00065258
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1305

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_435:137697..140662+
coding sequence from alignment at scaffold_435:137697..140662+

transcript sequence

>TCONS_00065258 ID=TCONS_00065258|Name=TCONS_00065258|organism=Clytia hemisphaerica|type=transcript|length=1305bp
agaaaggAGATCTTAGAGagttagagtcaaactttgaagatatcttttta
ttcatttgattgttttttaagccaccttcaacatccaaaggactttgagt
gcgttcagctacagctttaaccggcgtgcgacgccgggtaccggctagtt
tgtGTCCATTTGTATaacaaatttgattggttaaaataaaagaaatgttg
CAAATAATCTTCTTGAGATTCATTAATTTAAAGTTAGATGGCTCCTCCCA
AATCAAGGAAGCTGGCTGTTATGGGCTTTCGGTCTGTTGGCAAATCATCT
TTGTGCATTCAGTTTGTCGAGGGCCAATTTGTTGACTCATACGATCCAAC
CATCGAAAACAcatttaattcaaaaatcaaacacAGAGGTCATGAATTTC
ATATTGAATTAGTGGATACTGCTGGACAAGATGAGTACTCAATCATCCCG
CAATCATATGTTGTTGATAATCATGGTTATATTCTCGTTTATTCCGTCAC
CTCTaagaaaagttttgaagtTGTCAAAGATATAAGAGACAGACTACTTG
ATCTAAGTGGAGTTGAAACAATTCCCATCCTGCTTGTTGGAAACAAAACA
GATTTACACATGGAAAGGGTAATTTCTCCTGAAGAGGGAAGCAGTTTGGC
TAAAAAATGGAAAGCAGGCTTTCTTGAATCATCTGCTAAAGAAAATAAGG
CTGTCCTTGGTGTTTTTCATGCAATGCTTGATGTTATTTCCAAACAAGAA
AATGGTGGTCAAAAATCTGATGGATCTGGTGGTTGTTCAATTTCATAATC
TTTCTATGTGTTGCTACTGCTACTGTTGTTTGTATGTTACCCTTTTTCAT
CATTGTAGTTGCCTGCCTGTTGTGCAGGAATTATTGATGGTAGTTCGAGG
TGATATCATTTCGAGGAAATATCATTTCGATGAAATATCCTTACTATTTT
TCTCTCTGCTTTTTGTAGTGTTTGTTGTTGAATAGTTCTGTCCAATTTTT
ATAGAAATAAATCACTGCACAATAGATTAGAcaaggaaaactttttttgc
tggATTTGGTGTAGACTACGTAACACTTTCAGAGATTGTaaatactttat
attttttattatttcattagAACTAAGTAGAGCTACATTCATTTTATTCA
TAATTACTTAACAACAGGCACGTAATCATTATTTTTCTCAGATTATGTGT
AAATATTTTAGCAAAACGAAAAGTTTTCGCTCTAGGCAGGCTATCAGCTA
GTTTGGGTCATGTAAATGCCCTATATTGAAGTTGGAGTTTGGTTATATGA
TTAAG

Run BLAST on NCBI

protein sequence of TCONS_00065258-protein

>TCONS_00065258-protein ID=TCONS_00065258-protein|Name=TCONS_00065258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MAPPKSRKLAVMGFRSVGKSSLCIQFVEGQFVDSYDPTIENTFNSKIKHR
GHEFHIELVDTAGQDEYSIIPQSYVVDNHGYILVYSVTSKKSFEVVKDIR
DRLLDLSGVETIPILLVGNKTDLHMERVISPEEGSSLAKKWKAGFLESSA
KENKAVLGVFHAMLDVISKQENGGQKSDGSGGCSIS

Run BLAST on NCBI

transcript from alignment at scaffold_435:137697..140662+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065258 ID=TCONS_00065258|Name=TCONS_00065258|organism=Clytia hemisphaerica|type=transcript|length=2966bp|location=Sequence derived from alignment at scaffold_435:137697..140662+ (Clytia hemisphaerica)
agaaaggAGATCTTAGAGagttagagtcaaactttgaagatatcttttta
ttcatttgattgttttttaagccaccttcaacatccaaaggactttgagt
gcgttcagctacagctttaaccggcgtgcgacgccgggtaccggctagtt
tgtGTCCATTTGTATaacaaatttgattggttaaaataaaagaaatgttg
CAAATAATCTTCTTGAGGCAAGGGGACACAAGGGTTTTTGTATAACTCTC
AATTGcaacatgaaaattttgttgctGCAACAAAAACATCTAGCGGAAAA
TGTTGCAAAATAGCAATATCTGATGAATGAAACATATCCATGCgattgaa
acaaattttttttttgaacatAAACATATATAAACAAAGGACCAATAACG
ATGTTTTATCAATTTCGTAAATTCAGATTCATTAATTTAAAGTTAGATGG
CTCCTCCCAAATCAAGGAAGCTGGCTGTTATGGGCTTTCGGTCTGTTGGT
AAGCCTTTTCATGAATTTCGTTTACGTCCATATAAAATGAGTTTTTAGAA
TAATAGTCAAATTTTGTTTGTAGCTTCAATAATGGGAGTTATTATTCAAA
AGTTAAGCAAGCTTTTAAACCTCTTTGTTGTGTCACCCATTGTTGATGAc
ataaaacaaaattatttcaaatgttttcattcatttcttcAGGCAAATCA
TCTTTGTGCATTCAGTTTGTCGAGGGCCAATTTGTTGACTCATACGATCC
AACCATCGAAAACAGTAAGAAAGTTTATCAAAAAGGATACATTCATTAAC
AGCCCCTTCAAAAGTACTTAGTTGTAAGGATGCTAAACTATTTAATACCA
TTTTTTACTTTAGATCATGATATCAAgactttttttggcaaaactgcATT
GTGTATAGTCTACTATATGAATCATGTCAAATTtgataactttaaaaaaa
aaagatctgtTTGATAAGCTTATTTTGAGTAACATATTGTTTGTTACATA
GcatttaattcaaaaatcaaacacAGAGGTCATGAATTTCATATTGAATT
AGTGGATACTGCTGGACAAGTAAGTGGAATTTCATAGATATTATTATGTT
CATAACCaagtttttcaattatttttaagagTTGTGTATCAAGCTAGGAT
TTGTCATTCTGCAAACTGTATCATCTGTTGTCAAATAATGACCAGAAAGA
CTAAATACATAATTATGTGTTCCATTTCTTTAGGATGAGTACTCAATCAT
CCCGCAATCATATGTTGTTGATAATCATGGTTATATTCTCGTTTATTCCG
TCACCTCTaagaaaaggtttttttattgattttaattgTATGTATTATAA
GTCTTTAGTCTTCACTATCCAGAGTATTTATAATAATATTATCCCCTTCA
TTATTTATAGATAATCTTTCTAATAACAACAATGCCAACataaacatttt
ctcaaatgaatttttaaaatgaagcacagccgaaaaaaatttaaaagata
aaaagcTGTGCATTTCTAGTACCTTTCATTTTGATTTGTGttttccataa
tttttttttcccatCAAATTttatcgttgtttttttttcagttttgaagt
TGTCAAAGATATAAGAGACAGACTACTTGATCTAAGTGGAGTTGAAACGT
AAGTTCTCAAAGTCCATACacatatttttgttatttttcaattattaCAA
AACATCACGGAGATGGCCTATGTTCAACTGAACTGTCCCTCTTGAAATGG
TGAGTTTTATTTTGATCTGTCTTAACTGGTTTTGATACTTTTACTTCATT
ATTGAATTTCATGTCGCTTTCTCCTTTTAGAATTCCCATCCTGCTTGTTG
GAAACAAAACAGATTTACACATGGAAAGGTTTGTCAAAAGCTAAGAAAGA
ATCAAGTAAACATTTGAAGTTTGACTAAGCATTTGACTTATCTTGTCTAG
TGTGTATTTGAAAAATCATTATAATCAATTTTATCTCTTACGATGAGTTC
ATGATTTCATTGCAATTTTGATTATCATAAATTGTTTTTAGGGTAATTTC
TCCTGAAGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTG
AATCATCTGCTAAAGAAAATAAGGTCAGTATAACTTTGCTTGATGTAAAT
CTAAAGGCTGTGATCAAATCGCTGCTATTAAAACAACTTGAttcattgca
aaaaaaatttggtacATTATAAGTAGTGTAGATTATTTACTTCGAAGACC
AAAACTAGATTTCTAAGTTAGGAAACACCCAAAGTGTTTTGCTATATTTT
ATTGTATACAGAATTTGGTAACACTCAGGCCTGTGAAATATTAACCTTAC
TTTTTTGTAGGCTGTCCTTGGTGTTTTTCATGCAATGCTTGATGTTATTT
CCAAACAAGAAAATGGTGGTCAAAAATCTGATGGATCTGGTGGTTGTTCA
ATTTCATAATCTTTCTATGTGTTGCTACTGCTACTGTTGTTTGTATGTTA
CCCTTTTTCATCATTGTAGTTGCCTGCCTGTTGTGCAGGAATTATTGATG
GTAGTTCGAGGTGATATCATTTCGAGGAAATATCATTTCGATGAAATATC
CTTACTATTTTTCTCTCTGCTTTTTGTAGTGTTTGTTGTTGAATAGTTCT
GTCCAATTTTTATAGAAATAAATCACTGCACAATAGATTAGAcaaggaaa
actttttttgctggATTTGGTGTAGACTACGTAACACTTTCAGAGATTGT
aaatactttatattttttattatttcattagAACTAAGTAGAGCTACATT
CATTTTATTCATAATTACTTAACAACAGGCACGTAATCATTATTTTTCTC
AGATTATGTGTAAATATTTTAGCAAAACGAAAAGTTTTCGCTCTAGGCAG
GCTATCAGCTAGTTTGGGTCATGTAAATGCCCTATATTGAAGTTGGAGTT
TGGTTATATGATTAAG

Coding sequence (CDS) from alignment at scaffold_435:137697..140662+

>TCONS_00065258 ID=TCONS_00065258|Name=TCONS_00065258|organism=Clytia hemisphaerica|type=CDS|length=4488bp|location=Sequence derived from alignment at scaffold_435:137697..140662+ (Clytia hemisphaerica)
ATGGCTCCTCCCAAATCAAGGAAGCTGGCTGTTATGGGCTTTCGGTCTGT
TGGCAAATCATCTTTGTGCATTCAGTTTGTCGAGGGCCAATTTGTTGACT
CATACGATCCAACCATCGAAAACAcatttaattcaaaaatcaaacacAGA
GGTCATGAATTTCATATTGAATTAGTGGATACTGCTGGACAAGATGAGTA
CTCAATCATCCCGCAATCATATGTTGTTGATAATCATGGTTATATTCTCG
TTTATTCCGTCACCTCTaagaaaagttttgaagtTGTCAAAGATATAAGA
GACAGACTACTTGATCTAAGTGGAGTTGAAACAATTCCCATCCTGCTTGT
TGGAAACAAAACAGATTTACACATGGAAAGGGTAATTTCTCCTGAAGAGG
GAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTGAATCATCTGCT
AAAGAAAATAAGGCTGTCCTTGGTGTTTTTCATGCAATGCTTGATGTTAT
TTCCAAACAAGAAAATGGTGGTCAAAAATCTGATGGATCTGGTGGTTGTT
CAATTTCATAAATGGCTCCTCCCAAATCAAGGAAGCTGGCTGTTATGGGC
TTTCGGTCTGTTGGCAAATCATCTTTGTGCATTCAGTTTGTCGAGGGCCA
ATTTGTTGACTCATACGATCCAACCATCGAAAACAcatttaattcaaaaa
tcaaacacAGAGGTCATGAATTTCATATTGAATTAGTGGATACTGCTGGA
CAAGATGAGTACTCAATCATCCCGCAATCATATGTTGTTGATAATCATGG
TTATATTCTCGTTTATTCCGTCACCTCTaagaaaagttttgaagtTGTCA
AAGATATAAGAGACAGACTACTTGATCTAAGTGGAGTTGAAACAATTCCC
ATCCTGCTTGTTGGAAACAAAACAGATTTACACATGGAAAGGGTAATTTC
TCCTGAAGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTG
AATCATCTGCTAAAGAAAATAAGGCTGTCCTTGGTGTTTTTCATGCAATG
CTTGATGTTATTTCCAAACAAGAAAATGGTGGTCAAAAATCTGATGGATC
TGGTGGTTGTTCAATTTCATAAATGGCTCCTCCCAAATCAAGGAAGCTGG
CTGTTATGGGCTTTCGGTCTGTTGGCAAATCATCTTTGTGCATTCAGTTT
GTCGAGGGCCAATTTGTTGACTCATACGATCCAACCATCGAAAACAcatt
taattcaaaaatcaaacacAGAGGTCATGAATTTCATATTGAATTAGTGG
ATACTGCTGGACAAGATGAGTACTCAATCATCCCGCAATCATATGTTGTT
GATAATCATGGTTATATTCTCGTTTATTCCGTCACCTCTaagaaaagttt
tgaagtTGTCAAAGATATAAGAGACAGACTACTTGATCTAAGTGGAGTTG
AAACAATTCCCATCCTGCTTGTTGGAAACAAAACAGATTTACACATGGAA
AGGGTAATTTCTCCTGAAGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGC
AGGCTTTCTTGAATCATCTGCTAAAGAAAATAAGGCTGTCCTTGGTGTTT
TTCATGCAATGCTTGATGTTATTTCCAAACAAGAAAATGGTGGTCAAAAA
TCTGATGGATCTGGTGGTTGTTCAATTTCATAAATGGCTCCTCCCAAATC
AAGGAAGCTGGCTGTTATGGGCTTTCGGTCTGTTGGCAAATCATCTTTGT
GCATTCAGTTTGTCGAGGGCCAATTTGTTGACTCATACGATCCAACCATC
GAAAACAcatttaattcaaaaatcaaacacAGAGGTCATGAATTTCATAT
TGAATTAGTGGATACTGCTGGACAAGATGAGTACTCAATCATCCCGCAAT
CATATGTTGTTGATAATCATGGTTATATTCTCGTTTATTCCGTCACCTCT
aagaaaagttttgaagtTGTCAAAGATATAAGAGACAGACTACTTGATCT
AAGTGGAGTTGAAACAATTCCCATCCTGCTTGTTGGAAACAAAACAGATT
TACACATGGAAAGGGTAATTTCTCCTGAAGAGGGAAGCAGTTTGGCTAAA
AAATGGAAAGCAGGCTTTCTTGAATCATCTGCTAAAGAAAATAAGGCTGT
CCTTGGTGTTTTTCATGCAATGCTTGATGTTATTTCCAAACAAGAAAATG
GTGGTCAAAAATCTGATGGATCTGGTGGTTGTTCAATTTCATAAATGGCT
CCTCCCAAATCAAGGAAGCTGGCTGTTATGGGCTTTCGGTCTGTTGGCAA
ATCATCTTTGTGCATTCAGTTTGTCGAGGGCCAATTTGTTGACTCATACG
ATCCAACCATCGAAAACAcatttaattcaaaaatcaaacacAGAGGTCAT
GAATTTCATATTGAATTAGTGGATACTGCTGGACAAGATGAGTACTCAAT
CATCCCGCAATCATATGTTGTTGATAATCATGGTTATATTCTCGTTTATT
CCGTCACCTCTaagaaaagttttgaagtTGTCAAAGATATAAGAGACAGA
CTACTTGATCTAAGTGGAGTTGAAACAATTCCCATCCTGCTTGTTGGAAA
CAAAACAGATTTACACATGGAAAGGGTAATTTCTCCTGAAGAGGGAAGCA
GTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTGAATCATCTGCTAAAGAA
AATAAGGCTGTCCTTGGTGTTTTTCATGCAATGCTTGATGTTATTTCCAA
ACAAGAAAATGGTGGTCAAAAATCTGATGGATCTGGTGGTTGTTCAATTT
CATAAATGGCTCCTCCCAAATCAAGGAAGCTGGCTGTTATGGGCTTTCGG
TCTGTTGGCAAATCATCTTTGTGCATTCAGTTTGTCGAGGGCCAATTTGT
TGACTCATACGATCCAACCATCGAAAACAcatttaattcaaaaatcaaac
acAGAGGTCATGAATTTCATATTGAATTAGTGGATACTGCTGGACAAGAT
GAGTACTCAATCATCCCGCAATCATATGTTGTTGATAATCATGGTTATAT
TCTCGTTTATTCCGTCACCTCTaagaaaagttttgaagtTGTCAAAGATA
TAAGAGACAGACTACTTGATCTAAGTGGAGTTGAAACAATTCCCATCCTG
CTTGTTGGAAACAAAACAGATTTACACATGGAAAGGGTAATTTCTCCTGA
AGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTTTCTTGAATCAT
CTGCTAAAGAAAATAAGGCTGTCCTTGGTGTTTTTCATGCAATGCTTGAT
GTTATTTCCAAACAAGAAAATGGTGGTCAAAAATCTGATGGATCTGGTGG
TTGTTCAATTTCATAAATGGCTCCTCCCAAATCAAGGAAGCTGGCTGTTA
TGGGCTTTCGGTCTGTTGGCAAATCATCTTTGTGCATTCAGTTTGTCGAG
GGCCAATTTGTTGACTCATACGATCCAACCATCGAAAACAcatttaattc
aaaaatcaaacacAGAGGTCATGAATTTCATATTGAATTAGTGGATACTG
CTGGACAAGATGAGTACTCAATCATCCCGCAATCATATGTTGTTGATAAT
CATGGTTATATTCTCGTTTATTCCGTCACCTCTaagaaaagttttgaagt
TGTCAAAGATATAAGAGACAGACTACTTGATCTAAGTGGAGTTGAAACAA
TTCCCATCCTGCTTGTTGGAAACAAAACAGATTTACACATGGAAAGGGTA
ATTTCTCCTGAAGAGGGAAGCAGTTTGGCTAAAAAATGGAAAGCAGGCTT
TCTTGAATCATCTGCTAAAGAAAATAAGGCTGTCCTTGGTGTTTTTCATG
CAATGCTTGATGTTATTTCCAAACAAGAAAATGGTGGTCAAAAATCTGAT
GGATCTGGTGGTTGTTCAATTTCATAAATGGCTCCTCCCAAATCAAGGAA
GCTGGCTGTTATGGGCTTTCGGTCTGTTGGCAAATCATCTTTGTGCATTC
AGTTTGTCGAGGGCCAATTTGTTGACTCATACGATCCAACCATCGAAAAC
AcatttaattcaaaaatcaaacacAGAGGTCATGAATTTCATATTGAATT
AGTGGATACTGCTGGACAAGATGAGTACTCAATCATCCCGCAATCATATG
TTGTTGATAATCATGGTTATATTCTCGTTTATTCCGTCACCTCTaagaaa
agttttgaagtTGTCAAAGATATAAGAGACAGACTACTTGATCTAAGTGG
AGTTGAAACAATTCCCATCCTGCTTGTTGGAAACAAAACAGATTTACACA
TGGAAAGGGTAATTTCTCCTGAAGAGGGAAGCAGTTTGGCTAAAAAATGG
AAAGCAGGCTTTCTTGAATCATCTGCTAAAGAAAATAAGGCTGTCCTTGG
TGTTTTTCATGCAATGCTTGATGTTATTTCCAAACAAGAAAATGGTGGTC
AAAAATCTGATGGATCTGGTGGTTGTTCAATTTCATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040917	XLOC_040917	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065258-protein	TCONS_00065258-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_435	supercontig	scaffold_435:137697..140662 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.82705	3.95568	6.8799	11.0734	21.4107	19.2167	17.6401	25.7153	7.39309	5.28437	5.95752	8.65926	4.96037	10.3822	7.859	5.13604	7.9002	9.90284	6.25088	6.78361	7.2015	9.42867	6.78213	6.5383	18.9402	21.787	10.482	10.3261	8.53358	7.75791

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR020849	Small_GTPase_Ras
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016020	membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Blast

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BLAST of TCONS_00065258 vs. Swiss-Prot (Human)
Match: RHEB (GTP-binding protein Rheb OS=Homo sapiens GN=RHEB PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.179e-73
Identity = 111/164 (67.68%), Postives = 131/164 (79.88%), Query Frame = 1

Query:  238 MAPPKSRKLAVMGFRSVGKSSLCIQFVEGQFVDSYDPTIENTFNSKIKHRGHEFHIELVDTAGQDEYSIIPQSYVVDNHGYILVYSVTSKKSFEVVKDIRDRLLDLSGVETIPILLVGNKTDLHMERVISPEEGSSLAKKWKAGFLESSAKENKAVLGVFHAML 729
            M   KSRK+A++G+RSVGKSSL IQFVEGQFVDSYDPTIENTF   I   G E+H++LVDTAGQDEYSI PQ+Y +D +GYILVYSVTS KSFEV+K I  +LLD+ G   IPI+LVGNK DLHMERVIS EEG +LA+ W A FLESSAKEN+  + VF  ++
Sbjct:    1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

The following BLAST results are available for this feature:

BLAST of TCONS_00065258 vs. Swiss-Prot (Human)

BLAST of TCONS_00065258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHEB	2.179e-73	67.68	GTP-binding protein Rheb OS=Homo sapiens GN=RHEB P...	[more]

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TCONS_00065258 (transcript) - C. hemisphaerica