TCONS_00064999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064999
Unique NameTCONS_00064999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064999 ID=TCONS_00064999|Name=TCONS_00064999|organism=Clytia hemisphaerica|type=transcript|length=642bp
TTGACGAAGCTCAATACAATAACGTCCTTGGCATGATCGTCAAAGGTGTC
GATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagGATATT
ACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCATAGCT
AAACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAAGATAC
TAACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGCTGCAG
GAGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACAGAGTG
CAAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCCCCACCGC
TCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTTGGTGAAG
CATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAACATTGCA
TAATTGTTTCGACCCAATATAACCTCGATTGGCTGACTGAAGAAGAAGGT
TTTTACTTTAAAATGCAATTTGAATGCTCTCAGACGTCCTACATTATTGG
CTGGCAGCCCTGGCATTGGATCTTGTTCATGTGATTCATTATTCACGATT
TTGCATGTTTGTTTTGTTCCATCATGATACACTTGTAAATAG
Run BLAST on NCBI

protein sequence of TCONS_00064999-protein

>TCONS_00064999-protein ID=TCONS_00064999-protein|Name=TCONS_00064999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MRALPCGGKKIEREGYYIQPTIFADVTDEMTIAKQEIFGPVLSILKFKDT
NEVIRRANATKFGLAAGVLTNDLKTAMKVINRVQAGTVWVNCYNILFPTA
PFGGYKQSGFGREVGEASLKEYTVTKSVVMNIA
Run BLAST on NCBI

transcript from alignment at scaffold_428:177568..181826+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064999 ID=TCONS_00064999|Name=TCONS_00064999|organism=Clytia hemisphaerica|type=transcript|length=4259bp|location=Sequence derived from alignment at scaffold_428:177568..181826+ (Clytia hemisphaerica)
TTGACGAAGCTCAATACAATAACGTCCTTGGCATGATCGTCAAAGGTGTC
GATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagGATATT
ACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCATAGCT
AAACAAGAGGTAAGGGTAATAGGGCGAGTCAAAGAGAGTTGGGAACGAGG
TATTTTTGTTCAACTGACTGTTTTTGTGGACGTCACTGACGATtttacag
tgaggattggtttatttgattattttcagtggggacagaaattggaagat
aattttccaccggggacgatattttggccaatttttccaatgggaagggT
TCAAGTAATATACAAGATACCTTACAACCTGAGTGATGATTCTCTCTACC
TCTTAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAAGATACTAA
CGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGCTGCAGGAG
TTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACAGAGTGCAA
GCTGGTACAGTATGGTATGATGGATATGATGTTTTTCGTTAATTATTTAC
ATCCCTATCTTCTAATAGTAGGGGACCAagccgtgacatcttttttacga
cctagccatttttagtctattccaaagaacagtatattacaagatatttt
tgagagggaggacgcggattaagcctgggaaaactttttatgaccaaaat
agtgacgccataggcaaaactgcaagatAAAATAAGGGATAGGAAAAtag
ctgatttttaaaaatcaaaataaacaaaaatgattggtaccatctgatag
agcatgaaattctgagcaaaaaaatgtattacaacaactctctgactaaa
acacacaaagaaatacagccgcttgaagttcaaaaacataccgacgtcag
tacaatcaagacaagatttgacgtcaaatcacagtagagctgacagttat
ttttttgtgtgttttatcTACTATAATgtgcttttccagaaaaaacttta
ataggggggggggtaggatacaacatttttttggaaatttaccccctgga
cattgtgacttttgacctcCGGACAGCAGATCTAACCCCAcggacaagca
ttagttgacccccCTGGACACTCAagattaccctcaaacagactAAAATT
ACCCAGAAACAGAGCACGTTTACCCCCGAAACAAGGTAatatttgtagat
ttttcactacccctggacactatatcctccaccccctatgtactaacatt
ttttggaagagcccaattaaCGTTAATAGTGGTCATCTTATAAACGGTGG
AAGCAGTTTTTGTACATTTTCTCCACACTGAACATACTACTTATATATAG
CAATCCTAATTCCAATTATCCCATTTGGCCATGGTATTATAATCAAActg
accgtagtgcagtggtagagcatccggctatgGTTCGCAAGGTTGTAGGT
TCAACCCCccggccgggtcataccaaagattcccaaaatggtacttgatg
cctctctgctagatgctcagcaactaagagaatCAAGGGTAGGGGGAGCA
Atacagggagaaagagtggcgccctcccctaccttcgggtagatagctat
cgaaagaggagctttCGGGTCGCCTCCAACTGTGGTCGCAGACTTATTTA
CTACCTATAATCAAACAAATACAGTTCATCGCAAAAACTTTGTGAGAGAC
AACTTGTAAAAATGTATTGCCTCGACCTGATAAATCTTACTATTGCCAGC
TTCAAGAAAATACTAGCAATATATCGTCAATATATTGCCAATATATTGAG
GCAATATGTtgcgtagtgtatgtagccctttacaAACTTATCATCAAGAC
GAAACTTTTTGTTTTAGGGTGAACTGCTACAATATCCTTTTCCCCACCGC
TCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTGTAAGTGA
AACATTCAACTTtcaattatgaaatatttttaggcttacaatGTGACCTA
TAAAAGTGTAAAGGTTTATCTATGTCatagatttgaaaaatgaaaaccgA
AAAGCACTTGAACAAACACATACTGTCCCCTTTTTCAGTCACTTTGAATT
TCCACTTCAGGAAGAATGTGACCATGTTTTTGCTTCAATACCTATAAAAA
TAACATATCAATTCGAAAAATTCAGCAAGTAAGGAAAAAATTTCCCTATC
AACAATTACGACCTGTATATTAACCTGTATCATGATAGTCGGACGCCAAT
AAGTTAATACCTTAAACTGAACATGTTGCATAATGTATCTTTGCTGAATA
CAATTTAATagaattttttattaatttttatactgaaacacccgaaaaat
acCGGGCGTGTGCCACCAGTTtagaatttaaaacaatgaaactggTGACA
AACTCTCGGTGtttttcgggtgcttccgtatataaaagattacgtcatga
atatcaagaatttttcaaactctttttCTCAGTGGTGAAGCATCGTTGAA
AGAATACACTGTCACCAAGTCGGTAAGATAGCTTGTCTAAAGTTCTTGAA
TTTGTTCTTGAAGTCGGTTTCTACAATTATGAACCTGTTTTCTTACGTTA
GGCTCTTtcagaaaatgattgaatatggGAAGGATAGAGGGTATAacgtt
tttttgaaatttattctcCAAACATTTATGGCTTttgacacccccccccc
ccccNNNNNNNNNNNNNccccccaaacagagcaagtttacccccggacaa
gccaaattttttagttttttcactACACCCCCCTGGACATTTATATCCTT
CACCCCAATGCATGGACATTTATTGGAAGAGCCCCTTACAAAACCGATGC
AGAATAGTAATTTTTACCAGAAATGTAGACCAATCTTTCCATTCTTATAG
aacttttttattcttcaaaaCGTTCTGAAAATGGTCGCCATTACCTAACT
TTATACTTTAGTAgctgtacaaactttcgcgagcagaaacttgcgaattt
tagcccttttttacgaaagtaaatgtctttgaaaattcttgagagGGTAa
ttttatgctcgcgaaaaataatCTGTAAAGAACATTTACTCAAAATTTTC
CTCTTTGGTGATAACAAGGATAAAATTTAGTGTAGATATTGTGCAAAAGT
CCATCAATTGTGGTTTGAATACATTTAAACGATCAAAACGATAGTTTTAT
GCACCGAAAACTTAAACATTCTACTAGAAATATTCCTCAtgcgcgaaagt
ttatgctcacgaagaattattttttgtcgaatttgcgaaagtaaatttCG
TAGATTTCGCGATTTTATGGACCTCGTGAataaagtttctgctcgcgaaa
ttTTGTACGCCTCAAGTAGTCGGTAAATCAAACCATCACGCTCTTTTGTT
TCGATGAAGcattttaaaaattgcaatttcaGTCTGGatgaaacctaaaa
atgtttttagtgTAATGGCCTCTGAAATATGGTGGTCGATGTCAGAGTTA
CAGGTTGTCATGAACATTTTTGCTTAATTGCTTATATCGAGAGTTATCAG
CTTTATGACTAACAGTGTTTAAGAGGGCTATATACATATTTCGTTATTTA
CGTTACGTCCACATATTTCGTTATACTTCTAGAATTTGTNGCAATTTCAG
TCTGGatgaaacctaaaaatgtttttagtgTAATGGCCTCTGAAATATGG
TGGTCGATGTCAGAGTTACAGGTTGTCATGAACATTTTTGCTTAATTGCT
TCTATCGTTATATCGAGAGTTATCAGCTTTATGACTAACAGTGTCTAAGA
GGGCTTCTACCTTACTATTCCTAGTAGGAATTCCGCCGCCCACAACCTCA
ACCTGGTTAATTTGTCCGCCTTTAAGTTTTGATTCCTCTTtgtttttacg
aagaaagataGATTATACATTATACATGCGTGttattaatgcaggaattg
tcaTCCGTGTTCAGTGTTAAATCGTGTCTTAATTGTTGTTCTATTTCAGG
TTGTCATGAACATTGCATAATTGTTTCGACCCAATATAACCTCGATTGGC
TGACTGAAGAAGAAGGTTTTTACTTTAAAATGCAATTTGAATGCTCTCAG
ACGTCCTACATTATTGGCTGGCAGCCCTGGCATTGGATCTTGTTCATGTG
ATTCATTATTCACGATTTTGCATGTTTGTTTTGTTCCATCATGATACACT
TGTAAATAG

Coding sequence (CDS) from alignment at scaffold_428:177568..181826+

>TCONS_00064999 ID=TCONS_00064999|Name=TCONS_00064999|organism=Clytia hemisphaerica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_428:177568..181826+ (Clytia hemisphaerica)
ATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagGATATTA
CATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCATAGCTA
AACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAAGATACT
AACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGCTGCAGG
AGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACAGAGTGC
AAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCCCCACCGCT
CCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTTGGTGAAGC
ATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAACATTGCAT
AAATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagGATAT
TACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCATAGC
TAAACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAAGATA
CTAACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGCTGCA
GGAGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACAGAGT
GCAAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCCCCACCG
CTCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTTGGTGAA
GCATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAACATTGC
ATAAATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagGAT
ATTACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCATA
GCTAAACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAAGA
TACTAACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGCTG
CAGGAGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACAGA
GTGCAAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCCCCAC
CGCTCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTTGGTG
AAGCATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAACATT
GCATAAATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaagG
ATATTACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGACCA
TAGCTAAACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCAAA
GATACTAACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTAGC
TGCAGGAGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAACA
GAGTGCAAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCCCC
ACCGCTCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTTGG
TGAAGCATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAACA
TTGCATAAATGAGGGCGCTTCCCTGTGGTggcaaaaaaatcgaaagagaa
gGATATTACATTCAGCCGACTATCTTTGCTGACGTTACTGACGAAATGAC
CATAGCTAAACAAGAGATTTTCGGACCAGTTCTATCCATCTTGAAATTCA
AAGATACTAACGAAGTAATAAGACGAGCAAATGCAACCAAATTTGGACTA
GCTGCAGGAGTTTTGACCAATGACCTAAAGACAGCGATGAAAGTGATAAA
CAGAGTGCAAGCTGGTACAGTATGGGTGAACTGCTACAATATCCTTTTCC
CCACCGCTCCTTTCGGAGGTTACAAGCAGTCTGGTTTTGGAAGAGAGGTT
GGTGAAGCATCGTTGAAAGAATACACTGTCACCAAGTCGGTTGTCATGAA
CATTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040755XLOC_040755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064999-exon-scaffold_428-1491911889:177568..177726TCONS_00064999-exon-scaffold_428-1491911889:177568..177726Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1510915933:177568..177726TCONS_00064999-exon-scaffold_428-1510915933:177568..177726Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1575043694:177568..177726TCONS_00064999-exon-scaffold_428-1575043694:177568..177726Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1491911889:177974..178131TCONS_00064999-exon-scaffold_428-1491911889:177974..178131Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1510915933:177974..178131TCONS_00064999-exon-scaffold_428-1510915933:177974..178131Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1575043694:177974..178131TCONS_00064999-exon-scaffold_428-1575043694:177974..178131Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1491911889:179485..179559TCONS_00064999-exon-scaffold_428-1491911889:179485..179559Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1510915933:179485..179559TCONS_00064999-exon-scaffold_428-1510915933:179485..179559Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1575043694:179485..179559TCONS_00064999-exon-scaffold_428-1575043694:179485..179559Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1491911889:180100..180139TCONS_00064999-exon-scaffold_428-1491911889:180100..180139Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1510915933:180100..180139TCONS_00064999-exon-scaffold_428-1510915933:180100..180139Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1575043694:180100..180139TCONS_00064999-exon-scaffold_428-1575043694:180100..180139Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1491911889:181617..181826TCONS_00064999-exon-scaffold_428-1491911889:181617..181826Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1510915933:181617..181826TCONS_00064999-exon-scaffold_428-1510915933:181617..181826Clytia hemisphaericaexon
TCONS_00064999-exon-scaffold_428-1575043694:181617..181826TCONS_00064999-exon-scaffold_428-1575043694:181617..181826Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064999-proteinTCONS_00064999-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:177568..181826 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.1303	2.39698	1.11325	1.54295	4.30925	3.2306	3.47622	3.45163	2.48561	3.3354	3.32043	2.29186	25.6113	43.2353	13.0736	9.78603	3.99803	11.2848	1.56777	2.09627	1.82204	3.59355	3.00623	3.07474	3.43082	3.69001	2.35932	0.839312	3.91047	3.42822
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015590Aldehyde_DH_dom
IPR016161Ald_DH/histidinol_DH
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00064999 vs. Swiss-Prot (Human)
Match: AL1A2 (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.603e-46
Identity = 77/147 (52.38%), Postives = 103/147 (70.07%), Query Frame = 1 
Query:    7 KLNTITSLA*SSKVSMRALPCGGKKIEREGYYIQPTIFADVTDEMTIAKQEIFGPVLSILKFKDTNEVIRRANATKFGLAAGVLTNDLKTAMKVINRVQAGTVWVNCYNILFPTAPFGGYKQSGFGREVGEASLKEYTVTKSVVMNI 447
            + N I  L  S       L CGGK + R+G++I+PT+F++VTD+M IAK+EIFGPV  IL+FK  +EVI RAN + FGL A V TND+  A+ V + +QAGTVW+NCYN L   +PFGG+K SG GRE+GE  L+EY+  K+V + I
Sbjct:  367 QYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKI 513
The following BLAST results are available for this feature:
BLAST of TCONS_00064999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AL1A21.603e-4652.38Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]
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