TCONS_00064705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064705
Unique NameTCONS_00064705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064705 ID=TCONS_00064705|Name=TCONS_00064705|organism=Clytia hemisphaerica|type=transcript|length=2134bp
CACGACATGAAGGGGCCGATGGAGCAGGTCCCAGTGGATTGCATTCTGCT
TCTAGCTCTCTTCTTGAACTTACAGTTCGGGGTCGAGGTCGGGGACGCGG
AGGTCGCCATTCATCGCATCGCTGTCCCATCTGCTTATTGTTGTTTCCAA
GCCGAATGACCATGATCGAACACAAGAGAAAACATACCAAAGTACACAAA
TGTAAAATTTGCAATGAAGGTTTTTACACGGAAGACCGTCTAGAGAAACA
TGCAACCAAAGAAACACACAGTCACCCTTGTGACCAGTGCGAGCGGTCGT
ACGTCAACAAACAATCGCTCATGCGTCACAAATTATCTCACTCTGAGAAA
ACACACAAATGTGATCAATGTTCGCGCGCATTCAAAACACCGCGTGAACT
CNTCTCACTCTGAGAAAACACACAAATGTGATCAATGTTCACGCGCATTC
AAAACACCGCGCGAACTTAAATACCACGTCGAAGGAATGCACTCTTTATC
ACGTGATTTCGTTTGTGACGTTTGCCAAAAAGGATTTTCACGGCCGGAGA
AATTGAAACGCCATCTGATGATCCACGCCCCAGACCGCCCTGTTTACACG
TGTCCATTCAAGAACCACGTCGGCTGCGATAAGACATTCTATAGAAAAGA
CAAATTGACCAGACATTTATATTCACACTCGAAAGTCAAACCTTTCAAGT
GTGACCAATGTGATAAATCGTTCGCCCGCACGGATAATTTGAGAGAACAC
ATACGCTCTCACACAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAAA
AGGACAACCAGGACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCACA
ACGTAGAGAATGCAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGAA
CCACTCATTCAACAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCCG
CTTAGTCCGTGCGGCCAATAATGTTAAGAAAGACCAAGGAAAGAAAGTTC
GCAAGGAGAATATCGAGACGACGGAGATTCCGTTAGATGGAGCGGTTGCC
ATAGCAGCAGGGTTGAACCCGATGATCCAATCAACGCTCATGCCCAGTCC
CACGCAAAATGTGACGTCAGAACAACAACAAGCCTTTGTAGCAGCTGCTT
CAAGAGGAAACATCGAAACTCTATACACCATCAGTCACACCGGTCAAGGT
TCCGGTTCTCCGCAATTTCAAATCAGTCGGGCACAAGACACGATGGTACG
TAACGAACAACTACTACGTGAACAATTGGCACGTGAAGGTCTCACAACTC
GAGAGGTTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTACAGGACGC
GATTCAACGCAAACGGCAGCCGCTGACGCAACCACAACGGAACGTCTCCA
AGAAGTCATAACAAGGCAACTGGCAGAATCGGCCGCAGCGACGCAACAGG
GCCGTGAACTGGAAGAACCCACCATCTCTATGACGGTAGACCAAGACGGT
AACATTACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAGGGAGTCCT
CCCAGGACAGCTAGCAGGACAATTACAATTCACGACGCTCTTGAATTCTG
ACATTATAGCGATCGGCGAGGACGTGATACGACAGAATCGGAACGGTGTG
CTACCAGCTATGTTTCAACAGAAATTTGGAAACTAGTTAACCGTATTATC
TTCCCCGTGGTATGATTCTTTCTTCATTGTTATTAAGTTGGCAACTGGAA
AGAACCACTGTCGGTTGGCTATGTACTTGCAGTGACTTTGCTCGCCTAGA
TCTGATATAGGTCTGTGGCAGGGCTTACAATTGACACCGCATATGACATT
AAACTATTGTCGTTTGTGCAACTAAttggaaattttagttttatatggat
gaactAATCGTGTTTTTTAATTCATATTTAGAGTTCACATGTTTTCATGA
GATTTATGAGAGTAATTTAAAGAGGTGAAGtgtttcttcatttttgcctC
TTAAGAGATGGCTTCCGTACCTTCAATCCCCCAAAAAATATACATCATAG
TTTTTAAGCAATTCTAAACTCTTTTGAAAGATCACAATCCATCCCACCCC
ACTGTCAATGTTGAGTCTGAAACTGAACCATGGG
Run BLAST on NCBI

transcript from alignment at scaffold_421:142875..147966-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064705 ID=TCONS_00064705|Name=TCONS_00064705|organism=Clytia hemisphaerica|type=transcript|length=5092bp|location=Sequence derived from alignment at scaffold_421:142875..147966- (Clytia hemisphaerica)
CACGACATGAAGGGGCCGATGGAGCAGGTCCCAGTGGATTGCATTCTGCT
TCTAGCTCTCTTCTTGAACTTACAGGTACAAATTGTCAAGCGCATCCCGT
TTTTCATTTTACTTTTGTAGAGAAGTTCAAACCTCTCCCACTTCACTTGA
GAAACTGTTTACCAAAGTAACCAAAAAAGTAACTAGTATATGCCTGTTCT
TGCCATTTCTACCTTAATGGAGATTAAAAATGAACCTTTGGATGTGACTA
AGCCTCGGCGTTTCGACCGGAATGATAGTGACTTTTTGTTCAGCCTCCGA
AAATCAAGTCCTTTAAAGGGTCGAAAAGTTCTTGGAATTTTGACTAAGTT
TTGATATCTTTGCTGAAATTATTGAAGAATATAGTTCTAAAAACCTCAAT
CTCTCTACTAACGGTCGATATTTGAACTTTTGCCCGTTCATATCCGTCAT
CTCGTTTATCTAGTACTACTACCTCCCAAGATTAGATAAGATATGCAGTG
TTGCAACTTTTCTGTCTGTTGACAAAAATCCATCCAGGGGAGTTTTTCAT
TAGAATTTTTGTCTCAATTGTAAGCTTTGGAAGAACGTAATTTTGTAAAT
TTTTTGTTTGATGTTTAAAACTTTCGTTTAAATTCAATAAAAGTTATTTG
CAACACTTGATAAGATTATAAATAAGATATCAGATAAACGTGGACAATTA
TATTTATGCTTTTAACTTTAGTTCGGGGTCGAGGTCGGGGACGCGGAGGT
CGCCATTCATCGCATCGCTGTCCCATCTGCTTATTGTTGTTTCCAAGCCG
AATGACCATGATCGAACACAAGAGAAAACATACCAAAGTACACAAATGTA
AAATTTGCAATGAAGGTAATATCTTATTTCCTTTTTCGTTTGTCACAGCA
ATTTTGCATCGTAATCGTGGACACCGTGGCAATCGTATTACTCTCCGTCA
ATATGATAGAAATAGAACTGGTTGTTGAAAAGGTCTTGTGTCGCCCTCAC
TAGCTCACGCTACACTTTGACGTCGATCAAGATTTTACAGTATTGCTCTT
TAAAATTATTTAAACATTTAGTTTAGGGTTAGAGAAATCGGTTCTAATAC
TCCGAAACATTCGGAAGCTTTGGTACTCTCATTCGTCTTGTAGTCACGCC
TTAAACATTTTGAATAAACGACGTTTAGCTTCAGGGGGGGGGGGTCAGGA
TCCAGATACCAAACCCAGGGCCGGGGGTGGTGTCAATTTTTTTTTCAAAT
TTCAAAAAGTCAAGTTGGTATCGATTCCAAAATGAGGGGGTGGGTCCCCC
TTTTTTTGAAAATAAGGGAATTTTTAAGTTGGTATCGACACCAAAATGAG
GGGGTGGGTCCCCCTTTTTTTAATTTTTGCTGAATTTGAAATCGGTATCT
GACTTAAAATGCTGTATAATGTAAGTATAAAAACTTATTTGAATCATTCT
TCATTCTATAATTGAAATTAAATTAAATTGAAATTAAATTTTTATTTAAC
TTTTGCTGCTCTCAATTCTTTCAATCAACCAAAATTCATTCAAAACTAGA
GTTGAACAAAGTGAATCAAGTCTTAACAGATCTTTTTTCTGTATCTAACG
TTAATCATACATAGGCTATGTTACAAAGACTCTAGGTGTGCCTAATACAA
TAAGTTTTTTATCTAGTCTAGTTTATCAACTAATTTTATGAATTTGATAC
ATTTTGCCAATATAGTTCAAGAAACTTAATTTACGTTGTATCAGAATGAG
AAAAACTTGTTTTAATTTTCAGGAGTCTAAAGTGTGGTACATAGTATAAT
TAAGTGATTAATCAGGATTAATAAGAGGAATATTCTTTGAATAAAAACAT
TCACAGATTTGTTTAGCATCCCTTGTATGCAGTATCCTATGCATATAACT
TCTTGCATTTTTACTGATTGCCAATTTAGGGGGGTGGGTCCCCCTTTTTC
AGAAAAATCAGGATTTTCAAGTTCGTATCGATACCAATTTAGGGGGGTGG
GTCCCCGCTTTTTTAGAAAATTGGGGTTTTCAAGTTGGTATTGATACCAA
TTTAGGGGGTGGTGGTGTCTACTACTTTTAAATCTCGAAAAGTCAGGTTT
TTGGGCCCTGGGTTGGTATCCTGGACCCTGACCCCCCTGTTAGCTTACAT
CTGTATATAGTAGTGGACTCGTGATCAGTAACTATGTTTTATTTTCTTAC
AGGTTTTTACACGGAAGACCGTCTAGAGAAACATGCAACCAAAGAAACAC
ACAGTCACCCTTGTGACCAGTGCGAGCGGTCGTACGTCAACAAACAATCG
CTCATGCGTCACAAATTATCTCACTCTGAGAAAACACACAAATGTGATCA
ATGTTCGCGCGCATTCAAAACACCGCGTGAACTCNTCTCACTCTGAGAAA
ACACACAAATGTGATCAATGTTCACGCGCATTCAAAACACCGCGCGAACT
TAAATACCACGTCGAAGGAATGCACTCTTTATCACGTGATTTCGTTTGTG
ACGTTTGCCAAAAAGGATTTTCACGGCCGGAGAAATTGAAACGCCATCTG
ATGATCCACGCCCCAGACCGCCCTGTTTACACGTGTCCATTCAAGAACCA
CGTCGGCTGCGATAAGACATTCTATAGAAAAGACAAATTGACCAGACATT
TATATTCACACTCGAAAGTCAAACCTTTCAAGTGTGACCAATGTGATAAA
TCGTTCGCCCGCACGGATAATTTGAGAGAACACATACGCTCTCACACAGG
TAAGGAGAAATACTTGAATTCATTTTGGAAGACCATGACGAATATTGCTT
TTAGAAAACTCGAATTCTCTTCCGAGGAAGACTATCGTTTTCCATATCGT
TTTAAAGAAAAAGAAAGTGATGTTTAGTTAAATTCAACCTGTACCATTAC
AGCATTGATATTCGAGACCAAGGAACTTTAATAAAACAGTAAATCTCTTT
ATTTAAGATTCTTGCTGAGACTGACTTTTTCTTGTTTTGCGGAACTTTTT
TTGAAATACTTGAATTAAAGCCATGCCACCAAAGTTCAACTTTTTCAATC
TCTACACAGGTGTGTTCCGTTATTATTGTACTGTGTGCGGAAAAGGACAA
CCAGGACCCAAGAAATTTCTTCAACACATGCTCAAGCAGCACAACGTAGA
GAATGCAGAAATACCACGCCCCTTTGACGATGCAGCTCCTGAACCACTCA
TTCAACAACACAAAGCTGTCATTGAAGCTGAAGCTGCCGCCCGCTTAGTC
CGTGCGGCCAATAATGTTAAGAAAGACCAAGGAAAGGTTTGACATGTTCA
ATTGTTTAAAAGTTTCGTTAGAGGTGTCTGTCGGAGTGTTATTATTTTTC
TCAAAATCTTCTACAAATGACATGAACAGGTACAAAAAATATTGAAAAAC
TTCAGAAAAGTCGAAATAATTTAATAAAATATGCCCTTTTACTTAAGGTT
GTATGCATTCAAAGTAAATAACACGATTAACTTTTCAGAGATAATTAGAT
TTCTGTCCGATTTCGAATCAGCGAGAATTGACTGGAACACAGTACGTAGA
ACCATAGAACACATAGATTTATCATTTTCTGACTGGTTTTTCTTCCACCT
CAATAGAAAGTTCGCAAGGAGAATATCGAGACGACGGAGATTCCGTTAGA
TGGAGCGGTTGCCATAGCAGCAGGGTTGAACCCGATGATCCAATCAACGC
TCATGCCCAGTCCCACGCAAAATGTGACGTCAGAACAACAACAAGCCTTT
GTAGCAGCTGCTTCAAGAGGTATGTTTTATTCTTAAAAACCAACGGTAAA
TTCAAGGTCATAGTAAACAGAGAGTATCTATGAATTTAACTATATTTTTA
TATGTCTATTCTCCTGTTTTATATAATATACCTACTTAAAGAAATTCGCT
AACCTATATACAACTTTCTACATCTCAATCTTCTTCTAAAACTTATTTTT
CTGCGAAAAACATAATATTCGCTTCAAGCATATTGATTTGAAAAGTTTCT
CGGATTAATTCCCCCAAGACGTACAAAAGCCCCATGTTCTATATTTCAAA
CAACCAGGAAAAGGCTTATGTCTATGCAATCTTTAAATGTTAAGTTATTA
TTCTTAATCCTTAGGAAACATCGAAACTCTATACACCATCAGTCACACCG
GTCAAGGTTCCGGTTCTCCGCAATTTCAAATCAGTCGGGCACAAGACACG
ATGGTACGTAACGAACAACTACTACGTGAACAATTGGCACGTGAAGGTCT
CACAACTCGAGAGGTTGCTATAACGTCTGCCGGAGCTGCAACTGGAGCTA
CAGGACGCGATTCAACGCAAACGGCAGCCGCTGACGCAACCACAACGGAA
CGTCTCCAAGAAGTCATAACAAGGCAACTGGCAGAATCGGCCGCAGCGAC
GCAACAGGGCCGTGAACTGGAAGAACCCACCATCTCTATGACGGTAGACC
AAGACGGTAACATTACAACATCAGGGCGTGGTCTTCATCTTCTATCCCAG
GGAGTCCTCCCAGGACAGCTAGCAGGACAATTACAATTCACGACGCTCTT
GAATTCTGACATTATAGCGATCGGCGAGGACGTGATACGACAGAATCGGA
ACGGTGTGCTACCAGCTATGTTTCAACAGAAATTTGGAAACTAGTTAACC
GTATTATCTTCCCCGTGGTATGATTCTTTCTTCATTGTTATTAAGTTGGC
AACTGGAAAGAACCACTGTCGGTTGGCTATGTACTTGCAGTGACTTTGCT
CGCCTAGATCTGATATAGGTCTGTGGCAGGGCTTACAATTGACACCGCAT
ATGACATTAAACTATTGTCGTTTGTGCAACTAATTGGAAATTTTAGTTTT
ATATGGATGAACTAATCGTGTTTTTTAATTCATATTTAGAGTTCACATGT
TTTCATGAGATTTATGAGAGTAATTTAAAGAGGTGAAGTGTTTCTTCATT
TTTGCCTCTTAAGAGATGGCTTCCGTACCTTCAATCCCCCAAAAAATATA
CATCATAGTTTTTAAGCAATTCTAAACTCTTTTGAAAGATCACAATCCAT
CCCACCCCACTGTCAATGTTGAGTCTGAAACTGAACCATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040587XLOC_040587Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064705-exon-scaffold_421-1575043694:147892..147966TCONS_00064705-exon-scaffold_421-1575043694:147892..147966Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1575043694:147102..147245TCONS_00064705-exon-scaffold_421-1575043694:147102..147245Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1575043694:145218..145764TCONS_00064705-exon-scaffold_421-1575043694:145218..145764Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1575043694:144681..144907TCONS_00064705-exon-scaffold_421-1575043694:144681..144907Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1575043694:144198..144360TCONS_00064705-exon-scaffold_421-1575043694:144198..144360Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1575043694:142875..143852TCONS_00064705-exon-scaffold_421-1575043694:142875..143852Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:147892..147966TCONS_00064705-exon-scaffold_421-1510915933:147892..147966Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:147102..147245TCONS_00064705-exon-scaffold_421-1510915933:147102..147245Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:145218..145764TCONS_00064705-exon-scaffold_421-1510915933:145218..145764Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:144681..144907TCONS_00064705-exon-scaffold_421-1510915933:144681..144907Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:144198..144360TCONS_00064705-exon-scaffold_421-1510915933:144198..144360Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1510915933:142875..143852TCONS_00064705-exon-scaffold_421-1510915933:142875..143852Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:147892..147966TCONS_00064705-exon-scaffold_421-1491911889:147892..147966Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:147102..147245TCONS_00064705-exon-scaffold_421-1491911889:147102..147245Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:145218..145764TCONS_00064705-exon-scaffold_421-1491911889:145218..145764Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:144681..144907TCONS_00064705-exon-scaffold_421-1491911889:144681..144907Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:144198..144360TCONS_00064705-exon-scaffold_421-1491911889:144198..144360Clytia hemisphaericaexon
TCONS_00064705-exon-scaffold_421-1491911889:142875..143852TCONS_00064705-exon-scaffold_421-1491911889:142875..143852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_421supercontigscaffold_421:142875..147966 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.109	14.1098	8.75347	7.60428	7.26907	6.31097	14.2041	16.1078	11.106	12.2757	10.525	9.86723	12.5797	14.3503	10.463	11.457	15.7939	15.5342	10.8276	9.63392	12.8549	14.7451	15.3806	15.1058	17.5736	17.4853	5.41028	6.38471	11.9827	11.9692
Blast
[Close]
BLAST of TCONS_00064705 vs. Swiss-Prot (Human)
Match: ZN341 (Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.412e-30
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:  424 KCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPEKLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFKCDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKG 804
            KC  C + F+    LK H   +HS  + + C VC+  F+R +KLKRH++IH P +  Y CPF  H GC K F R DKL  H+ SHS +K  KC  C KSF+R  +L EH R+HTG +++ C  C KG
Sbjct:  595 KCQVCKKFFRREHYLKLHAH-IHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFK-KYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKG 719

HSP 2 Score: 32.3426 bits (72), Expect = 1.412e-30
Identity = 29/113 (25.66%), Postives = 47/113 (41.59%), Query Frame = 3 
Query:  111 SSHRCPICLLLFPSRMTMIEHKRKHT--KVHKCKI--CNEGFYTEDRLEKHAT--KETHSHPCDQCERSYVNKQSLMRHKLSHS----------EKTHKCDQCSRAFKTPREL 401
            SS+ C  C   F +   +  H  +H   +V+KC +  C + F   D   +H    +E  S+ C  C + + +   L  H+ SHS             +KC +C   + TP  L
Sbjct:  443 SSYLCQFCPSKFSTYFQLKSHMTQHKNEQVYKCVVKSCAQTFPKLDTFLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDNAVYKCVKCVNKYSTPEAL 555
The following BLAST results are available for this feature:
BLAST of TCONS_00064705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3411.412e-3045.67Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 ... [more]
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