TCONS_00064518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064518
Unique NameTCONS_00064518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064518 ID=TCONS_00064518|Name=TCONS_00064518|organism=Clytia hemisphaerica|type=transcript|length=1599bp
GAAAACATCTTTGAGGCACTTTGTGAACGAAAACACTTAAATGCAGTTAT
GGTATTGAAAAACACGAACTGTCTTTCGCCTGCTTCGTTGAAAACAACGA
AATCTGTGAAATATTCTTTGAAAGCCATTGCTTACTCTCTGtTATGGGGT
ATCGGCAAATCAGGCTACCGATGCAAAGTTTGTCAAATCGTTTGTCACAA
AGATTGCAAGAATCATGTTGTGATGGAATGTCGACCTCAACGATCATTCT
CTATGAGAGaTCCAAAGAAGTCTTTAAAGAAACGAATGAACCACGATTCT
TCATGGCAAGGGTCCACAGATTCTGTGGTCAACGAATCATTGGATTCCAC
TACCATCAGTCGATTCTCCGACAGCTCTGTCGATTTCTCAGATGCGTTGA
TCATCGAACGACTGAAAGAAAGAATCACTAGACTCGAAGTCgaaaaaatt
gaaatgaagaaagaaaattcaacGTTGAAGACGAAACTGAATACAGCTGA
GAAACAAGTCGAATCTTTGCAATCACAACTAGAACAGATTCGTCCTCTCT
CCGTCAAATTCATGCTCGACCAACTAGAACGGTTGAGCACGTGTAAGGAG
ACGGATCTTTAATGTGATTGGTAGTTGAGAATCAGTCCTTTAACCTGATT
GGTTGGTTTGGAGATGCATCAGTAACGTGATTGGTTCATTGATATTCATC
CTTGAATCTGATtggatcatttgaaaaaaaaagaaggattCCGCCAAGCG
TGCCCATTTGGAGAGGCTAAATGTACTCATTTTCACATGAAGGCCGTTCT
ATAGACATTCGTCTGCCGTAACTTAAGACCTTCGTACTGAAATGTGAAAT
GGTAAACATTACTCAATAATCTCTATCAATCAAAAGAACATTTTAGAGAG
AGCTCGAAAGCTCATTAAACTAGAGTTGGACTTTAATAGATACATCTAAA
ACTGCTTTATTTTGGAGTTCACCTGGAAAAAAGACAATATTTCTTCTGCT
ACAGCACAGTTTTCCTCTGTGTTACTCCGAACTTGAATCGTTCTTCAGAA
AGCTCTTAATTTTATTCTTTATATATTAAGATGATATACACTTTATTTAT
AGTATTTATTTATTATCTTAAAAATGCCAGTTAATACcttttagaaaatt
ttataaGGTAACATAGAAAACTTTGCTTGTATATATTTAGTTTTTGCCAT
AACTTCTATGTTGAACTTACCGTCCCctgtaaaaattcaaaacgatattc
caatgaaaaaaaatagaaatatttaaagtgatattatgaaaatttttgat
ctcAATCCTCTGACATGATGAAAACATGATGACCTTTAGAAAACCATTTA
GAGATTTTTCAGCCATAAAAGTTACGAAAAAGTCACTATTTCTTTCGtat
tttgtgtgaatatttcaatttttatttgtatattttgtttctaaaaaatc
tcaTCAAATCCTTCAatattcatttcatttaaaatatTATTCGTTCGTTT
AGttattttctaaatatttgtcaaaattttatttttttgtagaaTATCGC
AAACTTATACGTCAAAAGTGAATTCAATATGAATACCATTCTTTAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_418:251945..254515-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064518 ID=TCONS_00064518|Name=TCONS_00064518|organism=Clytia hemisphaerica|type=transcript|length=2571bp|location=Sequence derived from alignment at scaffold_418:251945..254515- (Clytia hemisphaerica)
GAAAACATCTTTGAGGCACTTTGTGAACGAAAACACTTAAATGCAGTTAT
GGTATTGAAAAACACGAACTGTCTTTCGCCTGCTTCGTTGAAAACAACGA
AATCTGTGAAATATTCTTTGAAAGCCATTGCTTACTCTCTGGTAAGATCT
CTTTGCCAATTTGCCATTGAAATTATATTGATTTATGAAATATTACTTTT
TCTGAATGGAATTGTCAGAGAACTTAATCCTTGACATAATATCTGATTTT
TGACCAATTTTATTTTTTCTCATTTCAGTTATGGGGTATCGGCAAATCAG
GCTACCGATGCAAAGTTTGTCAAATCGTTTGTCACAAAGATTGCAAGAAT
CATGTTGTGATGGAATGTCGACCTCAACGATCATTCTCTATGAGAGGTTG
GTCATTTCTTTACGCTTCGACTCGATCGTCAAGGATCCCTTGATAATAAA
AAACAACCATTTTTATAGGGCATTGCCATGCTTTCAGAGCAAGGCCTAAC
ACATTTTATATCTATGTACCTTCGGCAACCGTTTGTTCCATTTATGACTG
TAGCGTAAATGTTTGGTCACGGGAAAAGATGCAGCAGATTTTTCTTACTT
TCTTTAGATAATATTACAAAATTCTCAGGGCTTGGTCCATTCCCAAGAAA
CTGTTTTTTCAAAAATAATTCTGTCATATTAGTCAATCCTGCTATACGTT
CGTTTTTCCTCTTTTTGCCAAAACCCAATCTAGTCCAACTGACAAATTTC
AATCAACCAATAGAATTATTTTTGTTTGATAAGTAAAATTAAACCTTCTT
TTTTTCTTTTGCAGATCCAAAGAAGTCTTTAAAGAAACGAATGAACCACG
ATTCTTCATGGCAAGGGTCCACAGATTCTGTGGTCAACGAATCATTGGAT
TCCACTACCATCAGTCGATTCTCCGACAGCTCTGTCGATTTCTCAGATGC
GTTGATCATCGAACGACTGAAAGAAAGAATCACTAGACTCGAAGTCGTAA
GTTAATTTTTACTTAATCTTTTTCTCATAGCAAAATTCAAAATTCTATAT
ATTATGTATATGTGAGGTCCCCATGTATGAGTTTGGTAAATTATGTTGAA
GTTAAAAAAATGTTCACTTGTTTTTTTGTGAATGGGCATCTTTTCATTGA
ATTTATGAATCCTTATCCCTAAGCTAAATCAACACTGATAATCTTAAATT
TTTGAGATTGTTTCGTATAACTTCTGATTCAAGCTTACACGCTTTAAAAT
GGAAGCCATTTTTAGAGAGTTAGTATAATTATGCTGACATTGTTTCCACA
CGGTATAGCAAGAAAGACTGCATACATAAAGCGAATCAGATTTCTTAGCT
CTGGGATCTTTTTGTGTGAATTTAAATTTAAATATAAAGCATTTAATTTT
ATTTTCTTCTTAGGAAAAAATTGAAATGAAGAAAGAAAATTCAACGTTGA
AGACGAAACTGAATACAGCTGAGAAACAAGTCGAATCTTTGCAATCACAA
CTAGAACAGATTCGTCCTCTCTCCGTCAAATTCATGCTCGACCAACTAGA
ACGGTTGAGCACGTGTAAGGAGACGGATCTTTAATGTGATTGGTAGTTGA
GAATCAGTCCTTTAACCTGATTGGTTGGTTTGGAGATGCATCAGTAACGT
GATTGGTTCATTGATATTCATCCTTGAATCTGATTGGATCATTTGAAAAA
AAAAGAAGGATTCCGCCAAGCGTGCCCATTTGGAGAGGCTAAATGTACTC
ATTTTCACATGAAGGCCGTTCTATAGACATTCGTCTGCCGTAACTTAAGA
CCTTCGTACTGAAATGTGAAATGGTAAACATTACTCAATAATCTCTATCA
ATCAAAAGAACATTTTAGAGAGAGCTCGAAAGCTCATTAAACTAGAGTTG
GACTTTAATAGATACATCTAAAACTGCTTTATTTTGGAGTTCACCTGGAA
AAAAGACAATATTTCTTCTGCTACAGCACAGTTTTCCTCTGTGTTACTCC
GAACTTGAATCGTTCTTCAGAAAGCTCTTAATTTTATTCTTTATATATTA
AGATGATATACACTTTATTTATAGTATTTATTTATTATCTTAAAAATGCC
AGTTAATACCTTTTAGAAAATTTTATAAGGTAACATAGAAAACTTTGCTT
GTATATATTTAGTTTTTGCCATAACTTCTATGTTGAACTTACCGTCCCCT
GTAAAAATTCAAAACGATATTCCAATGAAAAAAAATAGAAATATTTAAAG
TGATATTATGAAAATTTTTGATCTCAATCCTCTGACATGATGAAAACATG
ATGACCTTTAGAAAACCATTTAGAGATTTTTCAGCCATAAAAGTTACGAA
AAAGTCACTATTTCTTTCGTATTTTGTGTGAATATTTCAATTTTTATTTG
TATATTTTGTTTCTAAAAAATCTCATCAAATCCTTCAATATTCATTTCAT
TTAAAATATTATTCGTTCGTTTAGTTATTTTCTAAATATTTGTCAAAATT
TTATTTTTTTGTAGAATATCGCAAACTTATACGTCAAAAGTGAATTCAAT
ATGAATACCATTCTTTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040463XLOC_040463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064518-exon-scaffold_418-1575043694:254375..254515TCONS_00064518-exon-scaffold_418-1575043694:254375..254515Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1575043694:254120..254237TCONS_00064518-exon-scaffold_418-1575043694:254120..254237Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1575043694:253520..253701TCONS_00064518-exon-scaffold_418-1575043694:253520..253701Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1575043694:251945..253102TCONS_00064518-exon-scaffold_418-1575043694:251945..253102Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1510915933:254375..254515TCONS_00064518-exon-scaffold_418-1510915933:254375..254515Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1510915933:254120..254237TCONS_00064518-exon-scaffold_418-1510915933:254120..254237Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1510915933:253520..253701TCONS_00064518-exon-scaffold_418-1510915933:253520..253701Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1510915933:251945..253102TCONS_00064518-exon-scaffold_418-1510915933:251945..253102Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1491911889:254375..254515TCONS_00064518-exon-scaffold_418-1491911889:254375..254515Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1491911889:254120..254237TCONS_00064518-exon-scaffold_418-1491911889:254120..254237Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1491911889:253520..253701TCONS_00064518-exon-scaffold_418-1491911889:253520..253701Clytia hemisphaericaexon
TCONS_00064518-exon-scaffold_418-1491911889:251945..253102TCONS_00064518-exon-scaffold_418-1491911889:251945..253102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:251945..254515 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	27.7859	21.1996	5.0337	4.55815	0.108185	0.655032	0	0.199402	16.2115	13.5965	7.56407	7.85109	1.08648	4.77322	0	0.9111	0	0.127926	0	0.0905493	0	0	0.212982	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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