TCONS_00064371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064371
Unique NameTCONS_00064371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1045

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064371 ID=TCONS_00064371|Name=TCONS_00064371|organism=Clytia hemisphaerica|type=transcript|length=1045bp
ATTTGTATCTTTTTTTCTAATGAGTTTGAGACCCAAgtcaattaaatttt
ttcgataatttttctgtttgaaaatttctcttCCTTCTTTGCAAACAGTG
GCAAAACCAGTAGGAAACAATACTTTTATTTCAGTGGATGGCacagagtt
ttttttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGA
AGATAATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACA
TTGATTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTG
ATTTTGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCA
GAAACAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGACACAGG
AAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAA
TCCAAAATCTCGCTTCTCATCTAAgCACGAAATCGATCTTGGTCCCATCA
ACCACCACTACACCTCTCCCGAAACACATCTCCGACAAACCACCATCTTG
CATGATGACGTCACAGCTCTTGAAATGCGATCCTCGACAACTGCTTGTGA
CAGGGTATCGTTCTGATGTCTTCACTTCCAGACCTTTTCTACCGGCgacg
aaaagtttgaaaacaacAACAGCGACCGCTTCTTCGTCTTACCATGGCAA
TAAGCAAACAACCCCAAAAACTCATCACAGCTTCAGGTGGAAAACCAAAC
CATCAAATACTGCACGAGTGAACAATTACCCAGACCCCATGTATAGTGCA
GACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGTTTGGAGGTGGA
AACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAAATAATAACTAA
GAACAAACTGGTTTTTGAGATATTCGAGTTTGAACTCGATgctatttttc
taaatattataaatttctagatgtatattttgtataaaagAATTTATGTt
ggtaaaaaagaatttttatgtTGGTAAAAATGCAGAACGAAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_412:90173..97778+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064371 ID=TCONS_00064371|Name=TCONS_00064371|organism=Clytia hemisphaerica|type=transcript|length=7606bp|location=Sequence derived from alignment at scaffold_412:90173..97778+ (Clytia hemisphaerica)
ATTTGTATCTTTTTTTCTAATGAGTTTGAGACCCAAgtcaattaaatttt
ttcgataatttttctgtttgaaaatttctcttCCTTCTTTGCAAACAGTG
GCAAAACCAGTAGGAAACAATACTTTTATTTCAGTGGATGGCacagagtt
ttttttttttgacaagaAGCAGTTGCGTCCTCACCCTGGCGGGTCTGAGA
AGATAATATCAATTTCCATTTCATTTCAACAGTAGAATCTAATAAACACA
TTGATTCGGACAACCTTCTTTTTGATGCATGTTCAAACCAGTGAATGTTG
ATTTTGTTGATAAAGGAGGTGCGCAGAAGCAAAGGAACCTTTATTTCTCA
GAAACAAGCAGCAAACAATCTGACGCTTTCACTGCTCACAAAGGTAACct
cttttttctctcttctcTCTTTTATGCACATAGATCGTTCCATGTGACAA
GAATTTTCGACTGAATTTATTTCGGGAAAGAAAAACCCGCTAGAAATATT
TAGCCTTGTTGATACATCATTTGTGTTTTTTTCGTTTATTTGCGATGAAA
ATAAGATTCATTCCAAACTGTATTATGCTGCGGTGTGACGAGTTATGAAA
GAAGACGCCATAAGCATGGATCTGATTTcaagaaaaagctttttttcatT
TGACACAATATTGTGAGGTTCAATGGGGGTGTGAATACTTTTGTCATAAT
CTGTCGCCATAAGCATGgatcaattaaaaagaaacaccaattaaaaagaa
acaccaattactctaaatttgagtctaaggtgGTCTTGTATGCCCCTGCG
GGCACGGTCACCATTGTTCTTTagatacaaaaaagtcaacaaacaactat
taaaaacaaacaaaaatgtgATGTGATGAATTATTGTCTCTGGGTGAGAC
ATCCTTATATACCCTGGTCGAACATTCTAATCGATGCAAAACACCTATCA
ATGGAAACTTGGAACCATCAACGTACGTACAGGACGAGAAGACCAAAAGC
TTGAACGAATTATTCGCGAAATCGATAAAGCAGATATCAGCATCTGTGCC
CTACAGGAAGTCAGACGTTTATCTCAAGGATCAGCTTNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAACACAAATATCGCATCAACTTGAAAAGTCTCAC
CCGAACACAGCGGTACCAAATAcgaaataaaaacatccaaacgtTTGGAC
AAGCGGAACTCCCATGGATTGGGTATGCGGATGATTTAGTACTTTTCTTT
ACTGACAAAGAAAGTCTTTTATCTGGTTCTGAACTTCTATAAACCaagtt
ttcgaaagttttggGCTTTTAGTTAACAAACTCAAAACCAGAAACTATGG
TTCTGAATCACAAAACTCTTGAACAACACTATCACAACACAATCATCTCA
CTCGCCGAGACACCAATCAAAAACGTCACCAACTTCACATACCTTGGGTC
GATAATTAGTCATGACGAGCCCAATACCGGAAATGCAGAAGTCAATAATC
GTATTTAAATGGCATCTGCTAAATTCAACGAAATGTCTAACCTCCTTCAA
AATCAACGAATGAACCTTTGCACCCGAATGAACTTCCTCAATAGTTTTGT
GAGAAGTCGGCTTACGTACGCGTGTCAAAACTGGAACCTAAcgaaaaatg
aatttgaaagattgaaTGTTAGTTATCGTTCTTTTCTTCGGCGAATGATA
CGTAATGGTCGAAAGTTTGTAAATCCGACTGAAAATGATTATCGTTTGAT
TATATCTAATCAACGTCTGCACGAAATTTGTCAGACATGtgacttagaat
tttttataagagaTCAACAAAAGAACTATATGTCACATGTTATTCGAATG
AACACGGAACGTTCAATCAAGCAGCTGGCTTTTAACGATGATAAATATAC
AAAGAGAGGAAGGCCTGTGAGAACTCTACTCGACCAGGTCTTAGATAACT
TAGATATTTCTATTGATGAATTTTGcactcttgcccttaagggcaAGAAT
TAGAATTTGATGGAGAGATGTGTGACTGAGAAAATAGGGACTTATCCCAG
GTTTCCTCTCCTTGCACATTTTTCCATCTCTGTTTAACCTAGGAATAGGG
ATACagtaaattttatatatatatgtCTAAATAAGAGATTTTCGAGAGAT
TGTGATGAAAGTTCATCAAATATTGaacactttttcaaacttttgatttc
aaaatgaaattgttttaatAAACGATCAGTATGAATTCTGTGTTTGTAAT
TCGAGAAAGTTGGAAAAAATTGCTTTCATTAAGTGTTTGTTGGACCTGAG
AAATATAAAGTTCTTTTTGGGAGAGATGAAGTCTAGTGTTAGTATTTGGT
CGCTGAATGAGATGAGCTGTCGAGCGTGTGGGAGTGTTCCATTGCGTGAT
CACCTCACTACACCTGTCAATCCTCGCGTTGCCAGGGGTTTCGGCAAACT
CTCCTCTTCTGGTATTACAACGCGCGTGCAATACAATGACCTTTCCAACA
TCCATATCTCGCCCTTCAAAGGTCCTATATATGACCTTATTTTAattgta
tttttcaattttaaagcaTCATGATTATCAATCAATAAGCCATGCCAACa
tatataaatttttaaaaagatcattttgatAATGGTCATGGTACAGAATC
GCAAAAATGGttatcaaattcataaaaaagcGAATCCTTGGGGACTAGGT
ACGAGGTTTAACAATCTTTCAGGTGTAGTTAACAACCAACATCCTTGTAC
AAAATCTTTCCTGTGAACTTACAGAAACATTCTTTTCTTCTAGACACAGG
AAGGAGCAGCTTTGAACGATCATCCACAACTCACTCAACACAAAATGGAA
TCCAAAATCTCGCTTCTCATCTAAggttttttttcacacaaattTTAAAC
CGTCCTCTTTCTTCGGGCGGGAAGAAGTTTTGGCCAATTCGccaattttt
gtacaatttggacgaattaagaaaaatttaagtttgGCGTCGCGATGAAT
GATTTTGTAATGACTGGGCTAATTAAGGGTGTTGTCAGGAAAAATGAAAC
CAAAGTATTAAAACCTTTCAATGCCGGCAAAAATCCTGATATCCAattta
aagctgaaaattagaattttggGATCATCCATTTTATCCCTAATGATTAA
AAATAGATTTATTGAAGACAGGTGTTTTAAAGCTCTTACATACTTTCCTT
CTTTTCAGCACGAAATCGATCTTGGTCCCATCAACCACCACTACACCTCT
CCCGAAACACATCTCCGACAAACCACCATCTTGCATGATGACGTCACAGC
TCTTGAAATGCGATCCTCGACAACTGCTTGTGACAGGGTATCGTTCTGAT
GTCTTCACTTCCAGACCTTTTCTACCGGCgacgaaaagtttgaaaacaac
AACAGCGACCGCTTCTTCGTCTTACCATGGCAATAAGCAAACAACCCCAA
AAACTCATCACAGCTTCAGGTACCTAAATTGAGTTAGATTTAATTCATAG
TTTCATACTTTCACACCTAACACTTTGATCTACTTTAATAGGATGAATTT
TCGCGgcaacttaatttcgcggatgacattATCAGGGGACAGtaattttg
tgtcttttttacTGTCAAATTATACAtatggttgttgaaatacgtattat
tagcgcttctttgatgtcaGTTAACATTTTAAAGTAGTTATCcgacattt
tttgagttttgttcaaAAACATTTCGCCGATAAGACTATtccaaatttcc
agtttttgtAAGAATAAAGGTCTAACACTGTAAAGGTCTAACATTTCTCT
GCTCTCTTTAAAGGTGGAAAACCAAACCATCAAATACTGCACGAGGTATT
TTTTATCCTTCTCAAAAGCTTTATCTGTAGTTTGGGGTTCAGTTATTCAC
TCAACACTCGGAATAAGTACTTGGCACCCTGAACTGCAATCGTCTCACCT
CCCCGGTGGGAGGAGGGGGCACTCGActcaaaattaggcctttgaaatag
aacccttacagtgcagagataatttatgtaaatttgagtaaatttgaaca
aaaaatcgAGCATTCCAGcgtatttttttgaaacctttggagcattttta
ggcaaaaatttTCAGTGATCGAAATAGCGGTGGGTTATCGGTTGAAacca
acaagaaaaaaaatcaccgacccgaaaattttcggaaaatgtGAAAATAA
CCGACCAATATTTGTGTGAGCTAAACTAATCTTGATGATCAGTTATTCAT
GGAATATCTACTTTATGACTAGTTCCTTAGTTGTAACTTTCTTCTCTTAT
TTCTTGGTTACTTCAAACTCTAttacacctccttctcacagacccggtag
gattttttcaaccagtggggataaaaataacggaccaaattcgatgggga
ttgatatttccatagtttttatggctggggatttcaattcttttgttttc
aagtcaaagaATTCAGTAGGGATGGGAAAAATAGCATAATATTTTGCAGT
GAGGATTGGTTTATTTGATTTTTTTCATTGGGGAGAGAAATTGGAAGATA
ATTTTCCACCGGGGACGATATTTAGGCCAATTTTTCCAGTGGGAAGGGTT
CCCAGTGGGTCTGTGAGAAGGGGGTGTTCTATTGACTTTCTCCTCTAATT
TCTTCGTTACTTCGAATTCTATTCCTTCGTGACTTTCTCCTCTAATTTCT
TCGTTACTTCGAGCACTATTCCTTGCTAACTTTCCAATGCTTCAGTCTTA
AaaagtttggtatcgttggGAAGGTAGGAAGGAGCTTATTACCAAACGTT
TTAAAAGTTGAAGCATTGGCTGAGAAATAAACAAGCATAGTAAAATTTAG
TGCACatttatcgtgaatagactttcaTTTCTTCGATACTTTAAACCCTA
TAAAACTTTCTTCTTTAATTACTTCTTTTTATCTGGACTTAATTTAGCTT
TTTATTACTGATGTCAgtttgttttctgttttctgttaAGTTGAGAGATT
TATATGAACTAATTGACATGAAAATAAGGCTAAGGGTTAAAACAAGTGTT
TAAAAGCCAGCAAAAAAGACAAATTTTCGAAGTGTATATTAAATAACCGA
TCAGAAGGAAAACCTTATTTCGACCACTGCAAAATATGGttggattttac
aaattttacacccttagagtgcatttttctcatctttgctcatttcgaca
CTCACATTActctttgggaagcttggaaaaggaACCCTTAAGGACCGTAA
GTACGGTCGGTTGTTTATCTTGAGTGCCCCCCTCCCCGGTCTCACCTCCC
TTGAGAAGTTGATTTCTGAAAATAACCACCCATCTTATGTTTGATTAGTT
GAGGATGTTTAAATGATTTTCATTTGTAGTGAACAATTACCCAGACCCCA
TGTATAGTGCAGACTCAGCATTTTTACAGCGTGTGACGGAAATGGCCAGT
TTGGAGGTGGAAACTGTCAAAACTGAAAAGTGGAAGAAAATGCGACGAAA
ATAATAACTAAGAACAAACTGGTTTTTGAGATATTCGAGTTTGAACTCGA
Tgctatttttctaaatattataaatttctagatgtatattttgtataaaa
gAATTTATGTtggtaaaaaagaatttttatgtTGGTAAAAATGCAGAACG
AAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040360XLOC_040360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064371-exon-scaffold_412-1491911889:90173..90565TCONS_00064371-exon-scaffold_412-1491911889:90173..90565Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1510915933:90173..90565TCONS_00064371-exon-scaffold_412-1510915933:90173..90565Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1575043694:90173..90565TCONS_00064371-exon-scaffold_412-1575043694:90173..90565Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1491911889:94916..94997TCONS_00064371-exon-scaffold_412-1491911889:94916..94997Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1510915933:94916..94997TCONS_00064371-exon-scaffold_412-1510915933:94916..94997Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1575043694:94916..94997TCONS_00064371-exon-scaffold_412-1575043694:94916..94997Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1491911889:95331..95591TCONS_00064371-exon-scaffold_412-1491911889:95331..95591Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1510915933:95331..95591TCONS_00064371-exon-scaffold_412-1510915933:95331..95591Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1575043694:95331..95591TCONS_00064371-exon-scaffold_412-1575043694:95331..95591Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1491911889:95936..95967TCONS_00064371-exon-scaffold_412-1491911889:95936..95967Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1510915933:95936..95967TCONS_00064371-exon-scaffold_412-1510915933:95936..95967Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1575043694:95936..95967TCONS_00064371-exon-scaffold_412-1575043694:95936..95967Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1491911889:97502..97778TCONS_00064371-exon-scaffold_412-1491911889:97502..97778Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1510915933:97502..97778TCONS_00064371-exon-scaffold_412-1510915933:97502..97778Clytia hemisphaericaexon
TCONS_00064371-exon-scaffold_412-1575043694:97502..97778TCONS_00064371-exon-scaffold_412-1575043694:97502..97778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:90173..97778 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4246	11.0788	1.78389	3.72053	22.2505	21.7882	42.6502	54.8399	33.0086	22.1992	13.6001	19.3063	1.10051	1.10599	3.26781	3.0208	5.43977	2.50466	0.0932383	2.01321	2.79774	1.34164	7.65182	4.30805	38.506	48.067	0	0	2.32839	4.2007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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