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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064312 ID=TCONS_00064312|Name=TCONS_00064312|organism=Clytia hemisphaerica|type=transcript|length=2233bpRun BLAST on NCBI protein sequence of TCONS_00064312-protein >TCONS_00064312-protein ID=TCONS_00064312-protein|Name=TCONS_00064312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=555bp MSLSLMPPNALVGLITFGKMVNVHELGCEGISKSYVFRGNKDITAKQLQDRun BLAST on NCBI transcript from alignment at scaffold_410:176808..183196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064312 ID=TCONS_00064312|Name=TCONS_00064312|organism=Clytia hemisphaerica|type=transcript|length=6389bp|location=Sequence derived from alignment at scaffold_410:176808..183196- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_410:176808..183196- >TCONS_00064312 ID=TCONS_00064312|Name=TCONS_00064312|organism=Clytia hemisphaerica|type=CDS|length=18348bp|location=Sequence derived from alignment at scaffold_410:176808..183196- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064312 vs. Swiss-Prot (Human)
Match: SC23A (Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2) HSP 1 Score: 806.209 bits (2081), Expect = 0.000e+0 Identity = 379/576 (65.80%), Postives = 454/576 (78.82%), Query Frame = 2
Query: 38 FPPHYAGISEQHQPAEIIPQYSTIEYTLQKQTTSPLVFLLVVDTCLDEEDLNALKESLQMSLSLMPPNALVGLITFGKMVNVHELGCEGISKSYVFRGNKDITAKQLQDMLGLGAXXXXXXXXXXXXXXPMAPQQQEVHNRFLQPVHKCDMDLTDLLGELQTDPWPVPADRRPYRSTGAALSVAVSLLECCYPNTGARILMFVGGPCTQGPGMVIDHELKNVIRSYHDIETDNTPHMKKATRHYEALATRVANNGHTVDIFACALDQVGLKEMKSCVNNTGGYMFMGDVFDSALFKQTFQRVFAKDANDEFKTAYNASFEVKTSKELKVSGCVGNCVSLERKGGNISETEIGIGGTTAWKVSALDPNTTYAIFFDVANQHTAPVPQGGRGCIQFITQYQHSSGQRRVRVTTCARNWVDS-SNLHYVAPSFDQEASAVLMARVATHRCETDDNAQDILRWLDRMLIRCVQKVGEYNKDDPNSLRLAENFSLYPQFMFHLRRSQFLQYFNNSPDETSFYRHWLNNEDVTNSLIMIQPILYSYSFHGPPEPVLLDSSSIQPDTILLLDTYFLVCIYYGE 1762
FPP YAGISE +QPAE++PQ+S+IEY + + PL+FL VVDTC+++EDL ALKES+QMSLSL+PP ALVGLITFG+MV VHELGCEGISKSYVFRG KD++AKQLQ+MLGL TQ Q QQ NRFLQPV K DM+LTDLLGELQ DPWPVP +RP RS+G ALS+AV LLEC +PNTGARI+MF+GGP TQGPGMV+ ELK IRS+HDI+ DN ++KK T+H+EALA R A GH +DI+ACALDQ GL EMK C N TGGYM MGD F+++LFKQTFQRVF KD + +FK + + E+KTS+E+K+SG +G CVSL KG +SE EIG GGT WK+ L P TT AI+F+V NQH AP+PQGGRG IQF+TQYQHSSGQRR+RVTT ARNW D+ + + +A SFDQEA+A+LMAR+A +R ET++ D+LRWLDR LIR QK GEY+KDDP+S R +E FSLYPQFMFHLRRS FLQ FNNSPDE+S+YRH +D+T SLIMIQPILY+YSF GPPEPVLLDSSSI D ILL+DT+F + IY+GE
Sbjct: 94 FPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQV------QQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGP-DVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGE 662 The following BLAST results are available for this feature:
BLAST of TCONS_00064312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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