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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064166 ID=TCONS_00064166|Name=TCONS_00064166|organism=Clytia hemisphaerica|type=transcript|length=1719bp
ACAGTATCAGACAACATCGGAATCTTTTTTCCGGAaacatatataatata
taatataatataaaataaataccTTTTTTTAGtaacacagaaaaaataaa
agattccCTTCAATAGAAAATGTCAAATGTACCAACGTTTGATCGTGGTT
CCTTCTAATTGAGCGCCATATATCATTCTCCTACAGAAGCCATCGTAATA
CTTTAGATAAATTAAACAAAATAGAATTGTGtagcaaaataaacaaaatt
cttACCACCAGCATCAAACTATGGGTGCAATCTGTTCCCACAAAACATTG
GTTTCAAAATCCTTTGTCTACATCAAGAGTATCCAAAAGTCATCCAATAT
TAAAGTTCCACTGTCAGCCAAAGAAGTTAACATCTTGAAAAAAACATGGC
CACCTGTCAAAAATAATTGGTTGAAAATATGTTTAGTGGCTTTTGAAAGG
TGGTTCACACTATACCCACAACTGCGGTATATGTTTCGCTCCCTACCCGA
AGACATACAATTCGAAGATCTTTTCAAAACAGATGCATTGAAAATGCATG
TTGATAAAGTTCGTGATGTTTTAGAATTGTTGATCAATAAGATTGATAAT
GTTGAAGAACTTGTCAACACATTAGTAGACTTTGGAAGACAACATCATAT
GTTAGGTGCTGAACAAAGATACGCAACTGCGTTGGCAGCGAGTTTCCAAT
ATGGCATTTGTATGATAATGGACGTAGATTCGTCCGTCGAGAACGCGTGG
GACAGTTTATTGCGTTTCGTCATGGATCTACTAAAGCTCGGTATGCGAAT
GGAAAAAGAAGCACAAGAAAAAGAGAGTTTAAATAAAGGCTACAACACAG
AAGAACTATTAGAAAAAGCTCAAGATGGCGGAGAAGCTTTGGATGAGAAT
GAGAATTCCGCTCCGATGCCGCTTGCTTTGATAAACGAAGATGATTCTAC
GAGTAGCGTAAGGACGTTTCATGTCGCTGAAGCGGATCCAGACGGCTGAT
AAATTAGCTCAATGCCGTTCTTGTTTCTGTTGATAAATGGTTGTTTAAGG
AGGTAAGGATGGAATGACACGTGAATGGTGTTGCAAAGAGACTGGTACGG
GTTATATCGTTGTTAATATCTGACGCACGTAAATAaagacatttgattgg
cttctttacCATCTAATATATCGATTATAGCTTACGATGTATTTTGTTTG
CAAATTGGATTcgaatttatttaaaataacTGTTTAATATAATGCCTGAT
ACTTCGTATGAAGGACGATTGTTGGAGTGAGAAAAATGCCTTGAAAAGGC
GAGAGATGATCTTAACACACCTTGAGATAGCAAGAGATAATGTCAACATT
ATTGGAAGGGACAGCTACCGGAGAGAATTTGTCAAGCATTTCCAATCAAA
AGAAACATAGCGTGTTTCACCGTTAGACTTGACATTTATTTCAAGCAATT
ATTTATGTATCCTACAAGGTTTTTACTATGATTCTCTCACAGACATCTAC
GTCAAGTGGTACCCTGCAGACTGATTTTACGTTCTCGTCTTAGCAGGAAG
AAACAAATCACAGCTTGAAGACTGTGAATAAAAAACTTCTTGAGAGACTG
CGTAGATATATTAAATTTTGTGGATTCTTTACTACTCGATTGCTgggtaa
aatataaatattgctTTATTTCGCAATTTGTAATTCTTTTCCTTTTTGTA
GGTCATGCTAACTTTTTCA Run BLAST on NCBI protein sequence of TCONS_00064166-protein >TCONS_00064166-protein ID=TCONS_00064166-protein|Name=TCONS_00064166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MGAICSHKTLVSKSFVYIKSIQKSSNIKVPLSAKEVNILKKTWPPVKNNW
LKICLVAFERWFTLYPQLRYMFRSLPEDIQFEDLFKTDALKMHVDKVRDV
LELLINKIDNVEELVNTLVDFGRQHHMLGAEQRYATALAASFQYGICMIM
DVDSSVENAWDSLLRFVMDLLKLGMRMEKEAQEKESLNKGYNTEELLEKA
QDGGEALDENENSAPMPLALINEDDSTSSVRTFHVAEADPDG Run BLAST on NCBI transcript from alignment at scaffold_41:335998..339387+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064166 ID=TCONS_00064166|Name=TCONS_00064166|organism=Clytia hemisphaerica|type=transcript|length=3390bp|location=Sequence derived from alignment at scaffold_41:335998..339387+ (Clytia hemisphaerica)
ACAGTATCAGACAACATCGGAATCTTTTTTCCGGAaacatatataatata
taatataatataaaataaataccTTTTTTTAGtaacacagaaaaaataaa
agattccCTTCAATAGAAAATGTCAAATGTACCAACGTTTGATCGTGGTT
CCTTCTAATTGAGCGCCATATATCATTCTCCTACAGAAGCCATCGTAATA
CTTTAGATAAATTAAACAAAATAGAATTGTGtagcaaaataaacaaaatt
cttACCACCAGCATCAAACTATGGGTGCAATCTGTTCCCACAAAACATTG
GTTTCAAAATCCTTTGTCTACATCAAGAGTATCCAAAAGTCATCCAATAT
TAAAGTTCCACTGTCAGCCAAAGAAGTTAACATCTTGAAAAAAACATGGC
CACCTGTCAAAAATAATTGGTTGAAAATATGTTTAGTGGCTTTTGAAAGG
TATAATTTTGTgctttataatatatttttcagacCCAGGTTTACTCACGC
TCCTCCCCTGGAATGGGAACGTTTGAGCCTTTAAGGTCTTAATTAAAGTT
TCATACCCATCTTTGGATTCTTAACAGTATCGTGGTGGCAAGTGGGCACC
GGGTGAAAACTACCCCTCCCCACAAAGAGGCCGGAAAACAAGGGGCTAAA
AAAAGGTGCCTCTGATATGTAATATCAGCGCCCCTTTGCTTTTTTACACC
TCTGAATTAGcagttttcaatcaaaaaagctCGCTTCGGTCGCGTAACTT
ACAAAGATATTTTACTTATAAAAGGGGGCGCCGAAACCCCGAATTTCCAA
AATTGCCATTCCAGTTTTGACCGACCCACTACGCTACCGATTTTAAGAGT
TTTTGATACGATGTGGAAACTAAAGAATCGATGAGCTCTTGTTGGATGAT
TCTGTTTATCATTTTACCTATCTCCTCCATTTGCTTACAcatcattttta
aacaaaagaaagatcaaTTCGCTCCCCTTTCGCCACACCCcctttctata
tcataaaaCAGGCACAACGCAACGGGTAAGGCAGGTACGGTggtcgccgt
accagattttcaccaaaaaaaacccaaaattttcctcttcgtcggtaaaa
tcgctataaaaccgcttaaatttcctcattcgccttaccagatataaaaa
gcttccgtcgtacCTGTAAAAATGAATATCTACACTACTAAACTTTCTTT
GCAGGTGGTTCACACTATACCCACAACTGCGGTATATGTTTCGCTCCCTA
CCCGAAGACATACAATTCGAAGATCTTTTCAAAACAGATGCATTGAAAAT
GCATGTTGATAAAGTTCGTGATGTTTTAGAATTGTTGATCAATAAGATTG
ATAATGTTGAAGAACTTGTCAACACATTAGTAGACTTTGGAAGACAACAT
CATATGTTAGGTGCTGAACAAAGATACGCAACTGTAAGTttttaatcttt
tgttttatttttcatcacAGTACGTAACTCAActtagcgaccgtagtgca
gtggtagagcatccggttacggtgcgcaaggttgtgggttcaaccctcaG
TCTaatcataccaaagatttccaaaaaggTAATTGATGCCTCTCTGTTTG
GTATTCagtaattaagagaaggatcaagggtaagtggagcaatccaggga
gaaagagtggtgccctcccctaccttcgggtagttagctatcgaaagagg
agccttcggatCGCCTCGGACTGCAGTCGCAGTCTTACTTACGTAACTCA
AATCGATTTTCTAgctagaaatattttttgcctTGTGCTGATTCAactga
cgctctctaattcgattttcaaggggaatcggattttcattgaataaggg
agcgtatcaaatagtagagcgtcgtttatgagagtgtctttcaatattat
cgaataatgaagtgtatcgaatagtagaacgtcgaattagagagcatcaa
ctgtagcTACAAGATCAAATTTTGTAAACTTCATTGTTCGGCAAGGTTTT
TAGTCGTTTTTGAATTATTTATACCATAAAACATTATTAGAGAAAATTTG
CTTTAGATACCGCAAAAAATTACACTTTTTATCTTAtatgtagtctagca
agctagacgactaattcagacatagtagaaacaATGAAGCAAAAAGTAAA
GGGGGGAAAATTATACAAACTAAATaccgtaacaattatcgtattatcat
ataacgcctatacttcTGTAATACACGCATTATAAATGACTCCAGTCCAT
CttaaatgaaacttttccaaaGCGTCAGAATAACGCAAAGTCGTATTTAA
AGCTCTTTAAtgattcaaatataaaagtatGTTATGAAATTTCTTTTAGG
CGTTGGCAGCGAGTTTCCAATATGGCATTTGTATGATAATGGACGTAGAT
TCGTCCGTCGAGAACGCGTGGGACAGTTTATTGCGTTTCGTCATGGATCT
ACTAAAGCTCGGTATGCGAATGGAAAAAGAAGCACAAGAAAAAGAGAGTT
TAAATAAAGGCTACAACACAGAAGAACTATTAGAAAAAGCTCAAGATGGC
GGAGAAGCTTTGGATGAGAATGAGAATTCCGCTCCGATGCCGCTTGCTTT
GATAAACGAAGATGATTCTACGAGTAGCGTAAGGACGTTTCATGTCGCTG
AAGCGGATCCAGACGGCTGATAAATTAGCTCAATGCCGTTCTTGTTTCTG
TTGATAAATGGTTGTTTAAGGAGGTAAGGATGGAATGACACGTGAATGGT
GTTGCAAAGAGACTGGTACGGGTTATATCGTTGTTAATATCTGACGCACG
TAAATAaagacatttgattggcttctttacCATCTAATATATCGATTATA
GCTTACGATGTATTTTGTTTGCAAATTGGATTcgaatttatttaaaataa
cTGTTTAATATAATGCCTGATACTTCGTATGAAGGACGATTGTTGGAGTG
AGAAAAATGCCTTGAAAAGGCGAGAGATGATCTTAACACACCTTGAGATA
GCAAGAGATAATGTCAACATTATTGGAAGGGACAGCTACCGGAGAGAATT
TGTCAAGCATTTCCAATCAAAAGAAACATAGCGTGTTTCACCGTTAGACT
TGACATTTATTTCAAGCAATTATTTATGTATCCTACAAGGTTTTTACTAT
GATTCTCTCACAGACATCTACGTCAAGTGGTACCCTGCAGACTGATTTTA
CGTTCTCGTCTTAGCAGGAAGAAACAAATCACAGCTTGAAGACTGTGAAT
AAAAAACTTCTTGAGAGACTGCGTAGATATATTAAATTTTGTGGATTCTT
TACTACTCGATTGCTgggtaaaatataaatattgctTTATTTCGCAATTT
GTAATTCTTTTCCTTTTTGTAGGTCATGCTAACTTTTTCA Coding sequence (CDS) from alignment at scaffold_41:335998..339387+ >TCONS_00064166 ID=TCONS_00064166|Name=TCONS_00064166|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at scaffold_41:335998..339387+ (Clytia hemisphaerica)
ATGGGTGCAATCTGTTCCCACAAAACATTGGTTTCAAAATCCTTTGTCTA
CATCAAGAGTATCCAAAAGTCATCCAATATTAAAGTTCCACTGTCAGCCA
AAGAAGTTAACATCTTGAAAAAAACATGGCCACCTGTCAAAAATAATTGG
TTGAAAATATGTTTAGTGGCTTTTGAAAGGTGGTTCACACTATACCCACA
ACTGCGGTATATGTTTCGCTCCCTACCCGAAGACATACAATTCGAAGATC
TTTTCAAAACAGATGCATTGAAAATGCATGTTGATAAAGTTCGTGATGTT
TTAGAATTGTTGATCAATAAGATTGATAATGTTGAAGAACTTGTCAACAC
ATTAGTAGACTTTGGAAGACAACATCATATGTTAGGTGCTGAACAAAGAT
ACGCAACTGCGTTGGCAGCGAGTTTCCAATATGGCATTTGTATGATAATG
GACGTAGATTCGTCCGTCGAGAACGCGTGGGACAGTTTATTGCGTTTCGT
CATGGATCTACTAAAGCTCGGTATGCGAATGGAAAAAGAAGCACAAGAAA
AAGAGAGTTTAAATAAAGGCTACAACACAGAAGAACTATTAGAAAAAGCT
CAAGATGGCGGAGAAGCTTTGGATGAGAATGAGAATTCCGCTCCGATGCC
GCTTGCTTTGATAAACGAAGATGATTCTACGAGTAGCGTAAGGACGTTTC
ATGTCGCTGAAGCGGATCCAGACGGCTGAATGGGTGCAATCTGTTCCCAC
AAAACATTGGTTTCAAAATCCTTTGTCTACATCAAGAGTATCCAAAAGTC
ATCCAATATTAAAGTTCCACTGTCAGCCAAAGAAGTTAACATCTTGAAAA
AAACATGGCCACCTGTCAAAAATAATTGGTTGAAAATATGTTTAGTGGCT
TTTGAAAGGTGGTTCACACTATACCCACAACTGCGGTATATGTTTCGCTC
CCTACCCGAAGACATACAATTCGAAGATCTTTTCAAAACAGATGCATTGA
AAATGCATGTTGATAAAGTTCGTGATGTTTTAGAATTGTTGATCAATAAG
ATTGATAATGTTGAAGAACTTGTCAACACATTAGTAGACTTTGGAAGACA
ACATCATATGTTAGGTGCTGAACAAAGATACGCAACTGCGTTGGCAGCGA
GTTTCCAATATGGCATTTGTATGATAATGGACGTAGATTCGTCCGTCGAG
AACGCGTGGGACAGTTTATTGCGTTTCGTCATGGATCTACTAAAGCTCGG
TATGCGAATGGAAAAAGAAGCACAAGAAAAAGAGAGTTTAAATAAAGGCT
ACAACACAGAAGAACTATTAGAAAAAGCTCAAGATGGCGGAGAAGCTTTG
GATGAGAATGAGAATTCCGCTCCGATGCCGCTTGCTTTGATAAACGAAGA
TGATTCTACGAGTAGCGTAAGGACGTTTCATGTCGCTGAAGCGGATCCAG
ACGGCTGAATGGGTGCAATCTGTTCCCACAAAACATTGGTTTCAAAATCC
TTTGTCTACATCAAGAGTATCCAAAAGTCATCCAATATTAAAGTTCCACT
GTCAGCCAAAGAAGTTAACATCTTGAAAAAAACATGGCCACCTGTCAAAA
ATAATTGGTTGAAAATATGTTTAGTGGCTTTTGAAAGGTGGTTCACACTA
TACCCACAACTGCGGTATATGTTTCGCTCCCTACCCGAAGACATACAATT
CGAAGATCTTTTCAAAACAGATGCATTGAAAATGCATGTTGATAAAGTTC
GTGATGTTTTAGAATTGTTGATCAATAAGATTGATAATGTTGAAGAACTT
GTCAACACATTAGTAGACTTTGGAAGACAACATCATATGTTAGGTGCTGA
ACAAAGATACGCAACTGCGTTGGCAGCGAGTTTCCAATATGGCATTTGTA
TGATAATGGACGTAGATTCGTCCGTCGAGAACGCGTGGGACAGTTTATTG
CGTTTCGTCATGGATCTACTAAAGCTCGGTATGCGAATGGAAAAAGAAGC
ACAAGAAAAAGAGAGTTTAAATAAAGGCTACAACACAGAAGAACTATTAG
AAAAAGCTCAAGATGGCGGAGAAGCTTTGGATGAGAATGAGAATTCCGCT
CCGATGCCGCTTGCTTTGATAAACGAAGATGATTCTACGAGTAGCGTAAG
GACGTTTCATGTCGCTGAAGCGGATCCAGACGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064166-exon-scaffold_41-1491911889:335998..336446 | TCONS_00064166-exon-scaffold_41-1491911889:335998..336446 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1510915933:335998..336446 | TCONS_00064166-exon-scaffold_41-1510915933:335998..336446 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1575043694:335998..336446 | TCONS_00064166-exon-scaffold_41-1575043694:335998..336446 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1491911889:337202..337430 | TCONS_00064166-exon-scaffold_41-1491911889:337202..337430 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1510915933:337202..337430 | TCONS_00064166-exon-scaffold_41-1510915933:337202..337430 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1575043694:337202..337430 | TCONS_00064166-exon-scaffold_41-1575043694:337202..337430 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1491911889:338347..339387 | TCONS_00064166-exon-scaffold_41-1491911889:338347..339387 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1510915933:338347..339387 | TCONS_00064166-exon-scaffold_41-1510915933:338347..339387 | Clytia hemisphaerica | exon |
| TCONS_00064166-exon-scaffold_41-1575043694:338347..339387 | TCONS_00064166-exon-scaffold_41-1575043694:338347..339387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:335998..339387 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0020037 | heme binding |
| GO:0019825 | oxygen binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0019825 |
oxygen binding |
Blast
The following BLAST results are available for this feature:
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