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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064133 ID=TCONS_00064133|Name=TCONS_00064133|organism=Clytia hemisphaerica|type=transcript|length=1416bp
cctccttctcacacaATCCTGTTTGGatttttcagtcagtggggtaaaaa
ataacggaccaaaacacGATAGGGATTGATTcccatgtttttcttttcga
cTGATGATTTGAATTCAGTTTTCGAACCTAAAAAAGTCAGCTGGGTGAAA
AAAAGCACAATGTTTTGCATGCAGTGATGAATTGTTTACCTGATCATttt
cagcggagacaaaaatttgagtataatttcccaccgggtaaatattttgg
ccaatctttCCCttgcattatcagctttttgatgcttgctaaaattaaaa
attccaaaaatgtcaTTTCATTTTAGAAATCAGCCAAGATATGACTAAAA
ACGGTCCAGCTCTTTTGATTTTATCCATCATCCTGTTACTAGGGTTACTG
GTAACACCAATCAATACTTTGAGTCTTCAAAGGGAAAAAGATGGCAAATC
AGCANTACTGGCAACACCAATCAATACTCTGAGTCTTCAAAGGGAAAAAG
ATGGTAAATCAGCTGTGAACTCAGATATTGCTTACGTACAATGTAGAAAG
AATGCAAAAGCATATTACGGACAATGTCGGACATTAATGATTCAACATGC
TGAAGGAATCACAGATTCTAACGAGCTTCAGAAGTTGTATAAAGTCATTC
CAGAGAATATGAAGTGTACATACCTTTGGATGCAAATGAAAGCAAAGTGC
CAAAAAGATAGACAAAATGCTGAAAAGAATTGATTTGTGTattaccgaaa
aaaagaagaatcaaaaatgaaattatccATACTATCAGTGTTTGTCATCA
TTGCAACTACTTTAATGATAAGAGAAAGTATTTCGAAACCATATGGCAAA
ATAAATAACCCTGGATTGGATTATGGAAATTGCATCAAAGAAgctaaaga
agaagaaaataagTGTCGTCATTCGATCAGAGAATTTGATGTGAAAAAGA
AGACACAAATGCAAGAATACCAAGGATTGATGAAGAATCATAAATGTGAA
GTGACTTATCAGCAAAGAAAATCAGTGTGTAGAGAACAACATTTTAACTA
ATTATATTAGAGGAAATGATTTATTGAACTTAATGATCCTTGGTTTGAAA
AATATACCTGTGTAGATTTCACTGATGATTGGTGCCTGAGCACCATGAAA
CTatgagtttgaaatttagatattgtgtcaactcttCATTATACCTATCT
AGATATAGCTAAAAGCAGGAACGAAGATTAAACCCTTTTCAGCAAGTGTT
TGATGAACATTCTATTTCCAATCAATTATATATATTGGGCATAGCATTTT
TACATTCGGATCATAATCCAATAGCAATTCTAAAAATCTTAGTTACATTC
CCGTTAAGGATAGGAGACTACCCTAAGGTCCCAAATAGTGGGCGTGTCTG
AATAAAAGGGGAGGAG Run BLAST on NCBI protein sequence of TCONS_00064133-protein >TCONS_00064133-protein ID=TCONS_00064133-protein|Name=TCONS_00064133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MTKNGPALLILSIILLLGLLVTPINTLSLQREKDGKSAXLATPINTLSLQ
REKDGKSAVNSDIAYVQCRKNAKAYYGQCRTLMIQHAEGITDSNELQKLY
KVIPENMKCTYLWMQMKAKCQKDRQNAEKN Run BLAST on NCBI transcript from alignment at scaffold_409:52618..56422+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064133 ID=TCONS_00064133|Name=TCONS_00064133|organism=Clytia hemisphaerica|type=transcript|length=3805bp|location=Sequence derived from alignment at scaffold_409:52618..56422+ (Clytia hemisphaerica)
cctccttctcacacaATCCTGTTTGGatttttcagtcagtggggtaaaaa
ataacggaccaaaacacGATAGGGATTGATTcccatgtttttcttttcga
cTGATGATTTGAATTCAGTTTTCGAACCTAAAAAAGTCAGCTGGGTGAAA
AAAAGCACAATGTTTTGCATGCAGTGATGAATTGTTTACCTGATCATttt
cagcggagacaaaaatttgagtataatttcccaccgggtaaatattttgg
ccaatctttCCCttgcattatcagctttttgatgcttgctaaaattaaaa
attccaaaaatgtcaTTTCATTTTAGAAATCAGCCAAGATATGACTAAAA
ACGGTCCAGCTCTTTTGATTTTATCCATCATCCTGTTACTAGGGTTACTG
GTAACACCAATCAATACTTTGAGTCTTCAAAGGGAAAAAGATGGCAAATC
AGCANTACTGGCAACACCAATCAATACTCTGAGTCTTCAAAGGGAAAAAG
ATGGTAAATCAGCTGTGAACTCAGATATTGCTTACGTACAATGTAGAAAG
AATGCAAAAGCATATTACGGACAATGTCGGACATTAATGATTCAACATGC
TGAAGGAATCACAGATTCTAACGAGCTTCAGAAGTTGTATAAAGTCATTC
CAGAGAATATGAAGTGTACATACCTTTGGATGCAAATGAAAGCAAAGTGC
CAAAAAGATAGACAAAATGCTGAAAAGAATTGATTTGTGTGTGAGCAATA
TGCTGTATGCCAGCATGATTTATTTATCATGATTTTACTTTGTGTAACTT
CCATTTTGATTAAAGTCaataaattatatatttttggatgaGGTTTAttt
ccaacattttttaatcgGATTCATATCAGTTCTTATCAAGAGATCCATTA
GACCAAAACTCGTGACATGATGAGTTTCACCTCGAATTCGAGTAAGACAG
CGTTTGAGATAACTCATCAAATATATGTGAATTAGCTATTTCAAATATCT
TATTGTGTTTTTTCGTCGCTGGCGTTATAAGGTCCAGCGTAAGGGGCTGT
AATTATGATAAACCAggctaaaaaagaaagaaatgctTTGGCGTAGTAAG
AACCAGCGCCTCGGGGggatactaggtttgcgaggtgacgggtatgtcca
agccgaaaatcgaaaatcgaccctttgagagacaaaattttggtaatttt
gggaccctttgagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttg
atgattttaacgaggcggcaacgaagctagcagtgttatcttcaaaaata
caaaggagatggatgtccagtcgtttatatgttcatggaaAGACCAATAA
TAAGTTAAAGCCTGGCTTATTTTCCAACTTATTCTTGTAGTACGTCTTCT
ACAGCCAGAAAGGTTTCTTTCCCGTTTATGTATTGCTTGCTTTGAGATAT
TATACACCtcaacatgtttttattttttttagattaccgaaaaaaagaag
aatcaaaaatgaaattatccATACTATCAGTGTTTGTCATCATTGCAACT
ACTTTAATGATAAGAGAAAGTATTTCGAAACCATATGGCAAAATAAATAA
CCCTGGATTGGATTATGGAAATTGCATCAAAGAAgctaaagaagaagaaa
ataaggTAAGGGgaaaaaacatttgattttcaTTGATTCGGGTTAGAttg
gagcgatggccaagtggtcaaagacatcagcgtctcaaaccagggattcg
tagttcgaatccccgctccttccaatgttccgttcagttcatagatcgTT
CCAGTGCAAGGTCGTGGACCTCGTGAAACAATCGagagactgtctaaaag
tcctagatacTCTATCTGTCACAAAATGTCGGGAACATTGTTACATTATT
TTTGTGGTGGAAATTGGTTTACTAAATGCAAATTTTGCTTGATTTCTTTT
CTCTGTTAAATCACTGGAAGACTCAGCAACCAAACAAAAAAAGTGGGAGA
AGTACCGTAATTTCAAAAGGGCTTAACCCTCCTCCTTTACATATAGAGAA
AAAAACGGCCCTTAGCTAGAGACTGCtgttaatttttgttgttttggtaa
TCTTTAGATAGGCTTTAGAAAGTTGAAAGCGGCAAatttatagaaaataa
aaataaaagcgCCTGCTTATGTTTGCTTAtgaattggaaatatcttgaaa
atatgcatatcatattttcaagatatttctaggattggaaatctcttatt
tcacCCATTGTGACTGCTTATTGCTTATTCTTAAATATGTTTGATATTTT
AGTGTCGTCATTCGATCAGAGAATTTGATGTGAAAAAGAAGACACAAATG
CAAGAATACCAAGGATTGATGAAGAATCATAAATGTGAAGTGACTTATCA
GCAAAGAAAATCAGTGTGTAGAGAACAACATTTTAACTAATTATATTAGA
GGAAATGATTTATTGAACTTAATGATCCTTGGTTTGAAAAATATACCTGT
GTAGATTTCACTGATGATTGGTGCCTGAGCACCATGAAACTatgagtttg
aaatttagatattgtgtcaactcttCATTATACCTATCTAGATATAGCTA
AAAGCAGGAACGAAGATTAAACCCTTTTCAGCAAGTGTTTGATGAACATT
CTATTTCCAATCAATTATATATATTGGGCATAGCATTTTTACATTCGGAT
CATAATCCAATAGCAATTCTAAAAATCTTAGTTACATTCCCGTTAAGGAT
AGGAGACTACCCTAAGGTCCCAAATAGTGGGCGTGTCTGAATAAAAGGGG
AGGAG Coding sequence (CDS) from alignment at scaffold_409:52618..56422+ >TCONS_00064133 ID=TCONS_00064133|Name=TCONS_00064133|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_409:52618..56422+ (Clytia hemisphaerica)
ATGACTAAAAACGGTCCAGCTCTTTTGATTTTATCCATCATCCTGTTACT
AGGGTTACTGGTAACACCAATCAATACTTTGAGTCTTCAAAGGGAAAAAG
ATGGCAAATCAGCANTACTGGCAACACCAATCAATACTCTGAGTCTTCAA
AGGGAAAAAGATGGTAAATCAGCTGTGAACTCAGATATTGCTTACGTACA
ATGTAGAAAGAATGCAAAAGCATATTACGGACAATGTCGGACATTAATGA
TTCAACATGCTGAAGGAATCACAGATTCTAACGAGCTTCAGAAGTTGTAT
AAAGTCATTCCAGAGAATATGAAGTGTACATACCTTTGGATGCAAATGAA
AGCAAAGTGCCAAAAAGATAGACAAAATGCTGAAAAGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064133-exon-scaffold_409-1491911889:52618..53357 | TCONS_00064133-exon-scaffold_409-1491911889:52618..53357 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1510915933:52618..53357 | TCONS_00064133-exon-scaffold_409-1510915933:52618..53357 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1575043694:52618..53357 | TCONS_00064133-exon-scaffold_409-1575043694:52618..53357 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1491911889:55100..55272 | TCONS_00064133-exon-scaffold_409-1491911889:55100..55272 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1510915933:55100..55272 | TCONS_00064133-exon-scaffold_409-1510915933:55100..55272 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1575043694:55100..55272 | TCONS_00064133-exon-scaffold_409-1575043694:55100..55272 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1491911889:55920..56422 | TCONS_00064133-exon-scaffold_409-1491911889:55920..56422 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1510915933:55920..56422 | TCONS_00064133-exon-scaffold_409-1510915933:55920..56422 | Clytia hemisphaerica | exon |
| TCONS_00064133-exon-scaffold_409-1575043694:55920..56422 | TCONS_00064133-exon-scaffold_409-1575043694:55920..56422 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:52618..56422 + |
Blast
The following BLAST results are available for this feature:
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