TCONS_00064061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064061
Unique NameTCONS_00064061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064061 ID=TCONS_00064061|Name=TCONS_00064061|organism=Clytia hemisphaerica|type=transcript|length=899bp
TGatcatgaaattttctttaagcACAACGATATGATGAGTGAACAAGACA
AAAAACGAAAAGAAGActttaagaaacatgaaatgGATAAAGAACACGAg
cgaagagaaaaacaaaaaaatatgagTGAAGAAGAACGCAAAAAGGATGA
TGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGCATGAAC
CTGGACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATGGTCTA
GATCCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACGACAAAAA
TAATGACGGACACTTGGACACCTACGAACTTGAAACAATGTTCTTAAATG
ACTTGGACAAGGTGTACAATGAATCAGACCCAAATACTGATAAACAAGAG
AGAGAAGAAGAAATGGAAAGAATGAGAGAACACGTCTTGAAAAATATGGA
CACGGATAAGGATGGATTAGTTTCATACGACGAGTTCATTGCCGAAACAA
AAGACACAGATTTCGATAAAGATGAAGAATGGAAACCTTTGACTGAAGAA
GAACAATTTAGCGATGAAGAATATAAAGAATACGAACGATTGTTATCGGA
ACAAGAAGGACATCACGAAGACGAAAATCACGTGGAAGGAGGTGCACAGG
CTGAAGTTCATCACTAGTCATTAGCCTGTCTTCATAGTCAATCTTCTTTG
TAAATTATTTCTATATTCTTGTAGGgtgtagaaaaataaatttgttcttt
tagattttgtaaaaattttatgattttatggaAGAGGGGTGCTCAATGAC
AAActcatttttctctttctttcacCAAATGACGATTGTTTCCCTTGCTG
CTTGATCTCCACAACCATAAACTGCTTATATTATATTCCCCGtgaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_407:157794..161675-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064061 ID=TCONS_00064061|Name=TCONS_00064061|organism=Clytia hemisphaerica|type=transcript|length=3882bp|location=Sequence derived from alignment at scaffold_407:157794..161675- (Clytia hemisphaerica)
TGATCATGAAATTTTCTTTAAGCACAACGATATGATGAGTGAACAAGACA
AAAAACGAAAAGAAGACTTTAAGAAACATGAAATGGATAAAGAACACGAG
CGAAGAGAAAAACAAAAAAATATGAGTGAAGAAGAACGCAAAAAGGATGA
TGAGGAATACAAACAACATCATGAACAAAAACATGAATCAATGCATGAAC
CTGTGAGGATGATTTTAAAATTATATAAAGTTTTAAATGCTTTTCAGTAT
TTCTTTGGATTCTTATAACTAGATAAGTAAATACACTACAAGCCTAAAGA
AATGGTGAAGAAAAAATCATTTATTGTTCAAATGTTTGACTTGACTAACA
TTTCAATGTTTATTCAGCTGATTTGATCATTTTTTTCTTTTTCGTTCTTT
TTCATAGGGACATAAGAAACAATTAGAAGAGGTCTGGGAAAAGGAAGATG
GTCTAGATCCTGATAGTTTCGATCCACGAACTTTCTTCAATTTACACGGT
AACGACTTTCATTTAAAAAAAACATATCTCAATTTGAAAAGATTAATTAA
AAAAGAACCTTGGAAAGAATCTTTTTAAAGCACTTTTGTCTTTTTCGTCA
ATTTCTAAGGAGGTTATATCTTGAATAGATATTTCTTGTATCAGTTTTTT
TTTCATTGAAACTTTTAAACGAGTAATGCAAAATTGTTCTTGGGATATTT
CAAAATCGGGTTGATATTATTCAATAAACAACTTATATACACGTCTCATT
TCACACAAGCATGTTCCTTATACATCTTAACTCTTCCTCCTCTTAATAAA
TCACTTCCTTATCATAAACTATCATTACCGCCATCCAATCAAGAATTATG
AAGGAAATCCCACAAAATAACTTTACGCTTTTCAACAATTAGATTATAAT
TATTTCAAATAACAACCTGCTTTCGATAATGTTGATGTAAACAAATACAG
AACATATTTTAAAAAGGTGATGAAGTAAAATCAACACAAATAACAATTCA
TTATATTAAAAAAAATATATTATTCTTTTCTGTCTTAAAGATTGTTTTCT
TAAGTTTTCCTCGATTGCATTTTCTAGACAAAAATGGTGACGGCTATTTG
GACACTTATGAATTGGAAACATTCTTTTTATCTGATGTAAGTAGGGGCCT
AAAAAATTCATTCAGAATAAACCAAACAGATTACCAGTCACCAGAGAAAG
AGTAGTTACAAGTGTAGAACAGCTACTTACCAATTTATGATGACTAATTT
AAAGAATGAAAAAAACAACTAAACTCTAATCATTAATGAATAAAATGTTA
CCCTAACCTAATATTGAAGTAATATTCAAAATATACAAAAGTTTAAAATC
TAATTCAAAATATAAAATCAAAAACTGCAATCCATCAAAAATTTAAAACT
TAAATCCGAAGAAAAATCTTTAAAAAATACTGTATCAATCTTAAAGGCAT
AACCACATGGTTTGAGATATTTGGCCTATAGATCCCTCCATGGACCTGTG
CAAAACCTAACCTTTAATCCTTTTTCCTTAACTCCTTTCCAAATTCATAT
TATGATGATTAAGTTTTTTTACTTTTATAAAGAATTGTCTAGATCTCGAT
TTAAAAAATGACAAATTTTCATACAACTTTGGAAAAGAATTAGACAAAAA
GACTCGTGAGTATGGAAGGAATCATACTGCAGGACATATCTCAAACCATC
TGATAATCACTTTCAAATTACTTAAGAAAGGCACTGTGCAACTTTGTAAA
ACAAAAAATTAATTGTCAAGATTAATTATTAATCTAATAACCTTTGAAAG
TTTTTAAAAAATCCATCACACACAACATTGCATGCACTAGGTAATCACAG
CACTCTAATTTCAGACATTTTCTTACAATGCTGGGTTGTAAATTAACACT
TGACTCATTTACTGACTTGTCTTGCTTACACAGACAAAAATAATGACGGA
CACTTGGACACCTACGAACTTGAAACAATGTTCTTAAATGACGTGAGTAA
ATCTTAATCTTAAAAATGTTTCTAATTTTAATGATATTTTATTTTTTATT
AAAAAAAGATAATAATTCTAACTTTGGAGGTGACTTATTTATAATGATCT
AAAAGTTAGTATCTAAGATTTCCAAAATAGTCTCTCTCTTGAGAATACAC
TCTTAAGCCTCGTTAACATAATGTAATGTCGTTTATATAATTGTTTATAG
TGAATAAAGATTAACTTTTGTTATGTTACTGCGCTAATCAAGTTGACTAA
AATTTTGGTCATTTCACTTTAATATGAAGTATTCGTTATTTACAAGCAGT
TTTTATTAAGATAGTCTGTAAATAACATGATTGCTTCTTCGTAGCTAATA
TTTTTTCTTCCTCGTTTTCTTTCAGTTGGACAAGGTGTACAATGAATCAG
ACCCAAATACTGATAAACAAGAGAGAGAAGAAGAAATGGAAAGAATGAGA
GAACACGTCTTGAAAAATGTAACCATTTAATTAGCCCTAAAAAGTTAATA
CATTTGAATTACTATAAATCAGTATTTCAATAAGACCTTTTTATCGAAGT
TGCGTTCTTGCAGGTCCGACTTGAGCAGACTTGTATCGTGTAGTGGATGT
TCATGTTCAAAATCTTTTCTAAAATCTTAACCCGTTCTGTCCCACAACTT
TCGCACTTTTGAAAAAAAAAATACAATTTTCAATGAGCCCAGGAAACCTT
ATGAATCTTAGCCCGTCAAAGGTGAAATATCTGGGGACCGCCCACGTGGT
CCTTTGACTGAAAGAGTCAAGTACTGATGTTGTTTTATTTTGGGATATCA
AATTATTCATGGTCTCCCAGTTTCTAGATATTACAGAGTGACTTAAATAA
AAGCAACCCTCTTGGTTTCATCTTGGTTTATTTCCATACACTAAGGAGTA
TATTATACTAATGTATTTTCTTTCCAATCGGTCAGATGGACACGGATAAG
GATGGATTAGTTTCATACGACGAGTTCATTGCCGAAACAAAAGACACAGA
TTTCGATAAAGATGAAGAATGGAAACCTTTGACTGAAGAAGAACAATTTA
GCGATGAAGAATATAAAGAATACGAACGATTGTTATCGGAACAAGAAGGA
CATGTAAGTAAAAGATCTTGACATTTTAAGTAGCGCGAGTGTTACTACTG
GTGCTCGGGGGGATTAGGTTTTATGAGGTGACGGGTATGTTGTTCGAGTC
AAAGTTTTGAGAGACTGTATTTCGAAAATTTTGCCCTCTGAGGGACTATT
TTTCCCAATTTTCAAACAATCAAAAATTTCAAATTTAATCCCAATTACGA
GAATTTATTATCGTAATTTTAGGACCTTTAAAAAGACTCCATTGCTAATT
TGCTGTTTTTGTACCCCTGTGAGAAACTTCCGAGGATTTAAAAAGGAACC
CTTATGGCTTGCACGTACCCGATACTCATTTTGCCCGAGTACCAGCCCCT
CGGTCTAGTGCTGCTGATGCCCTTAAGTTCAACCAAACAAGAGAATCTGG
TCAGTGTTCAGTTTATCGCTTAAGGCGTGGTCCATTTAAACAGTTTGTCG
CAAATCTTTTCATTCTAACCTCTTTTAATTCTTTCTTTTACTCCAGCACG
AAGACGAAAATCACGTGGAAGGAGGTGCACAGGCTGAAGTTCATCACTAG
TCATTAGCCTGTCTTCATAGTCAATCTTCTTTGTAAATTATTTCTATATT
CTTGTAGGGTGTAGAAAAATAAATTTGTTCTTTTAGATTTTGTAAAAATT
TTATGATTTTATGGAAGAGGGGTGCTCAATGACAAACTCATTTTTCTCTT
TCTTTCACCAAATGACGATTGTTTCCCTTGCTGCTTGATCTCCACAACCA
TAAACTGCTTATATTATATTCCCCGTGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040166XLOC_040166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064061-exon-scaffold_407-1575043694:161474..161675TCONS_00064061-exon-scaffold_407-1575043694:161474..161675Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1575043694:161178..161268TCONS_00064061-exon-scaffold_407-1575043694:161178..161268Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1575043694:159684..159742TCONS_00064061-exon-scaffold_407-1575043694:159684..159742Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1575043694:159208..159300TCONS_00064061-exon-scaffold_407-1575043694:159208..159300Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1575043694:158573..158740TCONS_00064061-exon-scaffold_407-1575043694:158573..158740Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1575043694:157794..158079TCONS_00064061-exon-scaffold_407-1575043694:157794..158079Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:161474..161675TCONS_00064061-exon-scaffold_407-1510915933:161474..161675Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:161178..161268TCONS_00064061-exon-scaffold_407-1510915933:161178..161268Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:159684..159742TCONS_00064061-exon-scaffold_407-1510915933:159684..159742Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:159208..159300TCONS_00064061-exon-scaffold_407-1510915933:159208..159300Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:158573..158740TCONS_00064061-exon-scaffold_407-1510915933:158573..158740Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1510915933:157794..158079TCONS_00064061-exon-scaffold_407-1510915933:157794..158079Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:161474..161675TCONS_00064061-exon-scaffold_407-1491911889:161474..161675Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:161178..161268TCONS_00064061-exon-scaffold_407-1491911889:161178..161268Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:159684..159742TCONS_00064061-exon-scaffold_407-1491911889:159684..159742Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:159208..159300TCONS_00064061-exon-scaffold_407-1491911889:159208..159300Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:158573..158740TCONS_00064061-exon-scaffold_407-1491911889:158573..158740Clytia hemisphaericaexon
TCONS_00064061-exon-scaffold_407-1491911889:157794..158079TCONS_00064061-exon-scaffold_407-1491911889:157794..158079Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:157794..161675 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
199.993	202.569	165.417	145.586	143.197	112.171	129.482	128.629	106.408	86.4887	115.888	143.559	126.907	125.703	117.722	117.014	87.3015	112.418	129.785	116.841	128.656	111.798	124.844	114.955	133.444	154.603	73.3024	73.9456	94.6492	104.487
Blast
[Close]
BLAST of TCONS_00064061 vs. Swiss-Prot (Human)
Match: NUCB2 (Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 2.703e-33
Identity = 88/189 (46.56%), Postives = 127/189 (67.20%), Query Frame = 2 
Query:   47 DKKRKEDFKKHEMDKEHERRE--KQKNMSXXXXXXXXXXXXXXXXXXXXSMHEPGHKKQLEEVWEKEDGLDPDSFDPRTFFNLHDKNNDGHLDTYELETMFLNDLDKVYNESDPNTDKQXXXXXXXXXXXHVLKNMDTDKDGLVSYDEFIAXXXXXXXXXXXXWKPLTEEEQFSDEEYKEYERLLSEQE 607
            DK R E+FKK+EM KEHERRE  K  N  + + ++   E  +   + H  ++ PG K QL+EVWE+ DGLDP+ FDP+TFF LHD N+DG LD  ELE +F  +L+KVY+  +   D  E EEE  RMREHV+  +DT+KD LV+ +EF+  T+  +F + + W+ L +++ F++EE KEYE +++ QE
Sbjct:  170 DKTRHEEFKKYEMMKEHERREYLKTLNEEKRKEEESKFEEMKKKHENHPKVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVYDPKNEEDDMVEMEEERLRMREHVMSEVDTNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELKEYENIIALQE 358
The following BLAST results are available for this feature:
BLAST of TCONS_00064061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NUCB22.703e-3346.56Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2[more]
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