|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063929 ID=TCONS_00063929|Name=TCONS_00063929|organism=Clytia hemisphaerica|type=transcript|length=792bp
TGCCTCTTCAAATCATTTGGGAATTAATTGGAGGGTGTGTTTTCGAAACT
TTTATAACGAAAATTCATCTCGTAAAATCGTATTGAGTTAAAGAGAAGAG
AAGTGTTGGGGTGTTGACACGTTGCAGTTGGTTGGACACGAGAAGTGAAA
CATCTTGCTCTCGTACAAAATGCCTGGTAAAGGAAAAGGAGCTTTGTTAC
ATCATGCCAAGAGCATGGGAAAACGTACGAGATCACAGAAAGCAGGAGTA
CAATTCCCTGTTGGAAGGATTCACAGATGTCTGAAAAAAGggCATTATGC
TAACCGTATCGGAAGTGGAGCACCCGTATATTTGGCAGCCGTTCTCGAAT
ACCTGACTGCAGAAATCCTCGAGCTGGCAGGTAACGCGGCCCGCGACAAC
AAACGAAAACGTATAATCCCTCGACATTTATCTTTGGCCATCCGAAACGA
TGAAGAATTAAATGAACTGTTAAAAGGAGTAACTATCGCTGAAGGAGGAG
TTTTACCAAATATCCAATCAAGTCTTTTACCAAAGAAAGTACAAAAAAAC
AATGACAGTCAAAGTCAAGTTTACTGAAAACGTGGATATGTTCTGTTCGA
GAGTTTGGTTTGCTTTTTTGTTGTTTCAGCGTTTATTCACAGATTGCGAT
ATTCGGTTTCTAGGTTATCATTTCTAAAGTATTTCAAATTGATAGTATTT
TTAACTGAAATTTTATACACAATATATGTAAAGTCAATTCTACATTCTTC
TCACAAAATTGAAATTCTATTTAcagtgtgtccgaaaaaaat Run BLAST on NCBI protein sequence of TCONS_00063929-protein >TCONS_00063929-protein ID=TCONS_00063929-protein|Name=TCONS_00063929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPGKGKGALLHHAKSMGKRTRSQKAGVQFPVGRIHRCLKKGHYANRIGSG
APVYLAAVLEYLTAEILELAGNAARDNKRKRIIPRHLSLAIRNDEELNEL
LKGVTIAEGGVLPNIQSSLLPKKVQKNNDSQSQVY Run BLAST on NCBI transcript from alignment at scaffold_404:278665..279907- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063929 ID=TCONS_00063929|Name=TCONS_00063929|organism=Clytia hemisphaerica|type=transcript|length=1243bp|location=Sequence derived from alignment at scaffold_404:278665..279907- (Clytia hemisphaerica)
TGCCTCTTCAAATCATTTGGGAATTAATTGGAGGGTGTGTTTTCGAAACT
TTTATAACGAAAATTCATCTCGTAAAATCGTATTGAGTTAAAGAGAAGAG
AAGTGTTGGGGTGTTGACACGTTGCAGTTGGTTGGACACGAGAAGTGAAA
CATCTTGCTCTCGTACAAAATGCCTGGTAAAGGTGATTATAATGTTTCAT
ATCTTACATTCTAAATACATATCTTTTGTGAACACTAAATTCTATCCATG
ATCTACACACTCAAAGGCTTGTGACACTTGTCTCAGTGGACAGAGTGGAT
GGGCTTTTTGGTTTTTTATTTGGATTCGTATTTGTTTTCCTTACGATGAT
CTACCATAATTTTGTAAATTAATAAACTTAGCCCTTTTTGTCCCTTTGAG
TTTATTCTTAACCCTTTAGGAAAAGGAGCTTTGTTACATCATGCCAAGAG
CATGGGAAAACGTACGAGATCACAGAAAGCAGGAGTACAATTCCCTGTTG
GAAGGATTCACAGATGTCTGAAAAAAGGTGACTGATTCCTTATCTGGGAT
TTAACCTTTGATTTTTCTAGCTCTGACTTTTAACTGAGAATCTGCGTGAT
ATTGCTGGAGTTTCTAAAATAAAATGTTAAACTTTTTGTAGTAACTTATT
TCCTAGGTTCCCAAAAAAAAATAGAGTTTATCTAAATCTAACAATAAAGA
TAATTTTCCATCCCTAAATTTTCCTAAACTTTTTTTTTCAGGGCATTATG
CTAACCGTATCGGAAGTGGAGCACCCGTATATTTGGCAGCCGTTCTCGAA
TACCTGACTGCAGAAATCCTCGAGCTGGCAGGTAACGCGGCCCGCGACAA
CAAACGAAAACGTATAATCCCTCGACATTTATCTTTGGCCATCCGAAACG
ATGAAGAATTAAATGAACTGTTAAAAGGAGTAACTATCGCTGAAGGAGGA
GTTTTACCAAATATCCAATCAAGTCTTTTACCAAAGAAAGTACAAAAAAA
CAATGACAGTCAAAGTCAAGTTTACTGAAAACGTGGATATGTTCTGTTCG
AGAGTTTGGTTTGCTTTTTTGTTGTTTCAGCGTTTATTCACAGATTGCGA
TATTCGGTTTCTAGGTTATCATTTCTAAAGTATTTCAAATTGATAGTATT
TTTAACTGAAATTTTATACACAATATATGTAAAGTCAATTCTACATTCTT
CTCACAAAATTGAAATTCTATTTACAGTGTGTCCGAAAAAAAT Coding sequence (CDS) from alignment at scaffold_404:278665..279907- >TCONS_00063929 ID=TCONS_00063929|Name=TCONS_00063929|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_404:278665..279907- (Clytia hemisphaerica)
GGCATTATGCTAACCGTATCGGAAGTGGAGCACCCGTATATTTGGCAGCC
GTTCTCGAATACCTGACTGCAGAAATCCTCGAGCTGGCAGGTAACGCGGC
CCGCGACAACAAACGAAAACGTATAATCCCTCGACATTTATCTTTGGCCA
TCCGAAACGATGAAGAATTAAATGAACTGTTAAAAGGAGTAACTATCGCT
GAAGGAGGAGTTTTACCAAATATCCAATCAAGTCTTTTACCAAAGAAAGT
ACAAAAAAACAATGACAGTCAAAGTCAAGTTTACTGAGAAAAGGAGCTTT
GTTACATCATGCCAAGAGCATGGGAAAACGTACGAGATCACAGAAAGCAG
GAGTACAATTCCCTGTTGGAAGGATTCACAGATGTCTGAAAAAAGATGCC
TGGTAAAGGGCATTATGCTAACCGTATCGGAAGTGGAGCACCCGTATATT
TGGCAGCCGTTCTCGAATACCTGACTGCAGAAATCCTCGAGCTGGCAGGT
AACGCGGCCCGCGACAACAAACGAAAACGTATAATCCCTCGACATTTATC
TTTGGCCATCCGAAACGATGAAGAATTAAATGAACTGTTAAAAGGAGTAA
CTATCGCTGAAGGAGGAGTTTTACCAAATATCCAATCAAGTCTTTTACCA
AAGAAAGTACAAAAAAACAATGACAGTCAAAGTCAAGTTTACTGAGAAAA
GGAGCTTTGTTACATCATGCCAAGAGCATGGGAAAACGTACGAGATCACA
GAAAGCAGGAGTACAATTCCCTGTTGGAAGGATTCACAGATGTCTGAAAA
AAGATGCCTGGTAAAGGGCATTATGCTAACCGTATCGGAAGTGGAGCACC
CGTATATTTGGCAGCCGTTCTCGAATACCTGACTGCAGAAATCCTCGAGC
TGGCAGGTAACGCGGCCCGCGACAACAAACGAAAACGTATAATCCCTCGA
CATTTATCTTTGGCCATCCGAAACGATGAAGAATTAAATGAACTGTTAAA
AGGAGTAACTATCGCTGAAGGAGGAGTTTTACCAAATATCCAATCAAGTC
TTTTACCAAAGAAAGTACAAAAAAACAATGACAGTCAAAGTCAAGTTTAC
TGAGAAAAGGAGCTTTGTTACATCATGCCAAGAGCATGGGAAAACGTACG
AGATCACAGAAAGCAGGAGTACAATTCCCTGTTGGAAGGATTCACAGATG
TCTGAAAAAAGATGCCTGGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063929-exon-scaffold_404-1575043694:279726..279907 | TCONS_00063929-exon-scaffold_404-1575043694:279726..279907 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1575043694:279381..279488 | TCONS_00063929-exon-scaffold_404-1575043694:279381..279488 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1575043694:278665..279166 | TCONS_00063929-exon-scaffold_404-1575043694:278665..279166 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1510915933:279726..279907 | TCONS_00063929-exon-scaffold_404-1510915933:279726..279907 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1510915933:279381..279488 | TCONS_00063929-exon-scaffold_404-1510915933:279381..279488 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1510915933:278665..279166 | TCONS_00063929-exon-scaffold_404-1510915933:278665..279166 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1491911889:279726..279907 | TCONS_00063929-exon-scaffold_404-1491911889:279726..279907 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1491911889:279381..279488 | TCONS_00063929-exon-scaffold_404-1491911889:279381..279488 | Clytia hemisphaerica | exon |
| TCONS_00063929-exon-scaffold_404-1491911889:278665..279166 | TCONS_00063929-exon-scaffold_404-1491911889:278665..279166 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:278665..279907 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0000786 | nucleosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0000786 |
nucleosome |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
BLAST of TCONS_00063929 vs. Swiss-Prot (Human)
Match: H2AX (Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 3.451e-58 Identity = 92/124 (74.19%), Postives = 106/124 (85.48%), Query Frame = 2
Query: 170 MPGKGKGALLHHAKSMGKRTRSQKAGVQFPVGRIHRCLKKGHYANRIGSGAPVYLAAVLEYLTAEILELAGNAARDNKRKRIIPRHLSLAIRNDEELNELLKGVTIAEGGVLPNIQSSLLPKKV 541
M G+GK AK+ ++RS +AG+QFPVGR+HR L+KGHYA R+G+GAPVYLAAVLEYLTAEILELAGNAARDNK+ RIIPRHL LAIRNDEELN+LL GVTIA+GGVLPNIQ+ LLPKK
Sbjct: 1 MSGRGKTGGKARAKA---KSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
|
