TCONS_00063929-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063929-protein
Unique NameTCONS_00063929-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length135

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063929-protein ID=TCONS_00063929-protein|Name=TCONS_00063929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPGKGKGALLHHAKSMGKRTRSQKAGVQFPVGRIHRCLKKGHYANRIGSG
APVYLAAVLEYLTAEILELAGNAARDNKRKRIIPRHLSLAIRNDEELNEL
LKGVTIAEGGVLPNIQSSLLPKKVQKNNDSQSQVY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040069XLOC_040069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063929TCONS_00063929Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR032454Histone_H2A_C
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 75..89
score: 71.43
coord: 17..39
score: 60.33
coord: 103..121
score: 73.03
coord: 46..61
score: 83.69
coord: 61..74
score: 90.95
IPR002119Histone H2ASMARTSM00414h2a4coord: 6..126
e-value: 2.4E-73
score: 259.7
NoneNo IPR availableGENE3D1.10.20.10coord: 3..128
e-value: 3.4E-57
score: 191.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableCDDcd00074H2Acoord: 14..123
e-value: 1.01811E-66
score: 199.098
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 18..92
e-value: 3.1E-16
score: 59.8
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 95..126
e-value: 2.7E-17
score: 62.1
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 13..128

Blast
[Close]
BLAST of TCONS_00063929-protein vs. Swiss-Prot (Human)
Match: H2AX (Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 6.123e-62
Identity = 92/124 (74.19%), Postives = 106/124 (85.48%), Query Frame = 0 
Query:    1 MPGKGKGALLHHAKSMGKRTRSQKAGVQFPVGRIHRCLKKGHYANRIGSGAPVYLAAVLEYLTAEILELAGNAARDNKRKRIIPRHLSLAIRNDEELNELLKGVTIAEGGVLPNIQSSLLPKKV 124
            M G+GK      AK+   ++RS +AG+QFPVGR+HR L+KGHYA R+G+GAPVYLAAVLEYLTAEILELAGNAARDNK+ RIIPRHL LAIRNDEELN+LL GVTIA+GGVLPNIQ+ LLPKK 
Sbjct:    1 MSGRGKTGGKARAKA---KSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of TCONS_00063929-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2AX6.123e-6274.19Histone H2AX OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
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