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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063599 ID=TCONS_00063599|Name=TCONS_00063599|organism=Clytia hemisphaerica|type=transcript|length=1620bp CTAATGTACTGCAGAAAAAGTAACCTAGCACCGATAACTAAACCTACGTA GTCAGTAGTACCTTCAACTGTTCAAAGCAAAAATGGAACAGCCAAAAAGC AAATAAATTATTCCAATTCTGCACATTTTGCTCACCGCAACTCGGATACC ATTTTAGTAAATTATATTTGCCGAAACAGCTTTTGCACTAAAatctttgt ttacaatttttttcggaaataaacttcaaaaagaaaaaaattagatattt cGGACTAATTGCCAGCCTGAAAAAATTCCGATTAATTCGATTCGTTCTCA GTCTCCTTTGTTTGAAGTGGGATTCCAATTTTCGGCGGAGCACAACTTGT GAACAgagaaatcatcaaaatttgaccaaaaagttCACCTTTTCTAACTA AAAATGAGTCGTTACAAGCTTTTTCTCGGTCATCTATCACCAGATGCAAG AACTCGTGATGTTGAAAGATTCTTTAAAGATCATGGGTTTTCTAAATCGA TTGTAGAAGTCGTTGTGAAAACTGGATATGGCTTTGTCatttttgacGAC AGAAGAGATGCAGATGATGCAATCTATGAATTAAATGGAAAGGAGTTACT TGGCGGAAGACTTCAAGTTGAATTCGCAAAGCCGTCTGGGAGATTCGAAG ACAGAGATGGCGGTGGTCGTGGACGTGGTGGAGGCTATGGTGGTAGTGGT GGTGGCGGGGGTGGGGGTTACAGATCAGATAGAGATCGAGGCGGACGCGG TGGTGGTGGCGGCGGCGGAGGTGGAGGCTATGGTCGTCCATACAACACAG AATACCGAATTATTGTTGAAAATCTATCAACTAGAGCAAGTTGGCAGGAT CTTAAAGATTACTTCAGACAAGCTGGTGAAgtaacttttgcaaaatgcca TAGAGAAAAGATGGGAGAAGGTGTTGTTGAATTCGCAAACAAGTCAGACA TGAACAACGCCATGAGAAAACTTGATGATACAGAGCTTTTTGGAAAAAGA GTAAAACTCATTTGTAATTTCTCTGGTTCACGATCACGCAGTCGTAGTCG TTCACCTCGTCGTCGCTCGTTCTCCCGCTCACCACAACGCGGTCGCTCAC GATCTCGAAGTCCACGAAGGAGCTTCTCGAGAAGTCCTCAAGCTCGACGA TCATTCTCTCGCTCAAGATCCAGATCACCTCGTTGAACTCTTTTTTAGAT ATTCTAAGATTCTTTGCATTGTCATTTAGTATAACAACACCTTTATGTTA TTACTTTTAGGGCTAGATTTTTGTGAATATTTACTTTGACCTCTCGCTAC TGATTgatgattttatcaattttatataaaaacttttagaaaaacattga aaatagtGTACACTTTATATTACCTTTTCTTCCTGTGTATCACCCAAGCT GAGGAATTCGTCATTCGTGTATTTTCCTCATTTCactcaaaataatataa tactgGTCACATTGAAATTGATTTCTCTTCTATGGTGTTAACTATTTTTG TCATCTACTTTTCAGATAAATCTTGTTTCCAGGGGTACCCAAAAAGGGTA CAAAACTTTTCAGATCGAATGCTTAATTGCTTATAAAGTGGACTTCCTAT CCTTGGGTACAGATGGGTTG Run BLAST on NCBI transcript from alignment at scaffold_394:104016..110399- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063599 ID=TCONS_00063599|Name=TCONS_00063599|organism=Clytia hemisphaerica|type=transcript|length=6384bp|location=Sequence derived from alignment at scaffold_394:104016..110399- (Clytia hemisphaerica) CTAATGTACTGCAGAAAAAGTAACCTAGCACCGATAACTAAACCTACGTA
GTCAGTAGTACCTTCAACTGTTCAAAGCAAAAATGGAACAGCCAAAAAGC
AAATAAATTATTCCAATTCTGCACATTTTGCTCACCGCAACTCGGATACC
ATTTTAGTAAATTATATTTGCCGAAACAGCTTTTGCACTAAAATCTTTGT
TTACAATTTTTTTCGGAAATAAACTTCAAAAAGAAAAAAATTAGATATTT
CGGACTAATTGCCAGCCTGAAAAAATTCCGATTAATTCGATTCGTTCTCA
GTCTCCTTTGTTTGAAGTGGGATTCCAATTTTCGGCGGAGCACAACTTGT
GAACAGAGAAATCATCAAAATTTGACCAAAAAGTTCACCTTTTCTAACTA
AAAATGAGTCGTTACAAGCTTTTTCTCGGTCATCTATCACCAGATGCAAG
AACTCGTGATGTTGAAAGATTCTTTAAAGATCATGGGTTTTCTAAATCGA
TTGTAGAAGTCGTTGTGAAAACTGGATATGGCTTTGTCGTAAGTCTTTTT
CTCTGCAAATAGATAGTTTTTTTCTTCGAAAAGGTTTGCATATTCCTAAT
CAAGTCCGACTTTTCTTGGGCATTTCACATGTTCTTCAATGGATATATTT
TTTGATGATCTAATCTTTAAATGAAAGGCTATTCCATTCTTAAACCAGGC
AAGGGCATCGGTAGACAGGACACCTGTCCTGTATTTTTATAATCTGACAT
ATACAGGACAGGTACGAGCTGTGAGGCAGATTTCTGCCTCAAAAAACTTA
CAATGGGAAATTCGAAATAGTGCTGTCCTCTTTTACTAAAATAAAAACCA
TATCATGGATCCCTAGGCTAGGGTATCGGCAACCCTTTCCAGAGGGGGGA
CTGAGCTTGGCTTTTCTAAGGGGTTTAGTCACTTATTTATTATATTCACA
GGGGATCATTGGAAGTTTGCAGGTCCTTCCAAGTGTCAACAAAGATTTAG
AGGGGCTCTTTCCTCACAAGCTGGCATAAATAGTTTCCCATAGCGGCATA
GGGTTTCACCCACAAATCTCCCACGTGCGTTTGGTTTGGGAACGCGAAAC
ACGAATGCGAACTACCCATGTCTAAACTTTTCAATATATCTCCAAAACTA
ACAGACTTTTTGAAATTCTGTAAAAAGGTCCAAGTTCCTGAATAGTTTTA
CTATGTTCTGTGAAAAAATCATAAGGCGACCGCCTGCATGCTCTTAAGCC
GCCGCTCAAAAAAGTTCATTATTTCTTAAAAACTCATTATTTTCTTCTTT
TCCTGTGCCAAGCTATCCAAAACACTCAAAGTGAATCAAAAATAACATCT
TCGCTAACAAAATGTGCGCCTCGAGTAAGAAATATGGTTCCAATCACGTC
CGCGAATGGGGTGGGGATTTTTTTAAGCAGTGGGCGGCATCAAGGGCGTT
TTAGAAATTCGCGTTTTAGACGCGTCTCGAACGCGTTTGAATTTTGCGCG
TATGTTATTTTGATTTCGAAAGTGAAAGCAGCTCGATTTCACGGTGGAAT
TCAACTTCGTTGGAGATTGGAAGCACCAGTTAGGAATAATGAATAATGAA
ATTTTGCCGCATCAAATATTTTTTGAAACGCGACGGTAAACAGAACATCA
AATTCCCATCGCCTAACCATCAGTCAAATACGCGTTCATCTATTTAAAGA
TTGAAGACAAAAATTGCGAAGAAAAATAAACCTTGAGCACAAAAAATGCT
TTTTAAACACTTTTTTCCACCGAAAAACAAATAACTTTTATAGACTTACC
TTCCCCAAACATTGAAGAAGCCTCTGCTAATCAAAGTAAATGAGATAAGA
TAAGATAAAACCTTAAAATCAACCAGAATTTACAACATTTCGTTCAAAGC
AAAAGACATGCTTTTCTCGCCGCCATCTTGTTTTAGAATGAGAATTATTT
TCGGTTCCAGTTCCCACGGTCTTTTTTTCATCCAATCAGATCGCGCGATT
TCACTTTCGCTTTCTCTAGTCCAATAAGACTGCGGGATTTGAGTCATGTG
ACATCTCTATTGAAAAACCCTCGCGGAATAAAATAGAAATACAGGGGGTC
ACACTACTGGCTACAGGAACTGAAAGCAAACAATTTTAAGGCCAATATTT
TTGGTTTTTCTGAAGGACAAAAGGTATAGGAAGCTTTACTGAAAGAGGGA
TAAGGCTGGGGCTATCTATTTAAAAGAAATGGACAAAAAAAGGCACTATT
TTGGGTGATAATTAAGATTTTACTTAGAAACTTTAATTCTCTTACCCCCG
TCTCGGGCCCCCCTGATATGAGCAGGTGAACCATGTTGGCCACCCCTACT
GAAAATTTCAGATCAAAACAAACAATGAATTAATTCCTGTAACTCGATGA
AAATTGGAAAAAGCTGGTTTTGATTGTTTCTGATCTTTTTGGTAAAAGCT
ATGCAATTTATGTTTGGATTTCTAGAAAGCCTACCCATTCATTGTCAATA
TATTTTTTATTTGAAAGTAATTTGTTGTTCAAAAGTGGATTAGCGGCAGA
TTAGATTAACTTTTCTCAACTTCAGTTGAGTTAGAATCTGAGAATGTGTG
TGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTATGTCCCAAAACTTTGGGG
CAGCCTGGAGACTTCAAAAATTGTTTGATTTGGCTGAAATTTGGCACACT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTGAATATCTGGGGGTGCTTTTTG
CATTTTTCAAAAATTTAGATTTTTGGGGCCTAGGGACGAGTTTTTTGCCA
AGACGAGGCTAAAGCTTTGAAGTAGCCTACAGCCCTCCAAAATGGTCGGA
TTTGGTTGAAATTTGGCACACTTGTTCATTGGGTAAATATCTGGGGGTCT
ACAATTGGGCCTATGAATCATTTGAAGCCACTGAAGTTGAGCCCAGTGCG
TTGCGCACGTTCGACTATTGATTATTAAATCCCGATTAGTACAGTACCAC
TGGTGTTAAAAAATTAGGCATGAATCTGGATCAATTTCCGATTAAATAAA
AAGGCAAAATTTTAATCCTGCTCTGACCCAGGATTAGCTCAGGATTTAAT
CTAATCAACTTTTGAACAACCAAGCAGAACCAAGCCAAGAGGATAATTTT
CGGTTCAAAATTTCCAGGGGTTGGTAAAAACTTTGTCAATACCCTCTGTT
TAATTTGTTTTTGGAATTAGCCCAATGAAACACAAATAAAGAATTACTAC
TAAGCGAGTTACTTTGATTTTGAGTCCATCTTGCAGTTAACAATATAAAG
TCCCTCTCCAAAAATCAAATTTCTGAAATTTTCTTTTAGATTTTTGACGA
CAGAAGAGATGCAGATGATGCAATCTATGAATTAAATGGAAAGGAGTTAC
TTGGCGGAAGGTATTATATTCAAGCAAGTTCCCCTTGGAAGCCAAAAAAG
CTCTTTTTATGCTTTTTTTTTATCATGAAAAAGGCTCATTTTACAATTAT
TCTTTAAACTTTAGAAAGGCACTGTCTGATGACCAGACCCTGAAAGTGTC
ATGAAAAGTGATTTGACAGTTTTTTCATATTTGGTACTGTTTTGGTGTAA
CTATTCATTCTCTTTCAGACTTCAAGTTGAATTCGCAAAGCCGTCTGGGA
GATTCGAAGACAGAGATGGCGGTGGTCGTGGACGTGGTGGAGGCTATGGT
GGTAGTGGTGGTGGCGGGGGTGGGGGTTACAGATCAGATAGAGATCGAGG
CGGACGCGGTGGTGGTGGCGGCGGCGGAGGTGGAGGGTGAGTTATAATTT
CATTATTGGACACACATGCCATTGTTTACAAAGATATCTTACCATTGACC
AGTTCTGGCTCTGGACAGTTTAACATTCAATGTGGTATCGCTGTCATCCA
TTTTATGATGAATTTATTCAAATACTTTCCTTTACAGCTATGGTCGTCCA
TACAACACAGAATACCGAATTATTGTTGAAAATCTATCAACTAGAGCAAG
TTGGCAGGTAAAATTTATCTGTATGATTTTTATATCAAGGATATTAATTT
TCATTGGCTTTAACTGACCACTAAAATAGAAATTGCTTTGTTCTGTTTTT
AAAAGTTTTAGCTTGAGAAATTATTAAAAAGATTTACCTTTTTTAAGAAA
TTTTAAGGTTGTTAAATTTTATACCAACTAGACATACTCCTTGCTTTCAC
TAGATTTTTGAATACTATTAATTTTAATTTTCAATCCTGGATTCCCTTTT
CTAGCATTTGTTGTTGTGCACTTAAGTGTTGTTGGCCAGTTCTAAGAATT
GGTGTAAATGAATGAATGATTTGTGTAGTGGGTGTTGCGCTTGTATGGTG
GCCAATGCCAAGTTTGTGTGCCCAAAATCTAATAAGATATGTGTTGGGTG
AAATGTGATACTTGGCTTAAGAATTTCTGATTTGGTGGCTGAAATATGTC
AATCCGGGAAGATGAAATGCTCTCTGGGTGGATTTTGGCAAAATTCAATT
AAGAATTTCTGGTGGCTATGTCTGGAATGTCCTTGTGCAATCCAGGTTTA
TACATGACATGGCTACTAAATTGGCTGGTCTTGCTCTTCTTTGCCTTGGC
TGGGTTGTTTTTGCTTTTTGTTAATTTTGAGCAGCAGAGGTACAGTAAAG
TGTCAAAGATACTTGTATTTCTCATGTTCTATAAAAAAGTTCTCATTCAA
ATAATCTTTTCAAGCAAGCCAACTCAAATCAGGTTCATTTAAGGCTTTTG
CATTATCTTTATTCTATCTATAACCGAGTGTCATAAATTTTTCACTTCAG
GATCTTAAAGATTACTTCAGACAAGCTGGTGAAGTAACTTTTGCAAAATG
CCATAGAGAAAAGATGGGAGAAGGGTAAGTGGACCGACCATAATTGGACC
TAGGACAGCCGAGGAAACCCCTAGGAAAATAAGGAATTTGGGGAGAAAAA
GTCCACTGAAGGTAATCCCATCAAGGCTATCCATTGTAAATTTTATGAAT
TTGAAACTCGCCAACCAATTTGTGGTCCAAACCTTCATTGAAGCTGATTT
TGTTTATCTATTTTCAGTGTTGTTGAATTCGCAAACAAGTCAGACATGAA
CAACGCCATGAGAAAACTTGATGATACAGAGCTTTTTGGAAAAAGAGTAA
AACTCATTTGTGTAAGTATCAATTTTCAAATTTTTTCAAAAACTATTTAA
TTGCTTGTAAAGAAAACATTCTGACAGATTCTGACGATAGTTTCACACTA
GTACTGTTTCACCTCTTACTCTAGACACTGTAACTGTAAAAACAAAAAAT
AATTCGCATTTATTTTTTTCAAACCTTAGAATTTCTCTGGTTCACGATCA
CGCAGTCGTAGTCGTTCACCTCGTCGTCGCTCGTTCTCCCGCTCACCACA
ACGCGGTCGCTCACGATCTCGAAGTCCACGAAGGAGCTTCTCGAGAAGTC
CTCAAGCTCGACGATCATTCTCTCGCTCAAGATCCAGATCACCTCGTTGA
ACTCTTTTTTAGATATTCTAAGATTCTTTGCATTGTCATTTAGTATAACA
ACACCTTTATGTTATTACTTTTAGGGCTAGATTTTTGTGAATATTTACTT
TGACCTCTCGCTACTGATTGATGATTTTATCAATTTTATATAAAAACTTT
TAGAAAAACATTGAAAATAGTGTACACTTTATATTACCTTTTCTTCCTGT
GTATCACCCAAGCTGAGGAATTCGTCATTCGTGTATTTTCCTCATTTCAC
TCAAAATAATATAATACTGGTCACATTGAAATTGATTTCTCTTCTATGGT
GTTAACTATTTTTGTCATCTACTTTTCAGATAAATCTTGTTTCCAGGGGT
ACCCAAAAAGGGTACAAAACTTTTCAGATCGAATGCTTAATTGCTTATAA
AGTGGACTTCCTATCCTTGGGTACAGATGGGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063599-exon-scaffold_394-1575043694:109862..110399 | TCONS_00063599-exon-scaffold_394-1575043694:109862..110399 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:106540..106610 | TCONS_00063599-exon-scaffold_394-1575043694:106540..106610 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:106164..106331 | TCONS_00063599-exon-scaffold_394-1575043694:106164..106331 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:105943..106012 | TCONS_00063599-exon-scaffold_394-1575043694:105943..106012 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:105076..105149 | TCONS_00063599-exon-scaffold_394-1575043694:105076..105149 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:104789..104882 | TCONS_00063599-exon-scaffold_394-1575043694:104789..104882 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1575043694:104016..104620 | TCONS_00063599-exon-scaffold_394-1575043694:104016..104620 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:109862..110399 | TCONS_00063599-exon-scaffold_394-1510915933:109862..110399 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:106540..106610 | TCONS_00063599-exon-scaffold_394-1510915933:106540..106610 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:106164..106331 | TCONS_00063599-exon-scaffold_394-1510915933:106164..106331 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:105943..106012 | TCONS_00063599-exon-scaffold_394-1510915933:105943..106012 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:105076..105149 | TCONS_00063599-exon-scaffold_394-1510915933:105076..105149 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:104789..104882 | TCONS_00063599-exon-scaffold_394-1510915933:104789..104882 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1510915933:104016..104620 | TCONS_00063599-exon-scaffold_394-1510915933:104016..104620 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:109862..110399 | TCONS_00063599-exon-scaffold_394-1491911889:109862..110399 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:106540..106610 | TCONS_00063599-exon-scaffold_394-1491911889:106540..106610 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:106164..106331 | TCONS_00063599-exon-scaffold_394-1491911889:106164..106331 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:105943..106012 | TCONS_00063599-exon-scaffold_394-1491911889:105943..106012 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:105076..105149 | TCONS_00063599-exon-scaffold_394-1491911889:105076..105149 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:104789..104882 | TCONS_00063599-exon-scaffold_394-1491911889:104789..104882 | Clytia hemisphaerica | exon |
TCONS_00063599-exon-scaffold_394-1491911889:104016..104620 | TCONS_00063599-exon-scaffold_394-1491911889:104016..104620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_394 | supercontig | scaffold_394:104016..110399 - |
Blast
BLAST of TCONS_00063599 vs. Swiss-Prot (Human)
Match: SRSF4 (Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 2.336e-36 Identity = 95/199 (47.74%), Postives = 120/199 (60.30%), Query Frame = 2
Query: 416 KLFLGHLSPDARTRDVERFFKDHGFSKSIVEVVVKTGYGFVIFXXXXXXXXXIYELNGKELLGGRLQVEFAKPSGRFEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYNTEYRIIVENLSTRASWQDLKDYFRQAGEVTFAKCHREKMGEGVVEFANKSDMNNAMRKLDDTELFGKRVKLI 1012
++++G LS AR RDVERFFK +G I+EV +K GYGFV FDD RDADDA+YELNGK+L G R+ VE A+ R S G G YG P TEYR+IVENLS+R SWQDLKDY RQAGEVT+A H+ + EGV+EF + SDM A+ KLD TE+ G++++L+
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYG---KILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRR-------------------------DGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLV 173
The following BLAST results are available for this feature:
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