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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063575 ID=TCONS_00063575|Name=TCONS_00063575|organism=Clytia hemisphaerica|type=transcript|length=3046bpRun BLAST on NCBI protein sequence of TCONS_00063575-protein >TCONS_00063575-protein ID=TCONS_00063575-protein|Name=TCONS_00063575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp MSGSRKMVYSESSENLTDDVSKKFRRRSLVMRDFNRKLKKIKRQVGSFDGRun BLAST on NCBI transcript from alignment at scaffold_394:26164..55730+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063575 ID=TCONS_00063575|Name=TCONS_00063575|organism=Clytia hemisphaerica|type=transcript|length=29567bp|location=Sequence derived from alignment at scaffold_394:26164..55730+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_394:26164..55730+ >TCONS_00063575 ID=TCONS_00063575|Name=TCONS_00063575|organism=Clytia hemisphaerica|type=CDS|length=44442bp|location=Sequence derived from alignment at scaffold_394:26164..55730+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063575 vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2) HSP 1 Score: 342.043 bits (876), Expect = 1.341e-103 Identity = 184/450 (40.89%), Postives = 268/450 (59.56%), Query Frame = 1
Query: 355 IISKFQGSRIDDQRTDLPAGLAKQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWMEGTYHILSRDMYDRPI-FPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKM 1698
+I K QGSR+D+QR P L T+E P + EVL P+P+++LP G YW+EGT H ++ P+ PT ++ L+ + T YR++F GKEH NY D+ G ++ S+ D +E +++LR K +T I P ++ P ++ K + ED V+VDRF+PV+ P+AS I+ FDEH +SN +K GV++QK GQ SEE+ EE+PA EFL+ + +V L+DF+ +RGGLDV HGQTG S Y N++ +E+MFHVS+ +PY D+QQL RKRHIGND+V++VFQ+ENTPF P+ I S+FLH ++VVQ E + YKVSV A++ VP F P LP+P +F++ E ++FLLTK++NAE A K+EKF+ L ERTR+ LL+ + + ++ M
Sbjct: 1 MIEKMQGSRMDEQRCSFPPPL----------------KTEEDYIPYPSVHEVLGREGPFPLILLPQFGGYWIEGTNHEITSIPETEPLQSPT---TKVKLECNPTARIYRKHFLGKEHFNYYSLDAALGHLVFSLKYDVIGD---------------------QEHLRLLLRTKCRTYHDVI-PISCLTEFPNVVQMAKLVCED-VNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKLGQTSEEELFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVYCNFRNKEIMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQSM 408 The following BLAST results are available for this feature:
BLAST of TCONS_00063575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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