TCONS_00063575-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063575-protein
Unique Name	TCONS_00063575-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	822

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063575-protein ID=TCONS_00063575-protein|Name=TCONS_00063575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp
MSGSRKMVYSESSENLTDDVSKKFRRRSLVMRDFNRKLKKIKRQVGSFDG
SSSQSSKKEENDSLSDVLSPIDSHATLMQEEFLDIISKFQGSRIDDQRTD
LPAGLAKQQNLKLDSISSIMESTKEQKKKEPIQEVLACGKPYPMVVLPVE
GDYWMEGTYHILSRDMYDRPIFPTIDRSRCVLDDDQTVYNYRRNFAGKEH
TNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFK
VILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPR
ASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDC
IADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKP
NDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPN
SEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAA
VKSEKFSALAERTRSMLLQGIVTDFIAKNEKMLDDDNLSNGSDNTDTHHV
KSGSFLSTFRSAIYRSSQRSEQDNISISSSSSSLPSTLNGSHSLSLNDLN
NFDSEEHRRKDMSMSTSPRPGRKTKKDKDKHSKKDRAKSAILSILPPVSH
PISEQDFNDLASPTLLQISTKQSPTSSNSNLNEQPTSRPRTRSKFYTNQL
FDEFEEPVTLTSTNQISPRCHTMSGGETRKENGSDPSIQQPKISITATTV
TSSDEENNNANDPSPSSSSSTDTAKEEIEKLRAEIHKLKIDKMDLIRQNV
KLKEQKKSRQPKQAWSDPSTGD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039855	XLOC_039855	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063575	TCONS_00063575	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003109	GoLoco_motif
IPR000331	Rap_GAP_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0030695	GTPase regulator activity
GO:0005096	GTPase activator activity

Vocabulary: **Biological Process**
Term	Definition
GO:0051056	regulation of small GTPase mediated signal transduction

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051056	regulation of small GTPase mediated signal transduction
molecular_function	GO:0005096	GTPase activator activity
molecular_function	GO:0030695	GTPase regulator activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 771..805
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 801..822
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 221..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 669..693
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 706..778
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 570..656
IPR003109	GoLoco motif	SMART	SM00390	LGN_4	coord: 79..101 e-value: 3.4E-7 score: 39.9
IPR003109	GoLoco motif	PFAM	PF02188	GoLoco	coord: 80..101 e-value: 2.0E-8 score: 33.5
IPR003109	GoLoco motif	PROSITE	PS50877	GOLOCO	coord: 79..101 score: 10.565
IPR000331	Rap GTPase activating protein domain	PFAM	PF02145	Rap_GAP	coord: 335..514 e-value: 1.1E-63 score: 214.1
IPR000331	Rap GTPase activating protein domain	PROSITE	PS50085	RAPGAP	coord: 305..521 score: 67.861
IPR000331	Rap GTPase activating protein domain	SUPERFAMILY	111347	Rap/Ran-GAP	coord: 182..530

Blast

[Close]

BLAST of TCONS_00063575-protein vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 9.740e-112
Identity = 208/538 (38.66%), Postives = 299/538 (55.58%), Query Frame = 0

Query:   70 PIDSHATLMQEEFLDIISKFQGSRIDDQRTDLPAGLAKQQNLKLDSISSIMESTKEQKKKEPIQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKML----DDDNLSNGSDNTDTHHVKSGSFLSTFRSAI-YRSSQRSEQDNISISSSSSSLPSTLNGSHS 593
            P+ +  T+   EF +++ K QG ++++Q+         Q+N K D I               I EV+  G PYP V+LP  G YW+E     GT   L   + +      + P     +  L+       YRR+F GK+H N+    S  G +++SV  + ++ +                     E  +VILR K KT+ + I P    S  P   +I K   +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK  Q  EE+   N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG  S YT +++RE+MFHVS+ +P+   D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E   YKVSV A+E VP F P LP+P +F++  E ++FLLTK+ NAENA  KS+KF+ L +RTR+ LL  +  +  A  + ML    ++D   NG           G FL +F+ AI  RS            S S  +P +L+G  S
Sbjct:   47 PLTAPPTMKSSEFFEMLEKMQGIKLEEQKP------GPQKN-KDDYIP-----------YPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGGH---------GGFLESFKRAIRVRSHSMETMVGGQKKSHSGGIPGSLSGGIS 532

The following BLAST results are available for this feature:

BLAST of TCONS_00063575-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063575-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPGP2	9.740e-112	38.66	Rap1 GTPase-activating protein 2 OS=Homo sapiens G...	[more]

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TCONS_00063575-protein (polypeptide) - C. hemisphaerica