TCONS_00063568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063568
Unique NameTCONS_00063568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063568 ID=TCONS_00063568|Name=TCONS_00063568|organism=Clytia hemisphaerica|type=transcript|length=1844bp
CTGTATTAGTATGATTTCTaaactctttgtttttcttcaaaagattgtat
ttaatatgttttttttttcagaaatgagaaacttcTTCAAGGTGTTTATG
GTATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAATG
TTGCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGTAC
AGGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAAAA
CAAAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTGCA
AATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAAGA
CGGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGGTA
GTAAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGGAC
TGGATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTTGT
ATTGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCAGA
GTATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTATTC
TCTGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCAA
CGATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAACA
TCAAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGCT
CTTGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCTG
TCATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGACG
GACATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGTTA
GCTGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACCAC
TAATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAATCA
ATTATGACATACCTATAAATCATATGCAACAACCAGACTTNattttacaa
aaaattaatttttttgtgaaaaaattctttgttaaaaaaaatatttttgt
tataaatggacgaaaaaaattttttctcagacccaactttgaaattatgc
tttccctaattatcattaaaatgttctcaacagctgttaaccaagtaaat
taaaagaaaatctagcacaaNAGCAATCAATTTTGTTGATGGGACACGCA
GCAGACGACAGGtggaagaaatttcaaaacatttcggGAAAGAGATTAAG
TTATTACAAGTTGATGATCTGGATGAGTTGGAAAAGCTGAATcaataaat
tattttcattgattGATCATTACTTTGACCCTGATGTTGCGTTGATTTGG
CTTTATAAGAATGGtttcaagataaaaacaaagataatTAAAAGACGAAA
ACAGGAAACTTCACCAAAAGATACAACTGGTCGATAATGTTCCTCAACAC
AAACTATTTTTTGTTCTCATGAGCTAACTGAAAAGCACTGTAAAATGATA
TTGAAATGAAAAGCCCAAAAGGAtttctgatttcaaaatttccactTTTT
GTATCaacttaaaaagcattttgttgTCCTCTCATTCGTGAAACGCAAGG
CTTAATAAATGATATTCCTAATGACTTTCATGTATTCGTGCAACAATCAA
GAAGTTACAATGTCttgtttttgtatttaaaatttctttaaaagttttat
ttgtaaATGATAGGTAGgctttttttgtcataaaaaagaaactttgtatA
TGAAACTCTGTCAAATGTCCAAACCAAATGAACTATCATAGcct
Run BLAST on NCBI

protein sequence of TCONS_00063568-protein

>TCONS_00063568-protein ID=TCONS_00063568-protein|Name=TCONS_00063568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MGFNKPSKIQETALPMLLADPPNNMIAQSQSGTGKTAAFVLAMLSRVDKT
KPYPQALCLSPTFELANQTGSVLEKMGKFLIEDGLKVAYALRGNRLEKGS
KCDAQIIIGTPGSLLDWIMRHRFFDPKKINIFVLDEADVMISQQGHQDQS
IRIKKALNPSAQLLLFSATYEASVMNFAQNIVNDAVIIRLRREEESLDNI
KQFYVKCDTAESKYEALANLYGSLTIGQTMVFCHTKKAVNWLSEKLSKDG
HAVALLTGELEIEQRLAVLNRFRDGKEKVLITTNVAARGIDVEQVTIVIN
YDIPINHMQQPDXILQKINFFVKKFFVKKNIFVINGRKKFFLRPNFEIML
SLIIIKMFSTAVNQVN
Run BLAST on NCBI

transcript from alignment at scaffold_394:5488..8712+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063568 ID=TCONS_00063568|Name=TCONS_00063568|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at scaffold_394:5488..8712+ (Clytia hemisphaerica)
CTGTATTAGTATGATTTCTaaactctttgtttttcttcaaaagattgtat
ttaatatgttttttttttcagaaatgagaaacttcTTCAAGGTGTTTATG
GTATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAATG
TTGCTCGCTGATCCgtatgaatttcttttcttttatgttCATCTGTTCTT
TAAATAGACATGTGCTCTTGATGCCATTTTGACTCAAATATAAGTTTTTT
GAATACCTTGAAAGTGGTAGATTCTGTAGACACCCTTGTGACTTTTGGTT
GATCATACTTTTAAGGCTATTTTGGACCTGCCATCTCTTCAAAATTCCAT
TAGGGGTACTTTTTCAACTTGGTTGCAAGCCATGACCGACAATCCCGAGA
AATTCTTCCagtgttttgttagaagcaagCCAGTTGCCCTTGTCCCATGC
ATCTGCCATAAGAAGTGGTACATGTCCTTCTATTTGTCTTAAGAAATCTA
CATTTATGATATGCGGCTATACTTCTTAGTAAACTCTATTTTGCTCAAAA
TACTATCTagtatctttttcattttagacCAAATAATATGATTGCACAGA
GTCAGAGTGGTACAGGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGT
CGTGTTGATAAAACAAAACCTTATCCACAAGCACTATGTCTCTCACCAAC
CTTCGAACTTGCAAATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAAT
TCTTGATAGAAGACGGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGA
TGTATTGCTCTTTTGATTTCTTGTTGCTTTCTAATTTTTTgtcgaaatct
aaaaaaaagaaattattttatgaATGTCTGCTTTTTAAATTTCCAGAATG
CTTgaaattgattatttttttagttttgtcttttctgaattttattattt
ctatttttcaacaatttttcagtGGAAAAGGGTAGTAAATGTGATGCACA
AATCATCATTGGTACACCTGGCTCACTGTTGGACTGGATCATGCGCCATC
GATTTTTTGACCCCAAAAAGATCAACATTTTTGTATTGGATGAAGCCGAT
GTCATGATTTCTCAACAAGGACATCAAGATCAGAGTATCAGGATAAAAAA
GTAGCAACcttttttctttaagttttCAGAGAGATTTTGGTAATTCCTTG
GCTTTTGGTCTTAatcttacattttttgcttattaaAAGCTGAAATATTG
ACAGAAACATCCACATAAGTTCATCGTTGTGGAATTTTGCAGCGTTACAA
TTCTATGCAATTTTCCACAACTTTAGCGTGGTCAAACTCAAGCTTCAATT
AGAAGCGTTGTATAGAATAGAAGCTCACCCTTGTGGAACCTTTGTGAAAT
ACTGCAATGTTGCGGAATATTGCAGCGCTGAGGAATATTGCAGTGCCTAT
GAACTTTGCAATTTGACAATCTGATATTGCTCTAATGCATGTATATTTTT
GCATCATAGGGCATTGAACCCATCAGCGCAATTGCTGCTATTCTCTGCAA
CATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCAACGATGCA
GTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAACATCAAACA
GTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGCTCTTGCCA
ATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCTGTCATGTA
AGTGAAAGTTATGTTCTTCATTTTCTTGCATGCTTTTCAATCTTGAAAAT
TCAATATAAGCAAGTTTAaaaataccttattacatgaaaattAGGAGACC
TGTAATTAAAACGAATTGAGAAATTTTGTGTTAGAAAACCCCTTTAATTA
AAACGAGCCGTGGTGTCCTTGCGAAAAGCAatggggcacgcagttactac
aagacagtatgacacttactaccgtggtggtactgtattcagaagttacg
aaaacagttactacacagtgtagtaactgctgtttgggggtggtgccaaa
cactaaaactagcacttttggtgtagtaagtgctNgatatttatttattt
taaacaatGATCAAAAAATGATTGTTTTAGACTAAAAAGGCAGTCAACTG
GTTATCGGAAAAGCTATCCAAAGACGGACATGCTGTAGCGCTGTTGACAG
GAGAGCTTGAAATTGAACAGCGGTTAGCTGTTTTGAACCGTTTCAGAGAT
GGCAAAGAGAAGGTTTTGATTACCACTAATGTGGCTGCCAGAGGTATTGA
TGTTGAGCAAGTCACCATTGTAATCAATTATGACATACCTATAAATCATA
TGCAACAACCAGACTTNattttacaaaaaattaatttttttgtgaaaaaa
ttctttgttaaaaaaaatatttttgttataaatggacgaaaaaaattttt
tctcagacccaactttgaaattatgctttccctaattatcattaaaatgt
tctcaacagctgttaaccaagtaaattaaaagaaaatctagcacaaNAGC
AATCAATTTTGTTGATGGGACACGCAGCAGACGACAGGtggaagaaattt
caaaacatttcggGAAAGAGATTAAGTTATTACAAGTTGATGATCTGGAT
GAGTTGGAAAAGCTGAATcaataaattattttcattgattGATCATTACT
TTGACCCTGATGTTGCGTTGATTTGGCTTTATAAGAATGGtttcaagata
aaaacaaagataatTAAAAGACGAAAACAGGAAACTTCACCAAAAGATAC
AACTGGTCGATAATGTTCCTCAACACAAACTATTTTTTGTTCTCATGAGC
TAACTGAAAAGCACTGTAAAATGATATTGAAATGAAAAGCCCAAAAGGAt
ttctgatttcaaaatttccactTTTTGTATCaacttaaaaagcattttgt
tgTCCTCTCATTCGTGAAACGCAAGGCTTAATNCTCATCTTCAAAAGCAT
TTTGTTGTCCTCTAGTTCGTGAAACGCAAGGCTTAATAAATGATATTCCT
AATGACTTTCATGTATTCGTGCAACAATCAAGAAGTTACAATGTCttgtt
tttgtatttaaaatttctttaaaagttttatttgtaaATGATAGGTAGgc
tttttttgtcataaaaaagaaactttgtatATGAAACTCTGTCAAATGTC
CAAACCAAATGAACTATCATAGcct

Coding sequence (CDS) from alignment at scaffold_394:5488..8712+

>TCONS_00063568 ID=TCONS_00063568|Name=TCONS_00063568|organism=Clytia hemisphaerica|type=CDS|length=5505bp|location=Sequence derived from alignment at scaffold_394:5488..8712+ (Clytia hemisphaerica)
ATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAATGTT
GCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGTACAG
GAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAAAACA
AAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTGCAAA
TCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAAGACG
GACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGGTAGT
AAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGGACTG
GATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTTGTAT
TGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCAGAGT
ATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTATTCTC
TGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCAACG
ATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAACATC
AAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGCTCT
TGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCTGTC
ATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGACGGA
CATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGTTAGC
TGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACCACTA
ATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAATCAAT
TATGACATACCTATAAATCATATGCAACAACCAGACTTNattttacaaaa
aattaatttttttgtgaaaaaattctttgttaaaaaaaatatttttgtta
taaatggacgaaaaaaattttttctcagacccaactttgaaattatgctt
tccctaattatcattaaaatgttctcaacagctgttaaccaagtaaatta
aATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAATGT
TGCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGTACA
GGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAAAAC
AAAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTGCAA
ATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAAGAC
GGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGGTAG
TAAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGGACT
GGATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTTGTA
TTGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCAGAG
TATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTATTCT
CTGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCAAC
GATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAACAT
CAAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGCTC
TTGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCTGT
CATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGACGG
ACATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGTTAG
CTGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACCACT
AATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAATCAA
TTATGACATACCTATAAATCATATGCAACAACCAGACTTNattttacaaa
aaattaatttttttgtgaaaaaattctttgttaaaaaaaatatttttgtt
ataaatggacgaaaaaaattttttctcagacccaactttgaaattatgct
ttccctaattatcattaaaatgttctcaacagctgttaaccaagtaaatt
aaATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAATG
TTGCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGTAC
AGGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAAAA
CAAAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTGCA
AATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAAGA
CGGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGGTA
GTAAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGGAC
TGGATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTTGT
ATTGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCAGA
GTATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTATTC
TCTGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCAA
CGATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAACA
TCAAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGCT
CTTGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCTG
TCATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGACG
GACATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGTTA
GCTGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACCAC
TAATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAATCA
ATTATGACATACCTATAAATCATATGCAACAACCAGACTTNattttacaa
aaaattaatttttttgtgaaaaaattctttgttaaaaaaaatatttttgt
tataaatggacgaaaaaaattttttctcagacccaactttgaaattatgc
tttccctaattatcattaaaatgttctcaacagctgttaaccaagtaaat
taaATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAAT
GTTGCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGTA
CAGGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAAA
ACAAAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTGC
AAATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAAG
ACGGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGGT
AGTAAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGGA
CTGGATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTTG
TATTGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCAG
AGTATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTATT
CTCTGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTCA
ACGATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAAC
ATCAAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGGC
TCTTGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTCT
GTCATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGAC
GGACATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGTT
AGCTGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACCA
CTAATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAATC
AATTATGACATACCTATAAATCATATGCAACAACCAGACTTNattttaca
aaaaattaatttttttgtgaaaaaattctttgttaaaaaaaatatttttg
ttataaatggacgaaaaaaattttttctcagacccaactttgaaattatg
ctttccctaattatcattaaaatgttctcaacagctgttaaccaagtaaa
ttaaATGGGTTTTAATAAGCCCTCAAAGATTCAAGAAACTGCCCTGCCAA
TGTTGCTCGCTGATCCacCAAATAATATGATTGCACAGAGTCAGAGTGGT
ACAGGAAAAACTGCAGCTTTTGTGTTGGCAATGTTGAGTCGTGTTGATAA
AACAAAACCTTATCCACAAGCACTATGTCTCTCACCAACCTTCGAACTTG
CAAATCAAACTGGCAGTGTTTTAGAAAAGATGGGCAAATTCTTGATAGAA
GACGGACTTAAAGTTGCTTATGCACTTCGAGGAAATAGATtGGAAAAGGG
TAGTAAATGTGATGCACAAATCATCATTGGTACACCTGGCTCACTGTTGG
ACTGGATCATGCGCCATCGATTTTTTGACCCCAAAAAGATCAACATTTTT
GTATTGGATGAAGCCGATGTCATGATTTCTCAACAAGGACATCAAGATCA
GAGTATCAGGATAAAAAAGGCATTGAACCCATCAGCGCAATTGCTGCTAT
TCTCTGCAACATACGAGGCTTCTGTGATGAATTTTGCTCAAAACATTGTC
AACGATGCAGTCATTATAAGGCTACGAAGGGAAGAAGAAAGTTTGGACAA
CATCAAACAGTTTTATGTGAAATGTGACACAGCTGAAAGTAAATACGAGG
CTCTTGCCAATCTGTATGGTTCTTTAACTATAGGACAGACTATGGTTTTC
TGTCATACTAAAAAGGCAGTCAACTGGTTATCGGAAAAGCTATCCAAAGA
CGGACATGCTGTAGCGCTGTTGACAGGAGAGCTTGAAATTGAACAGCGGT
TAGCTGTTTTGAACCGTTTCAGAGATGGCAAAGAGAAGGTTTTGATTACC
ACTAATGTGGCTGCCAGAGGTATTGATGTTGAGCAAGTCACCATTGTAAT
CAATTATGACATACCTATAAATCATATGCAACAACCAGACTTNattttac
aaaaaattaatttttttgtgaaaaaattctttgttaaaaaaaatattttt
gttataaatggacgaaaaaaattttttctcagacccaactttgaaattat
gctttccctaattatcattaaaatgttctcaacagctgttaaccaagtaa
attaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039854XLOC_039854Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063568-exon-scaffold_394-1491911889:5488..5651TCONS_00063568-exon-scaffold_394-1491911889:5488..5651Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:5488..5651TCONS_00063568-exon-scaffold_394-1510915933:5488..5651Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:5488..5651TCONS_00063568-exon-scaffold_394-1575043694:5488..5651Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1491911889:6065..6288TCONS_00063568-exon-scaffold_394-1491911889:6065..6288Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:6065..6288TCONS_00063568-exon-scaffold_394-1510915933:6065..6288Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:6065..6288TCONS_00063568-exon-scaffold_394-1575043694:6065..6288Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1491911889:6460..6637TCONS_00063568-exon-scaffold_394-1491911889:6460..6637Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:6460..6637TCONS_00063568-exon-scaffold_394-1510915933:6460..6637Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:6460..6637TCONS_00063568-exon-scaffold_394-1575043694:6460..6637Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1491911889:6997..7234TCONS_00063568-exon-scaffold_394-1491911889:6997..7234Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:6997..7234TCONS_00063568-exon-scaffold_394-1510915933:6997..7234Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:6997..7234TCONS_00063568-exon-scaffold_394-1575043694:6997..7234Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1491911889:7618..8462TCONS_00063568-exon-scaffold_394-1491911889:7618..8462Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:7618..8462TCONS_00063568-exon-scaffold_394-1510915933:7618..8462Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:7618..8462TCONS_00063568-exon-scaffold_394-1575043694:7618..8462Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1491911889:8518..8712TCONS_00063568-exon-scaffold_394-1491911889:8518..8712Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1510915933:8518..8712TCONS_00063568-exon-scaffold_394-1510915933:8518..8712Clytia hemisphaericaexon
TCONS_00063568-exon-scaffold_394-1575043694:8518..8712TCONS_00063568-exon-scaffold_394-1575043694:8518..8712Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063568-proteinTCONS_00063568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_394supercontigscaffold_394:5488..8712 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
109.461	110.444	72.4822	60.4394	100.437	73.7829	82.4184	88.3345	67.9616	73.4088	73.2878	67.829	72.2463	77.4238	83.5694	104.576	88.3967	82.4407	27.5073	27.0222	88.3986	84.584	98.7305	82.6626	82.5617	101.538	37.4828	30.2281	54.0678	58.6512
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00063568 vs. Swiss-Prot (Human)
Match: DD19A (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 458.759 bits (1179), Expect = 4.932e-155
Identity = 210/320 (65.62%), Postives = 266/320 (83.12%), Query Frame = 1 
Query:   79 KLLQGVYGMGFNKPSKIQETALPMLLADPPNNMIAQSQSGTGKTAAFVLAMLSRVDKTKPYPQALCLSPTFELANQTGSVLEKMGKFLIEDGLKVAYALRGNRLEKGSKCDAQIIIGTPGSLLDWIMRHRFFDPKKINIFVLDEADVMISQQGHQDQSIRIKKALNPSAQLLLFSATYEASVMNFAQNIVNDAVIIRLRREEESLDNIKQFYVKCDTAESKYEALANLYGSLTIGQTMVFCHTKKAVNWLSEKLSKDGHAVALLTGELEIEQRLAVLNRFRDGKEKVLITTNVAARGIDVEQVTIVINYDIPINHMQQPD 1038
            +LLQGVY MGFN+PSKIQE ALPM+LA+PP N+IAQSQSGTGKTAAFVLAMLSRV+ +  YPQ LCLSPT+ELA QTG V+E+MGKF  E  LK+AYA+RGN+LE+G K   QI+IGTPG++LDW  + +F DPKKI +FVLDEADVMI+ QGHQDQSIRI++ L  + Q+LLFSAT+E SV  FAQ +V D  +I+L+REEE+LD IKQ+YV C + + K++AL NLYG++TI Q M+FCHT+K  +WL+ +LSK+GH VALL+GE+ +EQR AV+ RFR+GKEKVL+TTNV ARGIDVEQV++VIN+D+P++    PD
Sbjct:  101 QLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPE--LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 418
The following BLAST results are available for this feature:
BLAST of TCONS_00063568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DD19A4.932e-15565.63ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
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