TCONS_00063447 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063447
Unique Name	TCONS_00063447
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1079

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_39:199434..204447+
coding sequence from alignment at scaffold_39:199434..204447+

transcript sequence

>TCONS_00063447 ID=TCONS_00063447|Name=TCONS_00063447|organism=Clytia hemisphaerica|type=transcript|length=1079bp
atttttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAG
GTCTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTA
ACCGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCAT
TCTGAAAGATTGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAG
TTCGCTCGTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAAT
TATTTCCGCCAATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGA
CGAATCTGACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAG
AGTGCAAGAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGT
GTTATCTTACGTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTG
GATTGGAATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATg
gagtctcaaaatttaagaGGTGGTGTCGTGGAGAGCCTTCATTAAACCCA
GACCCTTTAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACC
CCGTGGAAGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAA
CCACCATCGCACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCA
ACAAATAACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAAG
GAATCATATCTTTGCTATGATTTTCAAATGATTTGGAgacttttaaacat
ttttagccgttttttgtttcttttttataaacttGGCATGGACAGCAGTA
GCGTGGTTAGACTAGAGTATACTTTTGATTaaactttttgatgattttga
tggcgctgaatccagtgaagtagactagaggattTTGCCatcttcaattt
tttcactttcattttcaaaaattatatgaaagtttatgaaactaaaaaaa
acaagaaaatacctccaaaatttgaaaaaattggtctattggttctttgt
ttgtttttctccaaaaagggactggatct

Run BLAST on NCBI

protein sequence of TCONS_00063447-protein

>TCONS_00063447-protein ID=TCONS_00063447-protein|Name=TCONS_00063447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
FFLYSTFCRGITLAWTGLNDHKDNTIDGTFEYLTGIDGFVPLSPLPSNSI
LKDCAALQVGNENKFEVRSCGGTTKIWSICKMNYFRQSIIFVPAEVPQRD
ESDGVLTELNWSDADQECKNKGGELMNICGMNSVILRRILRKRNIDTPVW
IGMNYDTSKKKFFWRNGVSKFKRWCRGEPSLNPDPLAPNQCVAYIVGGKP
RGRGTGKGCIRVEPCGTTIAPNKKMFVCQIKESTNNDLVNDTLNEVEK

Run BLAST on NCBI

transcript from alignment at scaffold_39:199434..204447+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063447 ID=TCONS_00063447|Name=TCONS_00063447|organism=Clytia hemisphaerica|type=transcript|length=5014bp|location=Sequence derived from alignment at scaffold_39:199434..204447+ (Clytia hemisphaerica)
atttttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAG
GTCTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTA
ACCGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCAT
TCTGAAAGATTGTGCTGCACTTCAGGTATatactaaaaaacttttttttt
catttgcagTTTCTGTGAAGTCAAGCACTGTGGTGTGGGGGGCTACTCTT
GAGTACCTAATAGTCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAATTGATCGAAAAATTAATCATGGGGG
GGGGGCTGCTGGAGACCAACTTTATGCTCCCCAGGGGGGCAGTGGGtatg
acggtatgtgcggggaacagattggcttttagaatcgcacccttacagtg
aagaagaaaatcggtgaaattcatacccttacagtgcattttttcaacaa
tagagcaaaagaagcaaaatttttgagcaaaaatcggcaatttttcctag
atttgctgaaatttccacccatacagtgcatttatcaaaagtctaCCCTT
AAAATGcatttatgatattttgaaaaacatagcCTTAActgccgcacata
cccgtcagtcaatttgcctgactgcccccgaGTCATACCATATCAGTTTT
TACAGGAGTTTAAGGTCttcttacagtatatggcccccaaaacggagacg
gcccccaaaacggaggttttcattgaaatgaagattctgacttgtagatt
tatcagaatcttcatttcaatgaaaacctccgttttgggggccgtctccg
ttttgggggccatctccgttttgggggccatctccgttttgggggccatc
tccgttttgggggccatctccgttttgggggccatctccgttttgggggc
catctccgttttgggggccatctccgttttgggggccatctccgttttgg
gggccatctccgttttgggggccatctccgttttgggggccatctccgtt
ttgggggccatctccgttttgggggccatctccgttttgggggccatctc
cgttttgggggccatctccgttttgggggccatctccgttttgggggcca
tctccgttttgggggccatctccgttttgggggccatctccgttttgggg
gccatctccgttttgggggccatctccgttttgggggccatctccgtttt
gggggccatctccgttttgggggccatctccgttttgggggccatctccg
ttttgggggccatctccgttttgggggccatctccgttttgggggccatc
tccgttttgggggccatctccgttttgggggccatctccgttttgggggc
catctccgttttgggggccattagaaaaaagctacctatctttaagcgat
tgaaaaatattgttgaaattgaaaattttgaaaaagaacttccaggaaat
aaagtagagatgttaaaggttttcatgcagcaaaaatttttgtaaaatct
cttttcctctagatttgagagaaatttcaaatttgatcgccgttttgggg
gccacatataCTGTAGTCATTATAAAATACACTGATCTGGTAATCCACTG
TTTTAGCTTTTTCgtcaaattttcatttgttgTAAATAAAAAGCAAGTTG
CGATTTGGATCACATTATTATTTTCGACTCTTGGGATTGGTAAACAAATC
CATTTAAGCTCTAACCCAgcttgcacacaacgttgtttcaacgtttatct
aatgttcacaacgtccgtataacgttagatgaacgttgaaacaacgttgt
atgtCAGCTGGGAACTGCTAAAAAATAGAGATAAACgaaagccttccaga
ccggggtATTTTATAATGACAATCTGTTTAGACACGACCTGTTAATTTAA
AAGCCTAAGATTtgtaagatttttaaattggccaACAATATATTATTTAA
GTACAAGAAGATTTTTAGGTTTAGAACACCCAAAGGCCTCTTAACCTTTT
GACGTTCTCAAAGGAACTGAAATTTTTACGCTTTTTACGTTTTCAGGttg
gaaatgaaaataaattcgaAGTTCGCTCGTGTGGTGGGACAACAAAAATA
TGGTCGATTTGCAAAATGAATTATTTCCGCCAATCCATTATCTTTGTACC
AGCTGAAGTTCCACAAAGAGACGAATCTGACGGAGTATTAACCGAATTGA
ATTGGTCAGATGCGGATCAAGAGTGCAAGAACAAAGGGGGAGAATTGATG
AACATTTGTGGCATGAATAGTGTTATCTTACGTCGAATTTTACGCAAAAG
GTATCAATAGATATCGTTTGTTTTCTAAAGTTTGCAGTCTTTTTTCCTAC
CATGCAGAAACCACTCAAGGAAATTAGTCTAATAATAAGACTTCTGCTCA
TACTCTAGCGAAACGAGTTTCTTATAGGAGCTATATCTATTGAGTTACAT
TAAAAGTGAATTGGAAATACTTATCCACGCAATGTTATCCACAGTTCACA
TCATTGGTATACATCCTGGTGCAAGACAAACTTTGTCGCCTAATTTAGGA
AAAAAAACATCCCAATTCTTCGGTGTAAATACTTCAATTATCGGCTCAAG
GATATAATTGCATAATTTTTCAATATTGCTAAGAATTCAGAATACGCTGT
CTCAGTGTTACACTTCGTCGGCCTAGAAAACAAAAAGCGAAAACAACCGC
AgcaccctcagccaaagtacaaCTGTCTCTTTACAAAATGTATGAATCTC
AAACTTTTTGTACAGTTTTTCAACTTTCCCTATATTTGAATTTGCCTTGA
TTGTTATTTTTTCAGGAATATCGATACTCCAGTTTGGATTGGAATGAATT
ATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATGGAGTCTCAAAATTT
AGGAGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTTTAGCACC
TAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGAAGAGGCA
CCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCATCGCACCC
AATaagaaaatgtttgtttgtcaAATCAAAGAGTCAACAAATAACGATTT
GGTGAACGATACCTTGAACGAAGTGGAAAAATAAAGGAATCATATCTTTG
CTATGATTTTCAAATGATTTGGAgacttttaaacatttttagccgttttt
tgtttcttttttataaacttGGCATGGACAGCAGTAGCGTGGTTAGACTA
GAGTATACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGAATAGTG
TTATCTTACGTCGAATTTTACGCAAAAGGTATCAATAGATAtcgtttttt
ttctaaagtttgcaGTCTTTTTTCCTACCATGCAGAAACCACTCAAGGAA
ATTAGTCTAATAATAAGACTTCTGCTCATACTCTAGCGAAACGAGTTTCT
TATAGGAGCTATATCTATTGAGTTACATTAAAAGTGAATTGGAAATACTT
ATCCACGCAATGTTATCCACAGTTCACATCATTGGTATACATCCTGGTGC
ACGACAAACTTTGCCGCCTAATTTAGGAAAAAAAACATCCCAATTCTTCG
GTGTAAATACTTCAATTATCGGCTCAAGGATATAATTGCATAGTTTTTCA
ATATTGCTAAGAATTCAGAATACGCTGTCTCAGTGTTACACTTCGTCGGC
CTAGAAAACAAAAAGCGAAAACAACCGCAgcaccctcagccaaagtacaa
CTGTCTCTTTACAAAATGTATGAATCTCAAACTTTTTGTACAGTTTTTCA
ACTTTCCCTATATTTGAATTTGCCTTGATTGTTATTTTTTCAGGAATATC
GATACTCCAGTTTGGATTGGAATGAATTATGATACTTCAAAGAAGAAGTT
CTTTTGGAGAAATggagtctcaaaatttaagaGGTGGTGTCGTGGAGAGC
CTTCATTAAACCCAGACCCTTTAGCACCTAACCAATGCGTGGCTTACATA
GTTGGTGGAAAACCCCGTGGAAGAGGCACCGGAAAAGGTTGCATTAGGGT
GGAGCCATGTGGAACCACCATCGCACCCAATaagaaaatgtttgtttgtc
aAATCAAAGAGTCAACAAATAACGATTTGGTGAACGATACCTTGAACGAA
GTGGAAAAATAAAGGAATCATATCTTTGCTATGATTTTCAAATGATTTGG
AgacttttaaacatttttagccgttttttgtttcttttttataaacttGG
CATGGACAGCAGTAGCGTGGTTAGACTAGAGTATACTTTTGATTaaactt
tttgatgattttgatggcgctgaatccagtgaagtagactagaggattTT
GCCATCTTCAAtcttttcactttcattttcaaaaattatatgaaagtAAA
TGAAANAATCAAATGATTTGGAgacttttaaacatttttagccgtttttt
gtttcttttttataaacttGGCATGGACAGCAGTAGCGTGGTTAGACTAG
AGTATACTTCTGATTAAACTTTTTGATGATATTTTGATGGCGCTGATGAA
TCCAGTGAAGTAGAGGATTTTGacatcttcaattttttcactttcatttt
caaaaattatatgaaagtttatgaaactaaaaaaaacaagaaaatacctc
caaaatttgaaaaaattggtctattggttctttgtttgtttttctccaaa
aagggactggatct

Coding sequence (CDS) from alignment at scaffold_39:199434..204447+

>TCONS_00063447 ID=TCONS_00063447|Name=TCONS_00063447|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_39:199434..204447+ (Clytia hemisphaerica)
tttttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAGG
TCTGAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAA
CCGGTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATT
CTGAAAGATTGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAGT
TCGCTCGTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATT
ATTTCCGCCAATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGAC
GAATCTGACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGA
GTGCAAGAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTG
TTATCTTACGTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTGG
ATTGGAATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATgg
agtctcaaaatttaagaGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAG
ACCCTTTAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCC
CGTGGAAGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAAC
CACCATCGCACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCAA
CAAATAACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAttt
ttcctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAGGTCT
GAATGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAACCG
GTATCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATTCTG
AAAGATTGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAGTTCG
CTCGTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATTATT
TCCGCCAATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGACGAA
TCTGACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGAGTG
CAAGAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTGTTA
TCTTACGTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTGGATT
GGAATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATggagt
ctcaaaatttaagaGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACC
CTTTAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGT
GGAAGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCAC
CATCGCACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCAACAA
ATAACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAtttttc
ctctaCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAGGTCTGAA
TGACCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAACCGGTA
TCGACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATTCTGAAA
GATTGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAGTTCGCTC
GTGTGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATTATTTCC
GCCAATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGACGAATCT
GACGGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGAGTGCAA
GAACAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTGTTATCT
TACGTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTGGATTGGA
ATGAATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATggagtctc
aaaatttaagaGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTT
TAGCACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGA
AGAGGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCAT
CGCACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCAACAAATA
ACGATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAAtttttcctc
taCTCAACTTTTTGTAGAGGGATTACACTGGCATGGACAGGTCTGAATGA
CCACAAAGACAACACAATTGACGGAACGTTTGAATATTTAACCGGTATCG
ACGGATTTGTCCCTTTATCACCTCTCCCATCAAACAGCATTCTGAAAGAT
TGTGCTGCACTTCAGGttggaaatgaaaataaattcgaAGTTCGCTCGTG
TGGTGGGACAACAAAAATATGGTCGATTTGCAAAATGAATTATTTCCGCC
AATCCATTATCTTTGTACCAGCTGAAGTTCCACAAAGAGACGAATCTGAC
GGAGTATTAACCGAATTGAATTGGTCAGATGCGGATCAAGAGTGCAAGAA
CAAAGGGGGAGAATTGATGAACATTTGTGGCATGAATAGTGTTATCTTAC
GTCGAATTTTACGCAAAAGGAATATCGATACTCCAGTTTGGATTGGAATG
AATTATGATACTTCAAAGAAGAAGTTCTTTTGGAGAAATggagtctcaaa
atttaagaGGTGGTGTCGTGGAGAGCCTTCATTAAACCCAGACCCTTTAG
CACCTAACCAATGCGTGGCTTACATAGTTGGTGGAAAACCCCGTGGAAGA
GGCACCGGAAAAGGTTGCATTAGGGTGGAGCCATGTGGAACCACCATCGC
ACCCAATaagaaaatgtttgtttgtcaAATCAAAGAGTCAACAAATAACG
ATTTGGTGAACGATACCTTGAACGAAGTGGAAAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039766	XLOC_039766	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00063447-protein	TCONS_00063447-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_39	supercontig	scaffold_39:199434..204447 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.137131	5.61077	3.67229	8.12977	7.35213	1.38175	2.50953	0.905062	1.36863	2.73765e-06	0	2.79858	1.68387	0	0	0.0836737	0	0	0	0.0587966	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001304	C-type_lectin-like
IPR016186	C-type_lectin-like/link
IPR016187	CTDL_fold

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063447 vs. Swiss-Prot (Human)

BLAST of TCONS_00063447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00063447 (transcript) - C. hemisphaerica