TCONS_00063374 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063374
Unique Name	TCONS_00063374
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1856

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_387:24353..28621+

transcript sequence

>TCONS_00063374 ID=TCONS_00063374|Name=TCONS_00063374|organism=Clytia hemisphaerica|type=transcript|length=1856bp
GGCTGATAAAAAAACAAGGATAGAATGAACAAACCAGCGAAATAAACAAA
CGAAAACTGAATGCTTTTATCACTATTTTAATCCACAGTATGTTAATCTA
TGAGCCAATCAAAACATTTTGTTTTAACATTGAGCTAGCATGAACTATAA
ATTTCATTTATTTTATTCTAGCTAAGTGCTTGGTGCAAGAAACAGTCCAG
TTCAATGGATATTTTGGGTGCAGTTGTTGCGAAATCAAGGGTCAAAATGT
GTCAACTTCCAAAAATGGTTCAAAAATTGCTTTCCCGTTCGAGGAAGAAG
TGAAGTAAAGGGACTGGAAAAGGACCCTTGCTCAAGCCTCTGTTGCTCTT
GAATCTCAAACCACAGTTAATGGTGTTCGAGGATATTCAATATTGGGTGA
ACTACCTTTTGTCGATGTCATTTGGAACATTCCATTTGACTACATGCATG
GTACCTTTCTTGGAGTTGCTAGatcGCTCACAAGACTTTGGTTTGATACT
TCTCACTCTAAAGAAGAATGGTATCTGGGGAAATACATCAACACACTTGA
TCAAAAGCTACTGAAAGTCCAGCCTCCTGATGAAATTTCACGCCTCCCTC
GAAGTCTTTCCCATCGCAATTACTATAAAGCTAATGAATACAGAAATTGG
GTGATGTACTACAGCCCAATCCTATTGAAAGGTTATCTGCCTGACAAATT
TTACAGTCACTACTTGCTTCTGGTAAATGGTATTTTCCTTCTCCAAAAAG
AAGAAGTCAGTTATTCTGAAATAGATCTTGCCGAAGAACACCTGCATTTG
TTTTGGGGCAGAATGGATTTGTTNTTTTCCTTCTCCAAAAAGAAGAAGTC
AGTTATTCTGAAATAGATCTTGCCGAAGAACACCTGCATTTGTTTTGGGG
CAGAATGGATTTGTTATATGGAACAGGGGAATGCAAAGCAAACACTCACA
ATGTATCCCATTATGGAGAACAAGTCCGAATCAATGGACCCCTATGGGCA
TCAATGTCTGGATTCAACTATGAGAATTGGAATTCAGACTTTAAGTATCT
ATTTCATGGAACACAACATGTTGAGCAACAGGTTATTCAGGCAGTGAATA
TGGATATGAGACTTGTGGAATGGGGATCCAATGTGTCAAGTTTCACACCA
GAGGGAGAGTTCTTTCATAAATTGTGTGGAAACAAgaaTATTTCAAATAC
TTCGAAAAACTGCTTCGGACCATTCATGAAAGTAAAACCTGAATCTGTGC
TTTCATTTGAATGTGAAACTTGTGTCTCGAGCATGATTCAATGGGATGAA
TTActtgaatttcaaaagattaAATTTGGGAATTCATACATCAAATCTGA
GAAGTATGGAAGATCCTCAGCAAGGAAAAATAGCGCTGTGATTGTTAATT
ATCAAAAGCAAACTTTGCCAGGATTGGTCTTATTTTTCATGAAGGGGAAA
GATGAGAATGTAACCCTTGCAGTAGTTGAGGTTTtaaaagaaatggaaag
tgaTATATGTGGTGTTATGGACAAGAAAATTATCTCACTTAGTCATATCA
AGGCTTTTAAAAGAAccgagaagaaaattattgtAAAAACAGAATCAATC
AATGAAAAGAAGGTTTGTGTAGAACAAAGAAAAACTTATTATTTTATTGA
CTTTGTAAATAGGTTTGAAAGTGACTAGTTATGGTTACAGAGaaagataa
tattttttataacttaTATTAATTTCAAATCGTACTTTATAGATCTAAGT
GGTTATACTTTATCCGTACCAATTTCTGTGTGTATCTTATTTTGCGTATC
TAGATGTAATTTTTCGCACATATTTTTTGTGCACAAaccaaaaccttcat
tccaaG

Run BLAST on NCBI

transcript from alignment at scaffold_387:24353..28621+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063374 ID=TCONS_00063374|Name=TCONS_00063374|organism=Clytia hemisphaerica|type=transcript|length=4269bp|location=Sequence derived from alignment at scaffold_387:24353..28621+ (Clytia hemisphaerica)
GGCTGATAAAAAAACAAGGATAGAATGAACAAACCAGCGAAATAAACAAA
CGAAAACTGAATGCTTTTATCACTATTTTAATCCACAGTATGTTAATCTA
TGAGCCAATCAAAACATTTTGTTTTAACATTGAGCTAGCATGAACTATAA
ATTTCATTTATTTTATTCTAGCTAAGTGCTTGGTGCAAGAAACAGTCCAG
TTCAATGGATATTTTGGGTGCAGTTGTTGCGAAATCAAGGGTCAAAATGT
GTCAACTTCCAAAAATGGTTCAAAAATTGCTTTCCCGTTCGAGGAAGAAG
TGAAGTAAAGGGACTGGAAAAGGACCCTTGCTCAAGCCTCTGTTGCTCTT
GAATCTCAAACCACAGTATGACTTTTCTTTGTATTATACTGTATATATAT
TAGCTTCTTGCTTATTAAAATGTAAGCACTTGTATATTTAAAATACTAAA
AACTTTTGCTTTATGAAATTACCCCAAACTCTTTATTTTTTCAGGTTAAT
GGTGTTCGAGGATATTCAATATTGGGTGAACTACCTTTTGTCGATGTCAT
TTGGAACATTCCATTTGACTACATGCATGGTACCTTTCTTGGAGTTGCTA
GGTTAGTTATGCCATCTGtcttataattttttctaaCTTTATAAATGTTT
GAAGAATTATTATTCCTTCCATTCCAACTTGTGTGTATTTAATTACTTGG
TCTATTTCAAAccgttttaattttttagatcGCTCACAAGACTTTGGTTT
GATACTTCTCACTCTAAAGAAGAATGGTATCTGGGGAAATACATCAACAC
ACTTGATCAAAAGCTACTGAAAGTCCAGCCTCCTGATGAAATTTCACGCC
TCCCTCGAAGTCTTTCCCATCGCAATTACTATAAAGGTACACATATTGTG
CTTactcaaaaaaaattagaaagctATGCACAAGTTTTAAACAATTTCTT
TAGCACCTTTCTAGTAACTGTGAGCATAACATAGATTAAAGTAAACAGAC
ATCTGTAGCACTTGTTTTGTTATTTTAGCTAATGAATACAGAAATTGGGT
GATGTACTACAGCCCAATCCTATTGAAAGGTTATCTGCCTGACAAATTTT
ACAGGTAAGGAAATAAAATTTACTACGTAGGTATTTATTATGCATGAAAG
TTTTAATGCTTCTAATATTTTTACCTTGAAAGATCATTCTGTTTATGCCT
TGTGAAACGATCAATTACAAGAAATGTCAgatttatttttccaaaagatt
AATGGTATTGTTTTCATACATTTCAGTCACTACTTGCTTCTGGTAAATGG
TATTTTCCTTCTCCAAAAAGAAGAAGTCAGTTATTCTGAAATAGATCTTG
CCGAAGAACACCTGCATTTGTTTTGGGGCAGAATGGATTTGTTNTTTTCC
TTCTCCAAAAAGAAGAAGTCAGTTATTCTGAAATAGATCTTGCCGAAGAA
CACCTGCATTTGTTTTGGGGCAGAATGGATTTGTTATATGGTAGTTAtca
tattttcaacatttttgtaatCTATAAGCCTATACACTTTGAACATGTGG
TCTGAATCGAAAAATTAGTCTCTACCACTGTTAAAGGCAAGATTTTAAGT
ATATactaaaaattagatttttactaaaaattcNAAAAATTAGCCTCTAC
CACTGTTAAAGGCAAGATTTTAAAGTATATActaaaaattagattttaaa
ttttttattctaGGAACAGGGGAATGCAAAGCAAACACTCACAATGTATC
CCATTATGGAGAACAAGTCCGAATCAATGGACCCCTATGGGCATCAATGT
CTGGATTCAACTATGAGAATTGGAATTCAGACTTTAAGTATCTATTTCAT
GGAACACAACATGTTGAGCAACAGGTTAGGGAACAACAGTGTATGTAACA
GTGGcatttttcatatcaaaaatattcatgagCTTTTTGAATTTAGAGGA
TGATATCTGGATTTATTTGGATTCGTTTATTGATACAAAGATaacaaaca
aagaaatatcaatttttatttcagatATTTTCTAAAGATATATTTTCCTT
AACAGGTTATTCAGGCAGTGAATATGGATATGAGACTTGTGGAATGGGGA
TCCAATGTGTCAAGTTTCACACCAGAGGGAGAGTTCTTTCATAAATTGTG
TGGAAACAAGTAAGATTTCTCTCATCTCTCTATAGTTATTTTGGATGATG
TCCTTAAAACATTTCTAATCTTCTCTCTGAATTCCTACAAaatgtattta
ttttatttttcaaatttaggaaTATTTCAAATACTTCGAAAAACTGCTTC
GGACCATTCATGAAAGTAAAACCTGAATCTGTGCTTTCATTTGAATGTGA
AACTTGTGTCTCGAGCATGATTCAATGGTATGTGTaactgtattttcatt
ttctttttattcaactttctatttttcaaacaaattttccTTAACTTTTC
TTTCTCTGTTTCATTACCAGGGATGAATTActtgaatttcaaaagattaA
ATTTGGGAATTCATACATCAAATCTGAGAAGTATGGAAGATCCTCAGCAA
GGAAAAATAGCGCTGTGATTGTTAATTATCAAAAGCAAACTTTGCCAGGA
TTGGTCTTATTTTTCATGAAGGTACGAATAGTTTCATCAGATGGTAATTG
ATTTATACTAATGAAATTGGTAAACAATTAAGGtggatgtttttaaaaat
gtccTAGTGGGTCAAAAAGTACTTATGAAGGTGAATTGACAGAAGAATTA
ATAAATCGTTAATTACTTATTAGGGGAAAGATGAGAATGTAACCCTTGCA
GTAGTTGAGGTTTtaaaagaaatggaaagtgaTATATGTGGTGTTATGGA
CAAGAAAATTATCTCACTTAGTCATATCAAGGCTTTTAAAAGGTATAACG
TTTGATGTGACTAATTATAGGttccaatattttaaaaaattaagagaaat
tcaaattcagtacTTTGTTGTGAACTCTTTTTAATGTCAAAAACGACAAG
TTGCATGTTTATATTTACCTAATACCATTNGAGACTTGTGGAATGGGGAT
CCAATGTGTCAAGTTTCACACCAGAGGGAGAGTTCTTTCATAAATTGTGT
GGAAACAAGTAAGATTTCTCTCATCTCTCTATAGTTATTTTGGATGATGT
CCTTAAAACATTTCTAATCTTCTCTCTGAATTCCTACAAaatgtatttat
tttatttttcaaatttaggaaTATTTCAAATACTTCGAAAAACTGCTTCG
GACCATTCATGAAAGTAAAACCTGAATCTGTGCTTTCATTTGAATGTGAA
ACTTGTGTCTCGAGCATGATTCAATGGTATGTGTaactgtattttcattt
tctttttattcaactttctatttttcaaacaaattttccTTAACTTTTCT
TTCTCTGTTTCATTACCAGGGATGAATTActtgaatttcaaaagattaAA
TTTGGGAATTCATACATCAAATCTGAGAAGTATGGAAGATCCTCAGCAAG
GAAAAATAGCGCTGTGATTGTTAATTATCAAAAGCAAACTTTGCCAGGAT
TGGTCTTATTTTTCATGAAGGTACGAATAGTTTCATCAGATGGTAATTGA
TTTATACTAATGAAATTGGTAAACAATTAAGGtggatgtttttaaaaatg
tccTAGTGGGTCAAAAAGTACTTATGAAGGTGAATTGACAGAAGAATTAA
TAAATCGTTAATTACTTATTAGGGGAAAGATGAGAATGTAACCCTTGCAG
TAGTTGAGGTTTtaaaagaaatggaaagtgaTATATGTGGTGTTATGGAC
AAGAAAATTATCTCACTTAGTCATATCAAGGCTTTTAAAAGGTATAACGT
TTGATGTGACTAATTATAGcttctaattttttaaaaaattaagagaaatt
caaattcagtacTTTGTTGTGAACTCTTTTTAATGTCAAAAACGACAAGT
TGTGTTTATATTTACCTAATACTTAGAAccgagaagaaaattattgtAAA
AACAGAATCAATCAATGAAAAGAAGGTTTGTGTAGAACAAAGAAAAACTT
ATTATTTTATTGACTTTGTAAATAGGTTTGAAAGTGACTAGTTATGGTTA
CAGAGaaagataatattttttataacttaTATTAATTTCAAATCGTACTT
TATAGATCTAAGTGGTTATACTTTATCCGTACCAATTTCTGTGTGTATCT
TATTTTGCGTATCTAGATGTAATTTTTCGCACATATTTTTTGTGCACAAa
ccaaaaccttcattccaaG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039710	XLOC_039710	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_387	supercontig	scaffold_387:24353..28621 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0430817	0	0	0	0	0.0688648	0.0553883	0.0591698	0.0414262	0.0962815	0.0218237	0.0470864	0.0367373	0.103003	0.0122316	0.0656319	0	0	0	0	0.0208269	0	0	0.0449087	0.0296535	0.0942114	0	0.0315224	0.0717259	0.0243591

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00063374 vs. Swiss-Prot (Human)

BLAST of TCONS_00063374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00063374 (transcript) - C. hemisphaerica