TCONS_00063127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063127
Unique NameTCONS_00063127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1223

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063127 ID=TCONS_00063127|Name=TCONS_00063127|organism=Clytia hemisphaerica|type=transcript|length=1223bp
gatattttgtcttttttgtgttTGCCGATTATTTTCTTTGTGTGAACATG
GTCAAAAAGATTGTTATGATGTATCATATGTAAAGCATATTCAGCTATTT
CTTTCAGAGGTCTAAAACTCttattatttcaaaagtttctcgCTTAGCAT
TTGAGTAACAGTAGAAATATcatcaaatatttaaaaaaaatgggtCAGAA
AAGGCTGAAGAAAGGAAAAAGTTatgacaaattttagtgaaCTTTATACG
AGAACTCGATACCAAGAAGACAATTTTATAGTTGAAAATATATACTAATA
TAGCAACAGCAAAATTATTATGGGAACAAGGGTTGAGTTTTGAACAACTA
TTGTATAGCATGAAGGacttttttgcaaatatttttcaattcgaATTAAC
AACGCAATGTAATTGGCTTCCAGCGAATCAGTTTTTATTCCAGCTGGCAA
ACATTTCCCTTGTATTGACTTATTTTGTTAAACCAAGTGGTCTTTATGAA
TTGATCCAGCTTCGCGTCTCTCTTACATGCGCTGGACTCTGTTTCGGACT
ATGGGGAGGAACTGTGATCTGCTCATTAGACTGTATGGTATGGAATCTAG
CCTTTACTGTTGGAAACGCATGTCATTTAGTGTACATTCTAGCCAAAATG
TGGCCATCTCCTTTCAAAAATAGTCACCACGAATTAATTTTTGTTAACGT
TTTTGGACCTGTTGGTTTGAAAAGATATCAATTTAGGACATTGATGACTA
AGGCTAAAGAGATACAACTACAGACTGGGGAGTATTACGCAAGACAGGGT
TACACCGATTCGAAGCATATTTCAATATTAGCTGACGGATGtGTGGAAGT
TTTGATTAATGGACAGTCGACCAACTATGTCGAACTATTCGAATTCTTAG
ATTCACCAGAATGGCTGACTCTGACGGATGATGATGCACCTTCAAAATAT
CAGGTTTCTTTAGTAGCTGCGGAAGATTCGGTTATCTATCAATTCCAAAG
AAAAGACTTGTTTACAATCTTTCGTAAAGATGAACTCCTAAAGAATAtct
ttgattccatcattggtAAAGACATCTGCAAGAAATTGTATTCATTACAT
CAATCCTTCTTGATGAAAGATTGTataaccatagtataagaaagccgcgg
ctggaatatgtaccgcattgtcttttgagttaattgctgttccatctctg
tctccgagctttataagaacatc
Run BLAST on NCBI

protein sequence of TCONS_00063127-protein

>TCONS_00063127-protein ID=TCONS_00063127-protein|Name=TCONS_00063127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MKDFFANIFQFELTTQCNWLPANQFLFQLANISLVLTYFVKPSGLYELIQ
LRVSLTCAGLCFGLWGGTVICSLDCMVWNLAFTVGNACHLVYILAKMWPS
PFKNSHHELIFVNVFGPVGLKRYQFRTLMTKAKEIQLQTGEYYARQGYTD
SKHISILADGCVEVLINGQSTNYVELFEFLDSPEWLTLTDDDAPSKYQVS
LVAAEDSVIYQFQRKDLFTIFRKDELLKNIFDSIIGKDICKKLYSLHQSF
LMKDCITIV
Run BLAST on NCBI

transcript from alignment at scaffold_380:64723..66920-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063127 ID=TCONS_00063127|Name=TCONS_00063127|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at scaffold_380:64723..66920- (Clytia hemisphaerica)
GATATTTTGTCTTTTTTGTGTTTGCCGATTATTTTCTTTGTGTGAACATG
GTCAAAAAGATTGTTATGATGTATCATATGTAAAGCATATTCAGCTATTT
CTTTCAGAGGTCTAAAACTCTTATTATTTCAAAAGTTTCTCGCTTAGCAT
TTGAGTAACAGTAGAAATATCATCAAATATTTAAAAAAAATGGGTCAGAA
AAGGCTGAAGAAAGGAAAAAGTTATGACAAATTTTAGTGAACTTTATACG
AGAACTCGATACCAAGAAGACAATTTTATAGTTGAAAATATATACTAATA
TAGCAACAGCAAAATTATTATGGGAACAAGGGTTGAGTTTTGAACAACTA
TTGTATAGCATGAAGGACTTTTTTGCAAATATTTTTCAATTCGAATTAAC
AACGCAATGTAATTGGCTTCCAGCGAATCAGTTTTTATTCCAGCTGGCAA
ACATTTCCCTTGTATTGACTTATTTTGTTAAACCAAGTGGTCTTTATGAA
TTGATCCAGCTTCGCGTCTCTCTTACATGCGCTGGACTCTGTTTCGGACT
ATGGGGAGGAACTGTGATCTGCTCATTAGACTGTATGGTATGGAATCTAG
CCTTTACTGTTGGAAACGCATGTCATTTAGTGTACATTCTAGCCAAAATG
TGGCCATCTCCTTTCAAAAATAGTCACCACGAATTAATTTTTGTTAACGT
TTTTGGACCTGTTGGTTTGAAAAGATATCAATTTAGGACATTGATGACTA
AGGCTAAAGAGATACAACTACAGACTGGGGAGTATTACGCAAGACAGGGT
TACACCGATTCGAAGCATATTTCAATATTAGCTGACGGATGGTAAGCGCT
GGCTACAGTAGAATATATTTATGTAATCTAGTAAGCTAGGTTGAATACTT
GATTGTAAAAAAAAAGTCCCAGCCTTTATACCAATTTACTCTGGATTTCT
GCGCTATGATAATGAATTCAGATAATATTAAAAAACCCACTGATCTTATG
TATGCACCAGGGGGATCGGTTTCTAGTTCACTTATTCTCTGTTTTCCGTG
AGCGTGTTAACTCAATAATTCCAGATAATTTGACGCCATTCAAAATTTGT
GAATCTGTATCGGCTTTACAAGACAAGGAGCTTTTTGGGTACAATGGTGA
TGTTTGTTTCCATATGAAGTGTTATAATTCGAAAACTACATAAAATTACA
ATGAAATTAATTTAGATTTATTTCAATTGCTCTGTTAACTTATCAATACT
AACTTCAACAGGGTTAAGAATTTAGTTTTCTATAGGTACCGATCTTGATT
CTTTCTTTTGATACAGTGTGGAAGTTTTGATTAATGGACAGTCGACCAAC
TATGTCGAACTATTCGAATTCTTAGATTCACCAGAATGGCTGACTCTGAC
GGATGATGATGCACCTTCAAAATATCAGGTTTCTACCTTTTGCTTATCTA
ATATTCTAATTTTATTTGCTTGTCACGCAAAATTCTTTGCTATTATTATC
ACGATCTAGAAAAATCGCTGAAATTCATCACCATGCAGTAAAAAGTAGCC
CAAATCACGCATCGCATCCTTTAAATTCTTACCCTTTTGCACAGCACTTT
GCGAAATCTTTATTTCTCCATCACGCAAAAAAAAATTTGGACTCATGCCA
CCACCACGCAAGGAAAAAGTCCTGATCACCAAATCACGCAAACCCTCCGG
GAGGGGGATGCTGGACTGATCCCTTAACTGGGTTAAGCCTACTATAAATG
AGGTTAATTCAACTTTTAAGCGAAGAAGTAAGTTGATAGCCACTAATTTT
TTGATTTGGTGAAAACGACGGAAACGTTTGTAGGGTAATCTAGTTTTCCC
CGGCTCTTTTCGTCGCGTAGACTGCGTAAACTGTCTAAAGTAAATCTATT
TCTTAGATCATCACTTTTCCATCAATAGGTTTCTTTAGTAGCTGCGGAAG
ATTCGGTTATCTATCAATTCCAAAGAAAAGACTTGTTTACAATCTTTCGT
AAAGATGAACTCCTAAAGAATATCTTTGATTCCATCATTGGTAAAGACAT
CTGCAAGAAATTGTATTCATTACATCAATCCTTCTTGATGAAAGATTGTA
TAACCATAGTATAAGAAAGCCGCGGCTGGAATATGTACCGCATTGTCTTT
TGAGTTAATTGCTGTTCCATCTCTGTCTCCGAGCTTTATAAGAACATC

Coding sequence (CDS) from alignment at scaffold_380:64723..66920-

>TCONS_00063127 ID=TCONS_00063127|Name=TCONS_00063127|organism=Clytia hemisphaerica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_380:64723..66920- (Clytia hemisphaerica)
GTTTCTTTAGTAGCTGCGGAAGATTCGGTTATCTATCAATTCCAAAGAAA
AGACTTGTTTACAATCTTTCGTAAAGATGAACTCCTAAAGAATATCTTTG
ATTCCATCATTGGTAAAGACATCTGCAAGAAATTGTATTCATTACATCAA
TCCTTCTTGATGAAAGATTGTATAACCATAGTATAATGTGGAAGTTTTGA
TTAATGGACAGTCGACCAACTATGTCGAACTATTCGAATTCTTAGATTCA
CCAGAATGGCTGACTCTGACGGATGATGATGCACCTTCAAAATATCAGAT
GAAGGACTTTTTTGCAAATATTTTTCAATTCGAATTAACAACGCAATGTA
ATTGGCTTCCAGCGAATCAGTTTTTATTCCAGCTGGCAAACATTTCCCTT
GTATTGACTTATTTTGTTAAACCAAGTGGTCTTTATGAATTGATCCAGCT
TCGCGTCTCTCTTACATGCGCTGGACTCTGTTTCGGACTATGGGGAGGAA
CTGTGATCTGCTCATTAGACTGTATGGTATGGAATCTAGCCTTTACTGTT
GGAAACGCATGTCATTTAGTGTACATTCTAGCCAAAATGTGGCCATCTCC
TTTCAAAAATAGTCACCACGAATTAATTTTTGTTAACGTTTTTGGACCTG
TTGGTTTGAAAAGATATCAATTTAGGACATTGATGACTAAGGCTAAAGAG
ATACAACTACAGACTGGGGAGTATTACGCAAGACAGGGTTACACCGATTC
GAAGCATATTTCAATATTAGCTGACGGATGGTTTCTTTAGTAGCTGCGGA
AGATTCGGTTATCTATCAATTCCAAAGAAAAGACTTGTTTACAATCTTTC
GTAAAGATGAACTCCTAAAGAATATCTTTGATTCCATCATTGGTAAAGAC
ATCTGCAAGAAATTGTATTCATTACATCAATCCTTCTTGATGAAAGATTG
TATAACCATAGTATAATGTGGAAGTTTTGATTAATGGACAGTCGACCAAC
TATGTCGAACTATTCGAATTCTTAGATTCACCAGAATGGCTGACTCTGAC
GGATGATGATGCACCTTCAAAATATCAGATGAAGGACTTTTTTGCAAATA
TTTTTCAATTCGAATTAACAACGCAATGTAATTGGCTTCCAGCGAATCAG
TTTTTATTCCAGCTGGCAAACATTTCCCTTGTATTGACTTATTTTGTTAA
ACCAAGTGGTCTTTATGAATTGATCCAGCTTCGCGTCTCTCTTACATGCG
CTGGACTCTGTTTCGGACTATGGGGAGGAACTGTGATCTGCTCATTAGAC
TGTATGGTATGGAATCTAGCCTTTACTGTTGGAAACGCATGTCATTTAGT
GTACATTCTAGCCAAAATGTGGCCATCTCCTTTCAAAAATAGTCACCACG
AATTAATTTTTGTTAACGTTTTTGGACCTGTTGGTTTGAAAAGATATCAA
TTTAGGACATTGATGACTAAGGCTAAAGAGATACAACTACAGACTGGGGA
GTATTACGCAAGACAGGGTTACACCGATTCGAAGCATATTTCAATATTAG
CTGACGGATGGTTTCTTTAGTAGCTGCGGAAGATTCGGTTATCTATCAAT
TCCAAAGAAAAGACTTGTTTACAATCTTTCGTAAAGATGAACTCCTAAAG
AATATCTTTGATTCCATCATTGGTAAAGACATCTGCAAGAAATTGTATTC
ATTACATCAATCCTTCTTGATGAAAGATTGTATAACCATAGTATAATGTG
GAAGTTTTGATTAATGGACAGTCGACCAACTATGTCGAACTATTCGAATT
CTTAGATTCACCAGAATGGCTGACTCTGACGGATGATGATGCACCTTCAA
AATATCAGATGAAGGACTTTTTTGCAAATATTTTTCAATTCGAATTAACA
ACGCAATGTAATTGGCTTCCAGCGAATCAGTTTTTATTCCAGCTGGCAAA
CATTTCCCTTGTATTGACTTATTTTGTTAAACCAAGTGGTCTTTATGAAT
TGATCCAGCTTCGCGTCTCTCTTACATGCGCTGGACTCTGTTTCGGACTA
TGGGGAGGAACTGTGATCTGCTCATTAGACTGTATGGTATGGAATCTAGC
CTTTACTGTTGGAAACGCATGTCATTTAGTGTACATTCTAGCCAAAATGT
GGCCATCTCCTTTCAAAAATAGTCACCACGAATTAATTTTTGTTAACGTT
TTTGGACCTGTTGGTTTGAAAAGATATCAATTTAGGACATTGATGACTAA
GGCTAAAGAGATACAACTACAGACTGGGGAGTATTACGCAAGACAGGGTT
ACACCGATTCGAAGCATATTTCAATATTAGCTGACGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039544XLOC_039544Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063127-proteinTCONS_00063127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063127-exon-scaffold_380-1575043694:66080..66920TCONS_00063127-exon-scaffold_380-1575043694:66080..66920Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1575043694:65493..65604TCONS_00063127-exon-scaffold_380-1575043694:65493..65604Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1575043694:64723..64992TCONS_00063127-exon-scaffold_380-1575043694:64723..64992Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1510915933:66080..66920TCONS_00063127-exon-scaffold_380-1510915933:66080..66920Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1510915933:65493..65604TCONS_00063127-exon-scaffold_380-1510915933:65493..65604Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1510915933:64723..64992TCONS_00063127-exon-scaffold_380-1510915933:64723..64992Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1491911889:66080..66920TCONS_00063127-exon-scaffold_380-1491911889:66080..66920Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1491911889:65493..65604TCONS_00063127-exon-scaffold_380-1491911889:65493..65604Clytia hemisphaericaexon
TCONS_00063127-exon-scaffold_380-1491911889:64723..64992TCONS_00063127-exon-scaffold_380-1491911889:64723..64992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_380supercontigscaffold_380:64723..66920 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.068711	0	0.0391844	0.0481079	0	0	0	0.184481	0.148711	0.251055	0.269035	0	0	0.102485	0.0894507	1.9083	4.09913	0.038203	0.0802308	6.28347	6.71375	0.485111	0.733971	1.87907	1.30834	0	0	0.039464	0.0397426
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR006916Popeye_prot
IPR018490cNMP-bd-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00063127 vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.160e-23
Identity = 55/188 (29.26%), Postives = 97/188 (51.60%), Query Frame = 3 
Query:  537 LCFGLWGGTVICSLDCMVWNLAFTVGNACHLVYILAKMWPSPFKNSHHELIFVNVFGPVGLKRYQFRTLMTKAKEIQLQTGEYYARQGYTDSKHISILADGCVEVLINGQSTNYVELFEFLDSPEWLTLTDDDAPSKYQVSLVAAEDSVIYQFQRKDLFTIFRKDELLKNIFDSIIGKDICKKLYSLH 1100
            LC  +W    +C+ D   WN    V      V+I  ++    F     ++++ ++F P+G+    FRT+   ++ + L+    YA QG T    +S+L  G + V ++G+  +Y+   +FLDSPEW +L   +    +QV+L A  D     ++RK L+ +F +   +  +F  +IG DI  KLY+L+
Sbjct:   62 LCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREF-QVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEE-GIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALN 247
The following BLAST results are available for this feature:
BLAST of TCONS_00063127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POPD31.160e-2329.26Popeye domain-containing protein 3 OS=Homo sapiens... [more]
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