TCONS_00063127-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063127-protein
Unique NameTCONS_00063127-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length259

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063127-protein ID=TCONS_00063127-protein|Name=TCONS_00063127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MKDFFANIFQFELTTQCNWLPANQFLFQLANISLVLTYFVKPSGLYELIQ
LRVSLTCAGLCFGLWGGTVICSLDCMVWNLAFTVGNACHLVYILAKMWPS
PFKNSHHELIFVNVFGPVGLKRYQFRTLMTKAKEIQLQTGEYYARQGYTD
SKHISILADGCVEVLINGQSTNYVELFEFLDSPEWLTLTDDDAPSKYQVS
LVAAEDSVIYQFQRKDLFTIFRKDELLKNIFDSIIGKDICKKLYSLHQSF
LMKDCITIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039544XLOC_039544Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063127TCONS_00063127Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014710RmlC-like_jellyroll
IPR006916Popeye_prot
IPR018490cNMP-bd-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 111..250
e-value: 1.7E-10
score: 40.1
IPR006916Popeye proteinPFAMPF04831Popeyecoord: 23..248
e-value: 9.8E-35
score: 119.6
NoneNo IPR availableCDDcd00038CAP_EDcoord: 119..231
e-value: 2.87646E-6
score: 43.0834
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 119..233

Blast
[Close]
BLAST of TCONS_00063127-protein vs. Swiss-Prot (Human)
Match: POPD3 (Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 8.542e-25
Identity = 55/188 (29.26%), Postives = 97/188 (51.60%), Query Frame = 0 
Query:   60 LCFGLWGGTVICSLDCMVWNLAFTVGNACHLVYILAKMWPSPFKNSHHELIFVNVFGPVGLKRYQFRTLMTKAKEIQLQTGEYYARQGYTDSKHISILADGCVEVLINGQSTNYVELFEFLDSPEWLTLTDDDAPSKYQVSLVAAEDSVIYQFQRKDLFTIFRKDELLKNIFDSIIGKDICKKLYSLH 247
            LC  +W    +C+ D   WN    V      V+I  ++    F     ++++ ++F P+G+    FRT+   ++ + L+    YA QG T    +S+L  G + V ++G+  +Y+   +FLDSPEW +L   +    +QV+L A  D     ++RK L+ +F +   +  +F  +IG DI  KLY+L+
Sbjct:   62 LCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREF-QVLYSSLFQPLGISLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEE-GIFQVTLTAETDCRYVSWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALN 247
The following BLAST results are available for this feature:
BLAST of TCONS_00063127-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
POPD38.542e-2529.26Popeye domain-containing protein 3 OS=Homo sapiens... [more]
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