TCONS_00062758 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062758
Unique NameTCONS_00062758
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062758 ID=TCONS_00062758|Name=TCONS_00062758|organism=Clytia hemisphaerica|type=transcript|length=2373bp
ATCAACTTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGTGGatatttat
CAAAATGGAAGAGAAacctaaaatgaaaacattgggAGACGAGGCACCTT
CTAAAGTGACACCAATGTCAGTCCTTGGACAAGATAAAGCATCTACATCA
TCTTTAAGGAATCCTGGCATGTCATCAAATCAATCTTTGGTTATGCAACT
TCAGCACGCAACACAAATGTCCAATATCACTGGAACTGCAACAACAGCGA
CTTCATCATCAACACAACCAGGGGCCACTGATacacaacaacagcaacaa
caacagcaaacAAATACTGCCACACCTTTGACAGAGTACACTATGTACCA
CCATTTACCATCTACAGTCATGAACCAACAAAATAATACAGATGATGGAG
ATGGTGCTGGTTCATACGATGACAGCCCACGTGAAATGAGAGAACAAGAA
TTAAGGGAACAAGACCGTTTTCTACCCATCGCCAATGTGGCTCGAATTAT
GAAACGTGGTGTCCCTGAGACAGGAAAGATTGCAAAAGATGCCAAGGAGT
GTGTTCAAGAATGTGTATCAGAGTTCATCAGTTTCATCACTAGCGAAGCA
AGCGAACGATGTCAAcaagaaaaacgaaaaacaatTAATGGAGAAGACAT
CTTGTTTGCAATGACAACCCTAGGTTTCGATAATTACGTTGAGCCTTTGA
AAGTTTACTTGACCAAATATCGAGAGAGTTTGAAAGGCGAGAAAGTTTTG
AACGTTGCGGAATATGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGG
ATTATCGGCTATACAATATCAAATCGCTGGTAGCAACCTTCATCCGAGCA
TGGTTTCTGCTGATGGAACACCGTACGCTGCGTACACTCAAGCTCAAATT
AATCAAGTCAATTCACAGATTCAATTCAACACGTGACAAGAAAAATCTAT
GAACATGTAAATTTGGATCAATCACAGAGAAGCTACCAGTTTGGGGATAT
TTGCAGTGAAGTTGCCACAAGGGGGTTGTTGTGTTTGATATGGATGGAGG
ATGGGATGGTTAACGTGTCAAAGCTTTACAACAAAAGCTAGTTTTAAGCA
AGACTCGATTATCATCATAACAACTTTAATGTCTTCAGGCCCAAAAACAA
TCTGTTGTGTGTCCAATTGTCAACTTGACGTATGTCGGACATTTTTAGAA
GGAAGTTAGTCCACCTAAAATATAGTATAGATCTTTGCGTCGCCTGGCAG
AATCGCCCAAGTAACAAATATTTATGCCCCCATAGATATTTCTAGGTTTT
TCTCGGACGCTCCGGATTTTTTAAACATCTCAAGATCCATATAGAATACA
AATCAAAAGGTTCAAGCTGTCCGCAGTAATTTACATGCCCACCTATTTTG
CGTTATTATTTTGCCACGTAAATGTGagcaaatttatttatttttaaact
taTTCATCGtttttagatgttttttttttgtaaataatcaAACTACAACG
TACCTTACTTTAATAGTTAGAAGTGAAATACAGTTTATCAGTTAAATTCT
AAGTGACTAACGTTTCTAACGTCGTTTTGCATAATATTCCACTTCCCGCT
CTAAGATTCTCCTGACTTTCCGGGATTTTTCCGCTATTTTACCCACGAGA
ACCGACGTGAGATTGGAAAcggttttttaaaaatcttttgttcaCTTTTG
AAACTGtctaactttccgaagctcatttttcaactacccagagtcctggt
ctttttccgctagaaaagttGAATCTTATGCCAAATGACGGTAATAATAT
GATCTGTTATATTTTGTTTGGCTCAATTACTGTACTAGTTCAGGCATTTC
ACAACTTTAGAACAATCACAATgatcaaaatttcgaaagaaAGAGAACAA
AGCCAAAGGTTTCTTACAgtgtaaaaatatatatattgcaaataatttca
aaaaaataactaTTATAATTcaatataattaaaaaaaaaactattttaca
TGTTACATTTAGATTTTCTCACAATCGTTGTTTTTGAAATTGGCTAGGtc
aactgaaatattttaaagCTTTAGCGGTCTTGTCTAAAATAAAGTCGGTA
CGATCTCAACAATTGTAATTTTCGGGTACTACTTTTGTCGGGTTGCACGA
AAGCGACGTTTATGTAAGTTTCCATTTGGGATCCCTGTTTAACATCTTCC
AAATCCTTGCttcttcaaacaaaagaaaagaggcCTTGTTCTTCCCCTCC
AAATTCTTCGTCCTGCAAAACTGTTTGAATACGCATTCGCTGTTCCACTT
TTTGATAGAGTTCAAATGATATTTCTTCTTCGGAAAGAAAGCTCAAAATT
CCTTTGGCGCCCTGTAAATGGCA
Run BLAST on NCBI

protein sequence of TCONS_00062758-protein

>TCONS_00062758-protein ID=TCONS_00062758-protein|Name=TCONS_00062758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
INLVDESEWLSRLWIFIKMEEKPKMKTLGDEAPSKVTPMSVLGQDKASTS
SLRNPGMSSNQSLVMQLQHATQMSNITGTATTATSSSTQPGATDTQQQQQ
QQQTNTATPLTEYTMYHHLPSTVMNQQNNTDDGDGAGSYDDSPREMREQE
LREQDRFLPIANVARIMKRGVPETGKIAKDAKECVQECVSEFISFITSEA
SERCQQEKRKTINGEDILFAMTTLGFDNYVEPLKVYLTKYRESLKGEKVL
NVAEYAHHVDSEEQASGLSAIQYQIAGSNLHPSMVSADGTPYAAYTQAQI
NQVNSQIQFNT
Run BLAST on NCBI

transcript from alignment at scaffold_371:551935..560432-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062758 ID=TCONS_00062758|Name=TCONS_00062758|organism=Clytia hemisphaerica|type=transcript|length=8498bp|location=Sequence derived from alignment at scaffold_371:551935..560432- (Clytia hemisphaerica)
ATCAACTTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGTGGGTAAATTT AAATTCTTTTTTATGATTTCTCGGAAATAATAAACAAGCACATGTTAAAC ACATGTTTACTTCATTGCCTAACCCTGAACAAGTTCACCCCATTAGTTCA ATCCATCTCTGACATGTCTTTCTCATGACTGATGACCTGCAGAAATCCAA ACCTCTTCTCCCCAAAACAGCAGAGACTGCTATAAGACTGCTAAGGTCTA TTCAGGGTGTTCAGCACTTACATACTTTTTCACCCAACGTTAATTTGGTG GTGGGAAACTGAAACCCAATTTCAAATTGATGGTACAAAATTTTGAAGAA AAATCAACTCAAGTAGATGTTTTGGGCTATTCCAAAATGATATATATACA AGAGTATTGGCAAACTTTTTTCACCTGCCCTCCCCCTGAAATTTTGAATG ACAAATTATCCCGCCTTGAAATCTAGGATATACCATGAAGTCGGGTAACT TGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAATGACCTGTCTG GTCCTTAAAATACAAAGTTAAATCTAAAGAAAAATGGTAGAGTAAAGCTG GAAGCGAAACTGCGTAGTTCTTGTTGTTTTGAAATTTTGCTGCTTTGATT GGTTAGTCATTTGAGGGCTATGCATCATGTGAACCTCCACTGATGCAAGT TACCCAACTTCATGGTAGTATCCTGTCAGTCCTGTGGAAGTTGAAATTTT GTGAAAAAGGGGCTGGAAAACAACTATTGATGTCATTTTATGAAGAGGGC TCTCTAGAGAGAAAGCCCTGAGAAATTGCTGAGATATCATATTATTTCCA TGAATTATACACACATAGAAAAATATTGAACCCCCCTCCCCCTTAAAAAA AAAAAAAGGAAAAAAGTTTTGATTAGTAACTGGGCATAAAATGACCAATC AGACACGATTGCATATGCATACGAGTGATATAGGTTCACGTTCTGGAAAT CCAGCTTAAACAATGGCAGGCGAAATTTGAAATAACAGCATTGAAACTCA ACTTTTAAGAATTTTTTTTGTTGTATTACCATAGGCTGTTCCAGATAATT TTTCAAGCAGAACAAGTTAACTTTTTTCAAAATGAAAAGATATTTTCACC CAGCCAAAAATCAGATGACAGAACAGACTAGAAATGTAGATGTTGTTAGA AAAATGCAATGCCATTTTGTGTATAATAATTTTTAAAAATTCCAATGCCT CAAGGAGGCCTCCACAAGCGCTTTTCGGGATGACGTGATAGGGACTTTTT GCAGCGTGATTATGTGATTTAGAAATTTTTTCTTTGTGATTGCGTGATGA GAGGTCAAAACGTGTGATTTGAAAGATTTTAAGCTGCGTGATACGTGAAT TGGACTTTTTCAAAGGGATGCATGATTGTCCAATTTTCTTTTGCTGATTT GCCTGTTTGTGATTGCCTGAGGTTAAATAATTGTGTGATATCGTGATCAG AGTTACCGCTGGGGAGCCTCCTCAAGCATCAATGATAAAAATACTTAGTA TGTTCATTCACTAGTTACGATTCTGGGTGTTATTGTGTGATTCTGGAGTT TATTACTCAACATGACATCCTATGAAAGCTCTATTGGTCAAGCTCTATTG GTCAAGCTCAGTATTTAGTTTGAAGTACAGTTTTTATGGGAGGGGGTGTT AAGATAGGCAAAAAATGTCCAGGATTCATTTTATACAAACTATAGGGCCA AATCAAAAAACAATGAAACTTGTTGAGGAATAATTTTGTCAGTTGACCAA AAAAATTAAAAAAATTTTGTCATTTTTAAGGCGATTTATGGGATTTACCA AAGTTTCTTCTTTATAAAAAGTTCTCCAATTTCATTGTTTTGTTTTAAAC CTCATTAATATTAGATCAATTTTTCAAAGATATTTATCAAAATGGAAGAG AAACCTAAAATGAAAACATTGGGAGACGAGGCACCTTCTAAAGTGACACC AATGTCAGTCCTTGGACAAGATAAAGCATCTACATCATCTTTAAGGAATC CTGGCATGTCATCAAATCAATCTTTGGTTATGCAACTTCAGCACGCAACA CAAATGTCCAATATCACTGGAACTGCAACAACAGCGACTTGTATGTTTTT TAATTTTCTTTTTTTTTATCTTACTTGACAACCAAAATTAAAAATTAAAT TAAATTTAAGTTAAGTTTTCTAACCTATAATTTCAAAATGATATATACAA TCTATCTCTTTTTACTTTGAATTTCTAAAGAAAGAAATTTGGATAAAACT CAATTTTGTGCCTGTAATATTTCTCATTTTTGACCAGCATCATCAACACA ACCAGGGGCCACTGATACACAACAACAGCAACAACAACAGCAAACAAATA CTGCCACACCTTTGACAGAGTACACTATGTACCACCATTTACCATCTACA GTCATGAACCAACAAAATAATACAGGTATATATTGCAAAGGTTATACAGA GCTTTTTTTCCTGTGTTTTGTTAGTTCTTTGGTAAATATTCTGTTTTTTT TCTATTAGGAGAAATGAAGAAAGTTTTAACTCAGAATGTTTTAGTAATTC AAAGTTATTCAGCTTATTAATAATTAAGTTTAACAGCTATTCTCACTGTC AGAGTTTTGGCAGTGATTTATTTACTTTTGATTTTAAAAAGGCTCTTTCT ATAGTCTATGTTTAAAAAAAATGTTCCAAAATAAGAAGTTTAGACAGATT TGTCATGTTCAAAAGAGTAATTTTTTTTCCACCTGTAGATGATGGAGATG GTGCTGGTTCATACGATGACAGCCCACGTGAAATGAGAGAACAAGAATTA AGGGAACAAGACCGTTTTCTACCCATCGCCAATGTGGCTCGAATTATGAA ACGTGGTGTCCCTGAGACAGGAAAGGTTTGTTGCTAAAGTAATAACAGTT ATACAGTATGTTTGGGCATTTCTCTTTTTTTTTGGATTTTAGAAGGGTGT TTATACAGTACATTTATAAGTTATACAGTATGCTCATTTTACTTTATAAC CATTCGGGTCGAGGCTTATTAGTTTTTTCAAAACATTGTCAGTTTTGGCT GATTTTCATTCTCATTTCTATTTTTTCTCTCTGATTGTTGATATTCTTAC ATTATGGTTGAATGTGTATAAGTTAAAATATTCGTTTTCTTCTTCCCTGT TTCATTGATCCCATTTTCAAAACAAAATTTTAATGATGAAAATTCTCAGT AATAATACTTTGTTTATAAACGTTATTCTTATAAAAAAGAGAAAAAAATT TTTCGGAAAAATAAGCATATCACAAACATAATTTGAGCTTGATTCCAAAA TTTAGCTAGGCATAACTGAATATGTTTTCCAAAAAAAATATGCTGATAAA ACGAACATTTCTTTTGGAAAAAGGGCTTTAGTTTAAACTACAATTTGTGA TTTTTGTTTGTTACTTGTTACTCAACGTCAATAATACAATCATTTTAAAG AGGTGTCAAATAACTGGGAAGTTTTTCTGAAGTCATTTTATTCACACATA CTCAGTTTTTCTGACGTCGTTTAGGGGCTACTTAAAAGACTACACAATAA ACTGACGAACAATATTTGACAATATTGTTTTCGGACCGTAATGTACAAAG TAAATAACAGGTGCTCTTTTATAAAAAGGAATTTTCTTTCTGTGAATAAT CCCCCTATATTGAAGGAAAATTGCAAATCAAGCTGACAATGTATTGCGGA CACCTTTTCAATATATTGCCGGCACTCAGCAGTATATCATCAATATATTG CCTGACAATATATTGTGTAGTGTATGTAGCCCTTTAGAACAAAGTCCTTT GACGTTAGTGTCAGGCTTTATAGGTGTAATGTTCAGTCACATTTAAAAAT TTTATCACCCAATGCTGTCAGTCTGATCAAAAAGCTAACAACTAATCTTC TTTTCGATACTTTTTAGATTGCAAAAGATGCCAAGGAGTGTGTTCAAGAA TGTGTATCAGAGTTCATCAGTTTCATCACTAGCGAGTAAGTATCCTTTTC CTCTTATGTTTGAAAGAGTATAGCATAAATTCATAATAAATAATTTCATA GTTCGAAAGGGGGCACTACCTCCCCTACCCTAGGGGTTCTATCCCCTTTT AATATGTGGTGCTACCCCCCCCCCCCCTCAAATTTGGTGTACCGGGTGTG TCAAAAAAAACGCGCCTATTTTTCGATTTTTGGCGTACAAATTTCTATTG GACAAAGACAAATGAAATTTTTAGGGAAGATTTAAAATTTTATTTTTTAC CCTTGGTGGAAATTATACATTTGTATGTTCATTTAAAGTGACTTTATGAT AATTCCGCTGACTTAGGTCAATTTTTCATTTTCATAGTTAAATTTTCCCT TATGGAACAAGGTACTAAACTATGCTTCGTTTTTACGCTCTTATTTTGTC TCGCTACTACTCGCTACGGGCATCATTTTTTCATTTCATAGGTTAAGTTT TGTTCCAAGGTCAATATTTGATAGATTCTAGCTAGTTCCAACCAAGCCAT TTTTTAACGTCAATTGCGACGACAAAAAAATACTTTCAAATCGTCAATGG TGCAGAAATGAACCGATGTTATTACCTTTTGTACATCAAAATCCTTAGGT TTTCAGTTCAACTGTTTTGCAGAATGTTAAAGAAGCAGAACAGAGCTTGT ATAATATAAATATGATCGATTAAATAATGGAAATGTAACAAATTGATGAA AATTTGTTTTGCTAAGAAATGCTTTACATTGCCTTGAACACCTTGAGATG TTACGATAACACTGCGAAAAGCTTCCCAAAACCCCTTTAATTTGAAAACA AGATAAGTTTGACATTAAAAATGTTTGGTTTAGTAGGAATATTCCCTTCT ACATCTAGCTTAAACTTCAATTTCACTTTAAAACGGTTTTTACAGCTGAT AGGAAAGCTAGAATGTAAAGGTTTGACGTCTTCTTTGACGCCAATTAATT GCTACTGTAAACAACACAAAAAGTAGTGATCTTGCGAGAATATTCATAAC TTTAAATTCATTTGAGGTAACTCTGCCAAAATTTTAGAAATGTTTGGAAT TAGAATGTACAATACTCACAAAAAAATTCAAGCAGTTCAACTAAATAGAA AAATGTACGTCAAAGATTGTAAAATAGGGGCGTTTTTTTTTGACACACCC GGTATAACAAAGAAAGAAGATATTGCATTGTAAATAAAAAATCAAACTTC TAATTTGGGACAATTTGATACAAAAAAGCACCAACGCAGCTCAACCCTCC TTCTAAATGAACCCCCCCCCTATTTGAAAGCCGGGTACGAACAATGTATT TCTTTTATGTATAAAAAAGATGGTAGATTACTTCAAAAATTTGGAAAACT ACAGTCAATTAAGAAGACCTTGTACTATCAAATTACNAGCGATTCCAAAA AATCGAACAAAATTCCCCCTACTACTTGTACTATCAAATAGAAATCTAGT GGTGATTCCTGGGAAGATTTTCCAGTACCTTAAAGGAAGAAATTTTGGCG GGAATTTAATTTGGCGAATGGCCGAAAAAGTTTTTTAGAGGGAATTTAAT TTGGCGGATGGACGAAAAAACTAAATTTGGCGGGAATTTAATTTGGCGTT TGCTGAAAAGTTTATTCTTAAACAGCTACAAAAAAATGCAAAAACTCCTT AAAAGAGCATATTTTCAAAAAATTAAAAAAAAAGAAATTTTGGCGGGAAC TTAATTTGGCGGATTCTTGCCAAATCCGCCAAATTTTCTTTCCGCCAAAA TTTCTTCCTTTAAGGTAGATCGGTGCCAAAATAGGCTGCTACATCGGGAA CAATAATCTTTCAAAGGTCTATTGAGACCCATTATCTACACATTTGGCTA TGAAATAAATTTTTACAAAAAATAAAAAGATACTAAATCTTCAAAAAGTC CTCAAAATAATTCCTTAATTTTTTTGACTTTTCACAACCTAGAGCAAGCG AACGATGTCAACAAGAAAAACGAAAAACAATTAATGGAGAAGACATCTTG TTTGCAATGACAACCCTAGGTTTCGATAATTACGTTGAGCCTTTGAAAGT TTACTTGACCAAATATCGAGAGGTTTGTCTTTTTAATTTTTAAAGTTTTT TTTCATTCCAAAAGACACCAAAATCAGATTCTTACGTTTTACTTCTTATT TCTACGTTACGTTACTAACTTCACTTATCATCCGGTCTAAAAACATGTTG TCTAAAGTATTCGTAGCTTTTTACTAAGTTGATGAAATACAAGATTTAAC TAATATTTCTTTTCTCAAAAAGTGCTATCATTTCAGATTGTGCTATATAC TCGAATTTACAGTTTCCCTCTTCCTCTGTAAGGTTAGCGAGCTCTCAAAT TAAGGGTATTCTCAGCAATCTTAGCTAAATTCTTATGTTTTTTTTATGTT CTTATTTTAAATTTTACCAGAGTTTGAAAGGCGAGAAAGTTTTGAACGTT GCGGAATATGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGGATTATC GGCTATACAATATCAAATCGCTGGTAGCAACCTTCATCCGAGCATGGTTT CTGCTGATGGAACACCGTACGCTGCGTACACTCAAGCTCAAATTAATCAA GTCAATTCACAGGTAAGAATCCCGGATGATTTGATGTTTCATTTCAACTT ACTCTTGTGTGCTTANCCCCCCTGCTTATTCCCCCCCCCCCCCCCCCCTA CAATTAAGCACACAAGAGTAGTATTTCTAACACTCAAGGTTTGAAAATTA TAAAATAATCCTCTTTTGCCTATGCCATAAAGTTAAAGATAAAAAAACCC CGATCCATACAAGGAACATACGTGAGTAGATTTAGCCAAACCCAACCTTT TTCGACAAGCTGAGAATTGCAGGTTGAAGTAATGAAACTGCTGTTGTACT TTTCAGGAAAATTTTGGAAAAATGAAAGAAACCGTTGATATATTATTTTG TAACAAAACGTGTACGAAATTCTTATATAAATTTTGTTTCCAGATTCAAT TCAACACGTGACAAGAAAAATCTATGAACATGTAAATTTGGATCAATCAC AGAGAAGCTACCAGTTTGGGGATATTTGCAGTGAAGTTGCCACAAGGGGG TTGTTGTGTTTGATATGGATGGAGGATGGGATGGTTAACGTGTCAAAGCT TTACAACAAAAGCTAGTTTTAAGCAAGACTCGATTATCATCATAACAACT TTAATGTCTTCAGGCCCAAAAACAATCTGTTGTGTGTCCAATTGTCAACT TGACGTATGTCGGACATTTTTAGAAGGAAGTTAGTCCACCTAAAATATAG TATAGATCTTTGCGTCGCCTGGCAGAATCGCCCAAGTAACAAATATTTAT GCCCCCATAGATATTTCTAGGTTTTTCTCGGACGCTCCGGATTTTTTAAA CATCTCAAGATCCATATAGAATACAAATCAAAAGGTTCAAGCTGTCCGCA GTAATTTACATGCCCACCTATTTTGCGTTATTATTTTGCCACGTAAATGT GAGCAAATTTATTTATTTTTAAACTTATTCATCGTTTTTAGATGTTTTTT TTTTGTAAATAATCAAACTACAACGTACCTTACTTTAATAGTTAGAAGTG AAATACAGTTTATCAGTTAAATTCTAAGTGACTAACGTTTCTAACGTCGT TTTGCATAATATTCCACTTCCCGCTCTAAGATTCTCCTGACTTTCCGGGA TTTTTCCGCTATTTTACCCACGAGAACCGACGTGAGATTGGAAACGGTTT TTTAAAAATCTTTTGTTCACTTTTGAAACTGTCTAACTTTCCGAAGCTCA TTTTTCAACTACCCAGAGTCCTGGTCTTTTTCCGCTAGAAAAGTTGAATC TTATGCCAAATGACGGTAATAATATGATCTGTTATATTTTGTTTGGCTCA ATTACTGTACTAGTTCAGGCATTTCACAACTTTAGAACAATCACAATGAT CAAAATTTCGAAAGAAAGAGAACAAAGCCAAAGGTTTCTTACAGTGTAAA AATATATATATTGCAAATAATTTCAAAAAAATAACTATTATAATTCAATA TAATTAAAAAAAAAACTATTTTACATGTTACATTTAGATTTTCTCACAAT CGTTGTTTTTGAAATTGGCTAGGTCAACTGAAATATTTTAAAGCTTTAGC GGTCTTGTCTAAAATAAAGTCGGTACGATCTCAACAATTGTAATTTTCGG GTACTACTTTTGTCGGGTTGCACGAAAGCGACGTTTATGTAAGTTTCCAT TTGGGATCCCTGTTTAACATCTTCCAAATCCTTGCTTCTTCAAACAAAAG AAAAGAGGCCTTGTTCTTCCCCTCCAAATTCTTCGTCCTGCAAAACTGTT TGAATACGCATTCGCTGTTCCACTTTTTGATAGAGTTCAAATGATATTTC TTCTTCGGAAAGAAAGCTCAAAATTCCTTTGGCGCCCTGTAAATGGCA

Coding sequence (CDS) from alignment at scaffold_371:551935..560432-

>TCONS_00062758 ID=TCONS_00062758|Name=TCONS_00062758|organism=Clytia hemisphaerica|type=CDS|length=7488bp|location=Sequence derived from alignment at scaffold_371:551935..560432- (Clytia hemisphaerica)
ATTCAATTCAACACGTGAAGTTTGAAAGGCGAGAAAGTTTTGAACGTTGC
GGAATATGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGGATTATCGG
CTATACAATATCAAATCGCTGGTAGCAACCTTCATCCGAGCATGGTTTCT
GCTGATGGAACACCGTACGCTGCGTACACTCAAGCTCAAATTAATCAAGT
CAATTCACAGAGCAAGCGAACGATGTCAACAAGAAAAACGAAAAACAATT
AATGGAGAAGACATCTTGTTTGCAATGACAACCCTAGGTTTCGATAATTA
CGTTGAGCCTTTGAAAGTTTACTTGACCAAATATCGAGAGATTGCAAAAG
ATGCCAAGGAGTGTGTTCAAGAATGTGTATCAGAGTTCATCAGTTTCATC
ACTAGCGAATGATGGAGATGGTGCTGGTTCATACGATGACAGCCCACGTG
AAATGAGAGAACAAGAATTAAGGGAACAAGACCGTTTTCTACCCATCGCC
AATGTGGCTCGAATTATGAAACGTGGTGTCCCTGAGACAGGAAAGCATCA
TCAACACAACCAGGGGCCACTGATACACAACAACAGCAACAACAACAGCA
AACAAATACTGCCACACCTTTGACAGAGTACACTATGTACCACCATTTAC
CATCTACAGTCATGAACCAACAAAATAATACAGATATTTATCAAAATGGA
AGAGAAACCTAAAATGAAAACATTGGGAGACGAGGCACCTTCTAAAGTGA
CACCAATGTCAGTCCTTGGACAAGATAAAGCATCTACATCATCTTTAAGG
AATCCTGGCATGTCATCAAATCAATCTTTGGTTATGCAACTTCAGCACGC
AACACAAATGTCCAATATCACTGGAACTGCAACAACAGCGACTTATCAAC
TTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGTGGATTCAATTCAACAC
GTGAAGTTTGAAAGGCGAGAAAGTTTTGAACGTTGCGGAATATGCTCACC
ATGTAGATAGCGAAGAACAAGCCAGTGGATTATCGGCTATACAATATCAA
ATCGCTGGTAGCAACCTTCATCCGAGCATGGTTTCTGCTGATGGAACACC
GTACGCTGCGTACACTCAAGCTCAAATTAATCAAGTCAATTCACAGAGCA
AGCGAACGATGTCAACAAGAAAAACGAAAAACAATTAATGGAGAAGACAT
CTTGTTTGCAATGACAACCCTAGGTTTCGATAATTACGTTGAGCCTTTGA
AAGTTTACTTGACCAAATATCGAGAGATTGCAAAAGATGCCAAGGAGTGT
GTTCAAGAATGTGTATCAGAGTTCATCAGTTTCATCACTAGCGAATGATG
GAGATGGTGCTGGTTCATACGATGACAGCCCACGTGAAATGAGAGAACAA
GAATTAAGGGAACAAGACCGTTTTCTACCCATCGCCAATGTGGCTCGAAT
TATGAAACGTGGTGTCCCTGAGACAGGAAAGCATCATCAACACAACCAGG
GGCCACTGATACACAACAACAGCAACAACAACAGCAAACAAATACTGCCA
CACCTTTGACAGAGTACACTATGTACCACCATTTACCATCTACAGTCATG
AACCAACAAAATAATACAGATATTTATCAAAATGGAAGAGAAACCTAAAA
TGAAAACATTGGGAGACGAGGCACCTTCTAAAGTGACACCAATGTCAGTC
CTTGGACAAGATAAAGCATCTACATCATCTTTAAGGAATCCTGGCATGTC
ATCAAATCAATCTTTGGTTATGCAACTTCAGCACGCAACACAAATGTCCA
ATATCACTGGAACTGCAACAACAGCGACTTATCAACTTAGTGGATGAAAG
TGAGTGGCTGAGCAGGTTGTGGATTCAATTCAACACGTGAAGTTTGAAAG
GCGAGAAAGTTTTGAACGTTGCGGAATATGCTCACCATGTAGATAGCGAA
GAACAAGCCAGTGGATTATCGGCTATACAATATCAAATCGCTGGTAGCAA
CCTTCATCCGAGCATGGTTTCTGCTGATGGAACACCGTACGCTGCGTACA
CTCAAGCTCAAATTAATCAAGTCAATTCACAGAGCAAGCGAACGATGTCA
ACAAGAAAAACGAAAAACAATTAATGGAGAAGACATCTTGTTTGCAATGA
CAACCCTAGGTTTCGATAATTACGTTGAGCCTTTGAAAGTTTACTTGACC
AAATATCGAGAGATTGCAAAAGATGCCAAGGAGTGTGTTCAAGAATGTGT
ATCAGAGTTCATCAGTTTCATCACTAGCGAATGATGGAGATGGTGCTGGT
TCATACGATGACAGCCCACGTGAAATGAGAGAACAAGAATTAAGGGAACA
AGACCGTTTTCTACCCATCGCCAATGTGGCTCGAATTATGAAACGTGGTG
TCCCTGAGACAGGAAAGCATCATCAACACAACCAGGGGCCACTGATACAC
AACAACAGCAACAACAACAGCAAACAAATACTGCCACACCTTTGACAGAG
TACACTATGTACCACCATTTACCATCTACAGTCATGAACCAACAAAATAA
TACAGATATTTATCAAAATGGAAGAGAAACCTAAAATGAAAACATTGGGA
GACGAGGCACCTTCTAAAGTGACACCAATGTCAGTCCTTGGACAAGATAA
AGCATCTACATCATCTTTAAGGAATCCTGGCATGTCATCAAATCAATCTT
TGGTTATGCAACTTCAGCACGCAACACAAATGTCCAATATCACTGGAACT
GCAACAACAGCGACTTATCAACTTAGTGGATGAAAGTGAGTGGCTGAGCA
GGTTGTGGATTCAATTCAACACGTGAAGTTTGAAAGGCGAGAAAGTTTTG
AACGTTGCGGAATATGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGG
ATTATCGGCTATACAATATCAAATCGCTGGTAGCAACCTTCATCCGAGCA
TGGTTTCTGCTGATGGAACACCGTACGCTGCGTACACTCAAGCTCAAATT
AATCAAGTCAATTCACAGAGCAAGCGAACGATGTCAACAAGAAAAACGAA
AAACAATTAATGGAGAAGACATCTTGTTTGCAATGACAACCCTAGGTTTC
GATAATTACGTTGAGCCTTTGAAAGTTTACTTGACCAAATATCGAGAGAT
TGCAAAAGATGCCAAGGAGTGTGTTCAAGAATGTGTATCAGAGTTCATCA
GTTTCATCACTAGCGAATGATGGAGATGGTGCTGGTTCATACGATGACAG
CCCACGTGAAATGAGAGAACAAGAATTAAGGGAACAAGACCGTTTTCTAC
CCATCGCCAATGTGGCTCGAATTATGAAACGTGGTGTCCCTGAGACAGGA
AAGCATCATCAACACAACCAGGGGCCACTGATACACAACAACAGCAACAA
CAACAGCAAACAAATACTGCCACACCTTTGACAGAGTACACTATGTACCA
CCATTTACCATCTACAGTCATGAACCAACAAAATAATACAGATATTTATC
AAAATGGAAGAGAAACCTAAAATGAAAACATTGGGAGACGAGGCACCTTC
TAAAGTGACACCAATGTCAGTCCTTGGACAAGATAAAGCATCTACATCAT
CTTTAAGGAATCCTGGCATGTCATCAAATCAATCTTTGGTTATGCAACTT
CAGCACGCAACACAAATGTCCAATATCACTGGAACTGCAACAACAGCGAC
TTATCAACTTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGTGGATTCAA
TTCAACACGTGAAGTTTGAAAGGCGAGAAAGTTTTGAACGTTGCGGAATA
TGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGGATTATCGGCTATAC
AATATCAAATCGCTGGTAGCAACCTTCATCCGAGCATGGTTTCTGCTGAT
GGAACACCGTACGCTGCGTACACTCAAGCTCAAATTAATCAAGTCAATTC
ACAGAGCAAGCGAACGATGTCAACAAGAAAAACGAAAAACAATTAATGGA
GAAGACATCTTGTTTGCAATGACAACCCTAGGTTTCGATAATTACGTTGA
GCCTTTGAAAGTTTACTTGACCAAATATCGAGAGATTGCAAAAGATGCCA
AGGAGTGTGTTCAAGAATGTGTATCAGAGTTCATCAGTTTCATCACTAGC
GAATGATGGAGATGGTGCTGGTTCATACGATGACAGCCCACGTGAAATGA
GAGAACAAGAATTAAGGGAACAAGACCGTTTTCTACCCATCGCCAATGTG
GCTCGAATTATGAAACGTGGTGTCCCTGAGACAGGAAAGCATCATCAACA
CAACCAGGGGCCACTGATACACAACAACAGCAACAACAACAGCAAACAAA
TACTGCCACACCTTTGACAGAGTACACTATGTACCACCATTTACCATCTA
CAGTCATGAACCAACAAAATAATACAGATATTTATCAAAATGGAAGAGAA
ACCTAAAATGAAAACATTGGGAGACGAGGCACCTTCTAAAGTGACACCAA
TGTCAGTCCTTGGACAAGATAAAGCATCTACATCATCTTTAAGGAATCCT
GGCATGTCATCAAATCAATCTTTGGTTATGCAACTTCAGCACGCAACACA
AATGTCCAATATCACTGGAACTGCAACAACAGCGACTTATCAACTTAGTG
GATGAAAGTGAGTGGCTGAGCAGGTTGTGGATTCAATTCAACACGTGAAG
TTTGAAAGGCGAGAAAGTTTTGAACGTTGCGGAATATGCTCACCATGTAG
ATAGCGAAGAACAAGCCAGTGGATTATCGGCTATACAATATCAAATCGCT
GGTAGCAACCTTCATCCGAGCATGGTTTCTGCTGATGGAACACCGTACGC
TGCGTACACTCAAGCTCAAATTAATCAAGTCAATTCACAGAGCAAGCGAA
CGATGTCAACAAGAAAAACGAAAAACAATTAATGGAGAAGACATCTTGTT
TGCAATGACAACCCTAGGTTTCGATAATTACGTTGAGCCTTTGAAAGTTT
ACTTGACCAAATATCGAGAGATTGCAAAAGATGCCAAGGAGTGTGTTCAA
GAATGTGTATCAGAGTTCATCAGTTTCATCACTAGCGAATGATGGAGATG
GTGCTGGTTCATACGATGACAGCCCACGTGAAATGAGAGAACAAGAATTA
AGGGAACAAGACCGTTTTCTACCCATCGCCAATGTGGCTCGAATTATGAA
ACGTGGTGTCCCTGAGACAGGAAAGCATCATCAACACAACCAGGGGCCAC
TGATACACAACAACAGCAACAACAACAGCAAACAAATACTGCCACACCTT
TGACAGAGTACACTATGTACCACCATTTACCATCTACAGTCATGAACCAA
CAAAATAATACAGATATTTATCAAAATGGAAGAGAAACCTAAAATGAAAA
CATTGGGAGACGAGGCACCTTCTAAAGTGACACCAATGTCAGTCCTTGGA
CAAGATAAAGCATCTACATCATCTTTAAGGAATCCTGGCATGTCATCAAA
TCAATCTTTGGTTATGCAACTTCAGCACGCAACACAAATGTCCAATATCA
CTGGAACTGCAACAACAGCGACTTATCAACTTAGTGGATGAAAGTGAGTG
GCTGAGCAGGTTGTGGATTCAATTCAACACGTGAAGTTTGAAAGGCGAGA
AAGTTTTGAACGTTGCGGAATATGCTCACCATGTAGATAGCGAAGAACAA
GCCAGTGGATTATCGGCTATACAATATCAAATCGCTGGTAGCAACCTTCA
TCCGAGCATGGTTTCTGCTGATGGAACACCGTACGCTGCGTACACTCAAG
CTCAAATTAATCAAGTCAATTCACAGAGCAAGCGAACGATGTCAACAAGA
AAAACGAAAAACAATTAATGGAGAAGACATCTTGTTTGCAATGACAACCC
TAGGTTTCGATAATTACGTTGAGCCTTTGAAAGTTTACTTGACCAAATAT
CGAGAGATTGCAAAAGATGCCAAGGAGTGTGTTCAAGAATGTGTATCAGA
GTTCATCAGTTTCATCACTAGCGAATGATGGAGATGGTGCTGGTTCATAC
GATGACAGCCCACGTGAAATGAGAGAACAAGAATTAAGGGAACAAGACCG
TTTTCTACCCATCGCCAATGTGGCTCGAATTATGAAACGTGGTGTCCCTG
AGACAGGAAAGCATCATCAACACAACCAGGGGCCACTGATACACAACAAC
AGCAACAACAACAGCAAACAAATACTGCCACACCTTTGACAGAGTACACT
ATGTACCACCATTTACCATCTACAGTCATGAACCAACAAAATAATACAGA
TATTTATCAAAATGGAAGAGAAACCTAAAATGAAAACATTGGGAGACGAG
GCACCTTCTAAAGTGACACCAATGTCAGTCCTTGGACAAGATAAAGCATC
TACATCATCTTTAAGGAATCCTGGCATGTCATCAAATCAATCTTTGGTTA
TGCAACTTCAGCACGCAACACAAATGTCCAATATCACTGGAACTGCAACA
ACAGCGACTTATCAACTTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGT
GGATTCAATTCAACACGTGAAGTTTGAAAGGCGAGAAAGTTTTGAACGTT
GCGGAATATGCTCACCATGTAGATAGCGAAGAACAAGCCAGTGGATTATC
GGCTATACAATATCAAATCGCTGGTAGCAACCTTCATCCGAGCATGGTTT
CTGCTGATGGAACACCGTACGCTGCGTACACTCAAGCTCAAATTAATCAA
GTCAATTCACAGAGCAAGCGAACGATGTCAACAAGAAAAACGAAAAACAA
TTAATGGAGAAGACATCTTGTTTGCAATGACAACCCTAGGTTTCGATAAT
TACGTTGAGCCTTTGAAAGTTTACTTGACCAAATATCGAGAGATTGCAAA
AGATGCCAAGGAGTGTGTTCAAGAATGTGTATCAGAGTTCATCAGTTTCA
TCACTAGCGAATGATGGAGATGGTGCTGGTTCATACGATGACAGCCCACG
TGAAATGAGAGAACAAGAATTAAGGGAACAAGACCGTTTTCTACCCATCG
CCAATGTGGCTCGAATTATGAAACGTGGTGTCCCTGAGACAGGAAAGCAT
CATCAACACAACCAGGGGCCACTGATACACAACAACAGCAACAACAACAG
CAAACAAATACTGCCACACCTTTGACAGAGTACACTATGTACCACCATTT
ACCATCTACAGTCATGAACCAACAAAATAATACAGATATTTATCAAAATG
GAAGAGAAACCTAAAATGAAAACATTGGGAGACGAGGCACCTTCTAAAGT
GACACCAATGTCAGTCCTTGGACAAGATAAAGCATCTACATCATCTTTAA
GGAATCCTGGCATGTCATCAAATCAATCTTTGGTTATGCAACTTCAGCAC
GCAACACAAATGTCCAATATCACTGGAACTGCAACAACAGCGACTTATCA
ACTTAGTGGATGAAAGTGAGTGGCTGAGCAGGTTGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039309XLOC_039309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062758-exon-scaffold_371-1575043694:560391..560432TCONS_00062758-exon-scaffold_371-1575043694:560391..560432Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:558293..558503TCONS_00062758-exon-scaffold_371-1575043694:558293..558503Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:557958..558095TCONS_00062758-exon-scaffold_371-1575043694:557958..558095Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:557508..557644TCONS_00062758-exon-scaffold_371-1575043694:557508..557644Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:556398..556465TCONS_00062758-exon-scaffold_371-1575043694:556398..556465Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:554311..554440TCONS_00062758-exon-scaffold_371-1575043694:554311..554440Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:553771..553962TCONS_00062758-exon-scaffold_371-1575043694:553771..553962Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1575043694:551935..553389TCONS_00062758-exon-scaffold_371-1575043694:551935..553389Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:560391..560432TCONS_00062758-exon-scaffold_371-1510915933:560391..560432Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:558293..558503TCONS_00062758-exon-scaffold_371-1510915933:558293..558503Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:557958..558095TCONS_00062758-exon-scaffold_371-1510915933:557958..558095Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:557508..557644TCONS_00062758-exon-scaffold_371-1510915933:557508..557644Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:556398..556465TCONS_00062758-exon-scaffold_371-1510915933:556398..556465Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:554311..554440TCONS_00062758-exon-scaffold_371-1510915933:554311..554440Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:553771..553962TCONS_00062758-exon-scaffold_371-1510915933:553771..553962Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1510915933:551935..553389TCONS_00062758-exon-scaffold_371-1510915933:551935..553389Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:560391..560432TCONS_00062758-exon-scaffold_371-1491911889:560391..560432Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:558293..558503TCONS_00062758-exon-scaffold_371-1491911889:558293..558503Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:557958..558095TCONS_00062758-exon-scaffold_371-1491911889:557958..558095Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:557508..557644TCONS_00062758-exon-scaffold_371-1491911889:557508..557644Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:556398..556465TCONS_00062758-exon-scaffold_371-1491911889:556398..556465Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:554311..554440TCONS_00062758-exon-scaffold_371-1491911889:554311..554440Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:553771..553962TCONS_00062758-exon-scaffold_371-1491911889:553771..553962Clytia hemisphaericaexon
TCONS_00062758-exon-scaffold_371-1491911889:551935..553389TCONS_00062758-exon-scaffold_371-1491911889:551935..553389Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062758-proteinTCONS_00062758-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:551935..560432 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.8884 16.5173 12.1682 12.7448 31.7194 28.7613 25.8896 25.4878 15.323 15.9156 11.759 8.65442 8.98778 8.63675 8.18935 6.25755 18.1169 14.8645 7.74498 10.4946 13.1333 12.8743 11.2309 12.3964 15.8179 15.1095 4.54011 3.41625 5.41266 6.34558
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
Blast
BLAST of TCONS_00062758 vs. Swiss-Prot (Human)
Match: NFYB (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.030e-54
Identity = 102/168 (60.71%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  442 EQELREQDRFLPIANVARIMKRGVPETGKIAKDAKECVQECVSEFISFITSEASERCQQEKRKTINGEDILFAMTTLGFDNYVEPLKVYLTKYRESLKGEKVLNVAEYAHHVDSEEQASGLSAIQYQIAGSNLHPS-MVSADGTP--YAAYTQA--QINQVNSQIQFN 930
            ++  REQD +LPIANVARIMK  +P+TGKIAKDAKECVQECVSEFISFITSEASERC QEKRKTINGEDILFAM+TLGFD+YVEPLK+YL K+RE++KGEK +  A  A          GLS    + A +N  P+ +++ DG       YT +  QI+ V  QIQF+
Sbjct:   49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTA--------TDGLSEELTEEAFTNQLPAGLITTDGQQQNVMVYTTSYQQISGVQ-QIQFS 207          
The following BLAST results are available for this feature:
BLAST of TCONS_00062758 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYB3.030e-5460.71Nuclear transcription factor Y subunit beta OS=Hom... [more]
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