TCONS_00062758-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062758-protein
Unique NameTCONS_00062758-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062758-protein ID=TCONS_00062758-protein|Name=TCONS_00062758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
INLVDESEWLSRLWIFIKMEEKPKMKTLGDEAPSKVTPMSVLGQDKASTS
SLRNPGMSSNQSLVMQLQHATQMSNITGTATTATSSSTQPGATDTQQQQQ
QQQTNTATPLTEYTMYHHLPSTVMNQQNNTDDGDGAGSYDDSPREMREQE
LREQDRFLPIANVARIMKRGVPETGKIAKDAKECVQECVSEFISFITSEA
SERCQQEKRKTINGEDILFAMTTLGFDNYVEPLKVYLTKYRESLKGEKVL
NVAEYAHHVDSEEQASGLSAIQYQIAGSNLHPSMVSADGTPYAAYTQAQI
NQVNSQIQFNT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039309XLOC_039309Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062758TCONS_00062758Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR003956Transcrpt_fac_NFYB/HAP3_CS
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00615CCAATSUBUNTAcoord: 223..241
score: 42.94
coord: 204..222
score: 49.04
coord: 185..203
score: 52.87
NoneNo IPR availableGENE3D1.10.20.10coord: 149..246
e-value: 3.7E-37
score: 125.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..106
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 157..221
e-value: 1.2E-28
score: 99.1
IPR003956Transcription factor, NFYB/HAP3, conserved sitePROSITEPS00685NFYB_HAP3coord: 188..204
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 154..264

Blast
[Close]
BLAST of TCONS_00062758-protein vs. Swiss-Prot (Human)
Match: NFYB (Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 7.096e-60
Identity = 92/133 (69.17%), Postives = 105/133 (78.95%), Query Frame = 0 
Query:  139 YDDSPREMREQE--------LREQDRFLPIANVARIMKRGVPETGKIAKDAKECVQECVSEFISFITSEASERCQQEKRKTINGEDILFAMTTLGFDNYVEPLKVYLTKYRESLKGEKVLNVAEYAHHVDSEE 263
            +DD+   M + E         REQD +LPIANVARIMK  +P+TGKIAKDAKECVQECVSEFISFITSEASERC QEKRKTINGEDILFAM+TLGFD+YVEPLK+YL K+RE++KGEK +  A  A    SEE
Sbjct:   32 HDDTEDSMNDHEDTNGSKESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEE 164
The following BLAST results are available for this feature:
BLAST of TCONS_00062758-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFYB7.096e-6069.17Nuclear transcription factor Y subunit beta OS=Hom... [more]
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