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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062683 ID=TCONS_00062683|Name=TCONS_00062683|organism=Clytia hemisphaerica|type=transcript|length=884bp
tatagacaGACAGGAATGGTCACAGCGACCgaatcattgaaaaaatttca
acgtAAACAAACCGAAGAAAACCGTCCTTCCTGTCAAGGGTAAATCAATC
ATACTGGAGGTTCAGTGTGTTCGTGGAAAATTGGTCAAGTGTTTACTGCC
ATTTGCTAAATTCGTGCTACCATGGCCTCTTgtgtttttagcaatttttg
cacCCAGAGTTTGTTCCTCTGACACAAGTTCTGATAAGGAGGTGAGcgaa
gaaaagaagagaaagtGTCATTTTCTAGACGAACCcatcagaaaaaaatc
gtgccaGTCCACATCACAGGAACTCCAAATTTGTCGACCTTCGAGTGATG
GTTTCAACCTGCTGAGTTTTGACTTTGAGAATGACGAAGTGCTCTTTGAA
GAAATAGCTTTAAAGCTTTGCCAAATTGGTGATGACATGATGGAGAAATA
CAATGCGAAAAGTTGGTACCAGTTTTGGTGATCGAATTAATCTTTTTAGA
TGCAAGTATAGTTAGAGTTTTTGTATATAGTTTATTTAGAGGAAGAGgta
tattttaaaagtttattttatcGAACTAGCTAAATTTGAAATAtgaattt
tatcaattttgtaacatatttgaattatttttgtccTATGATACTCcatg
aattttattttgcaaCTCTCTGTTTGTCTTAtggatttataaaaaaataa
agggAAACATTTTTGCTTTCAAGCTTTTGATTTCTATGAAATTACACATT
TTAAATTGTGTTTTTAGGTCTTTTTTAGGATCTGCACCAATCGAAGtaac
gaaagtgccaaatgattttcaaattttgaaatttaaaatgaagtaaaaat
tttcaaatttcaaaatttgaaaaatgaaaaatgg Run BLAST on NCBI transcript from alignment at scaffold_371:422720..424129+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062683 ID=TCONS_00062683|Name=TCONS_00062683|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at scaffold_371:422720..424129+ (Clytia hemisphaerica)
tatagacaGACAGGAATGGTCACAGCGACCgaatcattgaaaaaatttca
acgtAAACAAACCGAAGAAAACCGTCCTTCCTGTCAAGGGTATGTGATTG
TTTGCGTTCTATACAGGGAACttttaaacaaatattttgccaaattcCTG
TTTCGTCTTGCAAGGGAATTTTCTGTCTAAAGTCAAATGGATTTTCCCTG
TCTAAATCCCTACTCTATATAAAGTGAATCTCGTACTGCTTGGCTTTGTC
AGTCATCTTCTACAGGAAACTTAATACGGTGTTGAACACAAATATTCCAA
AACATCTTGCTTAAGATGGCTGACTTCTTAGTCTATTTATTAAATGGGAT
TCTTTCACAATCTGGCTCAGCTAAAATCGAGAGCTGGAAAGAAACAAGCT
TATTTTGTAAGTTAAtcatttttaaatagtttttatgCTTTTTTTTGGAG
ACTCTCAGTGCACTCTGTAAAAATATGATAGGCTAGCCAAAGGCGgacat
tgatttcaaagcccgaGCTTCAAACTCGCGAAATCCTTAGCCTTTATGGC
ATGGTACTTTTCCGGTCATATGATAAGTTCATGGTCAAGTAATATATTCA
TTTCTTTGTCTTCAGGTAAATCAATCATACTGGAGGTTCAGTGTGTTCGT
GGAAAATTGGTCAAGTGTTTACTGCCATTTGCTAAATTCGTGCTACCATG
GCCTCTTgtgtttttagcaatttttgcacCCAGAGTTTGTTCCTCTGACA
CAAGTTCTGATAAGGAGGTGAGcgaagaaaagaagagaaagtGTCATTTT
CTAGACGAACCcatcagaaaaaaatcgtgccaGTCCACATCACAGGAACT
CCAAATTTGTCGACCTTCGAGTGATGGTTTCAACCTGCTGAGTTTTGACT
TTGAGAATGACGAAGTGCTCTTTGAAGAAATAGCTTTAAAGCTTTGCCAA
ATTGGTGATGACATGATGGAGAAATACAATGCGAAAAGTTGGTACCAGTT
TTGGTGATCGAATTAATCTTTTTAGATGCAAGTATAGTTAGAGTTTTTGT
ATATAGTTTATTTAGAGGAAGAGgtatattttaaaagtttattttatcGA
ACTAGCTAAATTTGAAATAtgaattttatcaattttgtaacatatttgaa
ttatttttgtccTATGATACTCcatgaattttattttgcaaCTCTCTGTT
TGTCTTAtggatttataaaaaaataaagggAAACATTTTTGCTTTCAAGC
TTTTGATTTCTATGAAATTACACATTTTAAATTGTGTTTTTAGGTCTTTT
TTAGGATCTGCACCAATCGAAGtaacgaaagtgccaaatgattttcaaat
tttgaaatttaaaatgaagtaaaaattttcaaatttcaaaatttgaaaaa
tgaaaaatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062683-exon-scaffold_371-1491911889:422720..422808 | TCONS_00062683-exon-scaffold_371-1491911889:422720..422808 | Clytia hemisphaerica | exon |
| TCONS_00062683-exon-scaffold_371-1510915933:422720..422808 | TCONS_00062683-exon-scaffold_371-1510915933:422720..422808 | Clytia hemisphaerica | exon |
| TCONS_00062683-exon-scaffold_371-1575043694:422720..422808 | TCONS_00062683-exon-scaffold_371-1575043694:422720..422808 | Clytia hemisphaerica | exon |
| TCONS_00062683-exon-scaffold_371-1491911889:423335..424129 | TCONS_00062683-exon-scaffold_371-1491911889:423335..424129 | Clytia hemisphaerica | exon |
| TCONS_00062683-exon-scaffold_371-1510915933:423335..424129 | TCONS_00062683-exon-scaffold_371-1510915933:423335..424129 | Clytia hemisphaerica | exon |
| TCONS_00062683-exon-scaffold_371-1575043694:423335..424129 | TCONS_00062683-exon-scaffold_371-1575043694:423335..424129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:422720..424129 + |
Blast
The following BLAST results are available for this feature:
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