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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=transcript|length=2533bp
AAGAATGATTGAGAAATTAGTCTCAGTTCCTATTCCTATGCTGTAATCAA
TagagaaaatattgaatttgtaCGCGATAAAATAAAAAGGATTGATATAG
AAGAACCAACCAGCCAAGAGAACCAAACgaaaagaaaacctttttttcaC
TTAACAGTGTAAATGAACAAagcaaagaaataaaaatattagagGAAGAA
ATCGTTATAATAAAAATAGCAAATACGTGGAAAATATCATGAATCAggaa
ttcaatttttcttgaaacCTGCTATCGAAACGTTCTACTTCAAATAGATT
TTTATGTCGACGTAAAATGATGAAATCGATTTGATTGGTCATCAGAAGTT
GAACTAGACCGGAGTTAAACCATCAAGAATGGCCGAGCAACATTTGGAGG
AATATTTTTGATTGATTGGAAAATCAAAGAGTTTTTTATCTTgaataaaa
caaatttattgGGACGATTAAAATACATCTGGTATAAATTCAAAGAACCA
TATTTGACTGAAATCTTTCATTTGTACGTTTGAGAACTTTTGGTCGAGAA
CCCTTCGATTAaacgaaccaaatcgaacgcaatcgaaagTTAATTAACCA
ATCACACAATAAGAAAAACATAAGAGATTGCACTACACGTTAAAACacgg
tacacgctttttttttattttattttataagaatagtgtactttggttga
gggtaagcattattcttattttttattgttctaaacaataggcctattgt
tttaaacccgaaatctcaccctgatattcttatagaagttattcttataa
aaaaaaagcgtgtagtactTTTCAAACTCTTGTTGACATTACATTATTCC
CAACACTGTTTaattcatcaaaacaaacatggcgTTTATGGCTGGTAGTG
TTAAAAGTTTAATCGAGTTCAAGATTAAAACTCGCCACGATGGATACTCA
GATCAAGTCTCCCGAATCATGGTCACTAAACTTTTCATAGTGGCAAGTCT
TATAATGGGTGTTGACTGGTTCCACGATAACCTCTCATGTGTCCATCCAA
AAGATATCGATGTTGGAGGCGAGTATATAGAAAGTGCTTGTTGGATCAAA
GGATTTTACATATATAGAGAACATGAGCCACATCACCGGGAGTCCGGATA
TTACGGGATACCGAACTCGTTATCGATGGACGGGATGCGCCCCGCTTCCG
ATCGATTTGATGACGATGAATTTTGTAGCACTAAGGAAAGTAACAATAAC
AAACGGAAATATTATAAGACACAATCGACTTGTCAGAAAATGGATAAATA
TTATTTTGTTCACTACCAATGGATGCCCTTCTACATCTTCAGTATGTCGG
CTTTATTTTATATGCCGTATATTTTGTTCCGTATGGTCAATACTGATGTC
ATCAGTTTGAAGTTGAACATGAAAGACGACGAGGTCACGTGTGACGATAT
CGTGgaattttatttcaatcatGACGTCAATCCCGTCTACAAAATGCGTT
ACCGCTTCTTCATGAATTTCGTGGTCAAAGTCATTTACCTTATCACGAAC
ATCTCTGCTTTTTACATCCTTGACGAGTTATTGGATTACCATTTCCAGTC
ATACGGTCTCGATTGGATTAATTGGTCTTACCAGAACACGACATTGCGTT
ATGACTACGAGAGGAGATTGGCGCCGACGCCCGGTAATCGTATGTTACCT
TCATTCGGTATGTGTGATCTTGTCATTTCACGCTTAGACGTCAAAGTCGA
TAGCGTTGATAAGATAACCGTTTTATGTGAAATCTCATCCAATATTTTAT
ACCAATATGTATTCGTGGCACTCTGGtatgttttgattatttcgatcaGC
GTGGCTGCCCTCGGAGTCATTGTCTATCTTCAACAGCACATCCACGTCGc
gtttttcatcaaaaacgAGCGTTCTTCAAAATACGTGTATAGACTTTTAA
CATTCCGCGAATGTCAATATTTAGAATTTATCCGTAACCGTGATTTGACT
ATGTATGGTATTATCGTTAAAAAGTTACGTCAAAAGCATTCATTACCGTT
ACCGAAACTACGTAAAATGGCGAACAAGGAAGGAGGAGCGACGGCACCGA
TTTTACCGAATGGGAATACGGTGAAAGTGAAACATCATTTGAAACATTTG
GATTCTATGGAAGACGGAGATTCGTCGTAAAGATCGTGTGTCACGTGTGT
TGTTTAAACGGTTTGTGATGTGGTGTTTGAATGTAGTCACGTGAGGAAGA
ATTATCTAAAGATTGGAGTTAGTGTTTGTGTGGAAATGACAATGTTGAAA
ATATCTTgtgaaaggtttttttttaattgttaaaTGGGTCGTGGCAAATG
ATGGACGGGTGCGCTGTAGGCATTACGCGTAAAGATTTTTGATCCGACAA
TTCAGTGAAATTGTCTACGTAAACTGGAATTTAAAACCTTATCAAAGCTG
ATTCAAACTATGCTTCAATTGGTGCAGCTCCCATGACTCTTAGAAAGTAA
CTTTCTCTATCAGATAAGGATCCtaaatccggg Run BLAST on NCBI protein sequence of TCONS_00062505-protein >TCONS_00062505-protein ID=TCONS_00062505-protein|Name=TCONS_00062505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
MAFMAGSVKSLIEFKIKTRHDGYSDQVSRIMVTKLFIVASLIMGVDWFHD
NLSCVHPKDIDVGGEYIESACWIKGFYIYREHEPHHRESGYYGIPNSLSM
DGMRPASDRFDDDEFCSTKESNNNKRKYYKTQSTCQKMDKYYFVHYQWMP
FYIFSMSALFYMPYILFRMVNTDVISLKLNMKDDEVTCDDIVEFYFNHDV
NPVYKMRYRFFMNFVVKVIYLITNISAFYILDELLDYHFQSYGLDWINWS
YQNTTLRYDYERRLAPTPGNRMLPSFGMCDLVISRLDVKVDSVDKITVLC
EISSNILYQYVFVALWYVLIISISVAALGVIVYLQQHIHVAFFIKNERSS
KYVYRLLTFRECQYLEFIRNRDLTMYGIIVKKLRQKHSLPLPKLRKMANK
EGGATAPILPNGNTVKVKHHLKHLDSMEDGDSS Run BLAST on NCBI transcript from alignment at scaffold_367:73997..77350+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=transcript|length=3354bp|location=Sequence derived from alignment at scaffold_367:73997..77350+ (Clytia hemisphaerica)
AAGAATGATTGAGAAATTAGTCTCAGTTCCTATTCCTATGCTGTAATCAA
TagagaaaatattgaatttgtaCGCGATAAAATAAAAAGGATTGATATAG
AAGAACCAACCAGCCAAGAGAACCAAACgaaaagaaaacctttttttcaC
TTAACAGTGTAAATGAACAAagcaaagaaataaaaatattagagGAAGAA
ATCGTTATAATAAAAATAGCAAATACGTGGAAAATATCATGAATCAggaa
ttcaatttttcttgaaacCTGCTATCGAAACGTTCTACTTCAAATAGATT
TTTATGTCGACGTAAAATGATGAAATCGATTTGATTGGTCATCAGAAGTT
GAACTAGACCGGAGTTAAACCATCAAGAATGGCCGAGCAACATTTGGAGG
AATATTTTTGATTGATTGGAAAATCAAAGAGTTTTTTATCTTgaataaaa
caaatttattgGGACGATTAAAATACATCTGGTATAAATTCAAAGAACCA
TATTTGACTGAAATCTTTCATTTGTACGTTTGAGAACTTTTGGTCGAGAA
CCCTTCGATTAaacgaaccaaatcgaacgcaatcgaaagTTAATTAACCA
ATCACACAATAAGAAAAACATAAGAGATTGCACTACACGTTAAAACacgg
tacacgctttttttttattttattttataagaatagtgtactttggttga
gggtaagcattattcttattttttattgttctaaacaataggcctattgt
tttaaacccgaaatctcaccctgatattcttatagaagttattcttataa
aaaaaaagcgtgtagtactTTTCAAACTCTTGTTGACATTACATTATTCC
CAACACTGTTTaattcatcaaaacaaacatggcgTTTATGGCTGGTAGTG
TTAAAAGTTTAATCGAGTTCAAGATTAAAACTCGCCACGATGGATACTCA
GATCAAGTCTCCCGAATCATGGTCACTAAACTTTTCATAGTGGCAAGTCT
TATAATGGGTGTTGACTGGTTCCACGATAACCTCTCATGTGTCCATCCAA
AAGATATCGATGTTGGAGGCGAGTATATAGAAAGTGCTTGTTGGATCAAA
GGATTTTACATATATAGAGAACATGAGCCACATCACCGGGAGTCCGGATA
TTACGGGATACCGAACTCGTTATCGATGGACGGGATGCGCCCCGCTTCCG
ATCGATTTGATGACGATGAATTTTGTAGCACTAAGGAAAGTAACAATAAC
AAACGGAAATATTATAAGACACAATCGACTTGTCAGAAAATGGATAAATA
TTATTTTGTTCACTACCAATGGATGCCCTTCTACATCTTCAGTATGTCGG
CTTTATTTTATATGCCGTATATTTTGTTCCGTATGGTCAATACTGATGTC
ATCAGTTTGAAGTTGAACATGAAAGACGACGAGgtgggtgtttttttttc
tcgtagGGGCTAGGCGAGATGGGTCCCGAGTATGTAGGATACGAGTTTTA
AAGACTGAAAATCGACGAAAATCGACGAAATATTTTTAGGTAAACTTTTG
CAAAGGGCCTCAAAAACGAAAAGAATCTTTCTCTTAAATAGTCGGTTTTT
GTTTATCACCCCGTTTTCTtgtaaacctagtaccccctggTCCGTAGTAT
GCGGCAACTATATTGGAAAAAGGCCGCGTCCGTACCTTCTGATTCCCACT
AGCTTCGTCTAATTCTGGTTTATATACAACTGCCATATTGTAAGGCTAAA
TGTAAATGTGCAAGTCACTGCAGTTTAAAAGCGACCTATTATTTTTGGGG
GTATTATTTTTGCGAGGTGATGGGAAGGTTTGAGCCAAAGTTCGAacatc
gaccctttgagagactgaatttcgaaaattttgccCTATTTTTGACGTTT
CTAccaccctttgagagactttttttcccaatttttattcaaaatttcaa
attttggtccAGACTATGAAATTTTATAACCCTTTGAGGGACATGATACT
GTTAATATTTCGTGGTTTTGTGACCCTTTCAGACTAATTTGCTATATTAT
AGTTTTATaccctttcagagacttttGAGGATGTAAAAAGGTGTCGGGTA
TGTGAACCCTTTTGGGTTCACATACCCGACAcctattttgcactccccct
TCCCGGGGATAGTGGCACTTGTCAGGTTTTAGGAATTTAAAATAACAGAT
CTCCCGAATTTTTAAAGAATCCGGCTTATTAAAATCCTAAATCTCAATCA
TCAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACGTCA
ATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTCAAA
GTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGAGTT
ATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGTCTT
ACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCGACG
CCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCATTTC
ACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTATGTG
AAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGGtat
gttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTATCT
TCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTTCAA
AATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAATTT
ATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTTACG
TCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACAAGG
AAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAAGTG
AAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTCGTA
AAGATCGTGTGTCACGTGTGTTGTTTAAACGGTTTGTGATGTGGTGTTTG
AATGTAGTCACGTGAGGAAGAATTATCTAAAGATTGGAGTTAGTGTTTGT
GTGGAAATGACAATGTTGAAAATATCTTgtgaaaggtttttttttaattg
ttaaaTGGGTCGTGGCAAATGATGGACGGGTGCGCTGTAGGCATTACGCG
TAAAGATTTTTGATCCGACAATTCAGTGAAATTGTCTACGTAAACTGGAA
TTTAAAACCTTATCAAAGCTGATTCAAACTATGCTTCAATTGGTGCAGCT
CCCATGACTCTTAGAAAGTAACTTTCTCTATCAGATAAGGATCCtaaatc
cggg Coding sequence (CDS) from alignment at scaffold_367:73997..77350+ >TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_367:73997..77350+ (Clytia hemisphaerica)
atggcgTTTATGGCTGGTAGTGTTAAAAGTTTAATCGAGTTCAAGATTAA
AACTCGCCACGATGGATACTCAGATCAAGTCTCCCGAATCATGGTCACTA
AACTTTTCATAGTGGCAAGTCTTATAATGGGTGTTGACTGGTTCCACGAT
AACCTCTCATGTGTCCATCCAAAAGATATCGATGTTGGAGGCGAGTATAT
AGAAAGTGCTTGTTGGATCAAAGGATTTTACATATATAGAGAACATGAGC
CACATCACCGGGAGTCCGGATATTACGGGATACCGAACTCGTTATCGATG
GACGGGATGCGCCCCGCTTCCGATCGATTTGATGACGATGAATTTTGTAG
CACTAAGGAAAGTAACAATAACAAACGGAAATATTATAAGACACAATCGA
CTTGTCAGAAAATGGATAAATATTATTTTGTTCACTACCAATGGATGCCC
TTCTACATCTTCAGTATGTCGGCTTTATTTTATATGCCGTATATTTTGTT
CCGTATGGTCAATACTGATGTCATCAGTTTGAAGTTGAACATGAAAGACG
ACGAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACGTC
AATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTCAA
AGTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGAGT
TATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGTCT
TACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCGAC
GCCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCATTT
CACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTATGT
GAAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGGta
tgttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTATC
TTCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTTCA
AAATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAATT
TATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTTAC
GTCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACAAG
GAAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAAGT
GAAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTCGT
AAatggcgTTTATGGCTGGTAGTGTTAAAAGTTTAATCGAGTTCAAGATT
AAAACTCGCCACGATGGATACTCAGATCAAGTCTCCCGAATCATGGTCAC
TAAACTTTTCATAGTGGCAAGTCTTATAATGGGTGTTGACTGGTTCCACG
ATAACCTCTCATGTGTCCATCCAAAAGATATCGATGTTGGAGGCGAGTAT
ATAGAAAGTGCTTGTTGGATCAAAGGATTTTACATATATAGAGAACATGA
GCCACATCACCGGGAGTCCGGATATTACGGGATACCGAACTCGTTATCGA
TGGACGGGATGCGCCCCGCTTCCGATCGATTTGATGACGATGAATTTTGT
AGCACTAAGGAAAGTAACAATAACAAACGGAAATATTATAAGACACAATC
GACTTGTCAGAAAATGGATAAATATTATTTTGTTCACTACCAATGGATGC
CCTTCTACATCTTCAGTATGTCGGCTTTATTTTATATGCCGTATATTTTG
TTCCGTATGGTCAATACTGATGTCATCAGTTTGAAGTTGAACATGAAAGA
CGACGAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACG
TCAATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTC
AAAGTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGA
GTTATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGT
CTTACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCG
ACGCCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCAT
TTCACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTAT
GTGAAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGG
tatgttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTA
TCTTCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTT
CAAAATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAA
TTTATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTT
ACGTCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACA
AGGAAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAA
GTGAAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTC
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062505-exon-scaffold_367-1491911889:73997..75429 | TCONS_00062505-exon-scaffold_367-1491911889:73997..75429 | Clytia hemisphaerica | exon |
| TCONS_00062505-exon-scaffold_367-1510915933:73997..75429 | TCONS_00062505-exon-scaffold_367-1510915933:73997..75429 | Clytia hemisphaerica | exon |
| TCONS_00062505-exon-scaffold_367-1575043694:73997..75429 | TCONS_00062505-exon-scaffold_367-1575043694:73997..75429 | Clytia hemisphaerica | exon |
| TCONS_00062505-exon-scaffold_367-1491911889:76251..77350 | TCONS_00062505-exon-scaffold_367-1491911889:76251..77350 | Clytia hemisphaerica | exon |
| TCONS_00062505-exon-scaffold_367-1510915933:76251..77350 | TCONS_00062505-exon-scaffold_367-1510915933:76251..77350 | Clytia hemisphaerica | exon |
| TCONS_00062505-exon-scaffold_367-1575043694:76251..77350 | TCONS_00062505-exon-scaffold_367-1575043694:76251..77350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:73997..77350 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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