TCONS_00062505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062505
Unique NameTCONS_00062505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=transcript|length=2533bp
AAGAATGATTGAGAAATTAGTCTCAGTTCCTATTCCTATGCTGTAATCAA
TagagaaaatattgaatttgtaCGCGATAAAATAAAAAGGATTGATATAG
AAGAACCAACCAGCCAAGAGAACCAAACgaaaagaaaacctttttttcaC
TTAACAGTGTAAATGAACAAagcaaagaaataaaaatattagagGAAGAA
ATCGTTATAATAAAAATAGCAAATACGTGGAAAATATCATGAATCAggaa
ttcaatttttcttgaaacCTGCTATCGAAACGTTCTACTTCAAATAGATT
TTTATGTCGACGTAAAATGATGAAATCGATTTGATTGGTCATCAGAAGTT
GAACTAGACCGGAGTTAAACCATCAAGAATGGCCGAGCAACATTTGGAGG
AATATTTTTGATTGATTGGAAAATCAAAGAGTTTTTTATCTTgaataaaa
caaatttattgGGACGATTAAAATACATCTGGTATAAATTCAAAGAACCA
TATTTGACTGAAATCTTTCATTTGTACGTTTGAGAACTTTTGGTCGAGAA
CCCTTCGATTAaacgaaccaaatcgaacgcaatcgaaagTTAATTAACCA
ATCACACAATAAGAAAAACATAAGAGATTGCACTACACGTTAAAACacgg
tacacgctttttttttattttattttataagaatagtgtactttggttga
gggtaagcattattcttattttttattgttctaaacaataggcctattgt
tttaaacccgaaatctcaccctgatattcttatagaagttattcttataa
aaaaaaagcgtgtagtactTTTCAAACTCTTGTTGACATTACATTATTCC
CAACACTGTTTaattcatcaaaacaaacatggcgTTTATGGCTGGTAGTG
TTAAAAGTTTAATCGAGTTCAAGATTAAAACTCGCCACGATGGATACTCA
GATCAAGTCTCCCGAATCATGGTCACTAAACTTTTCATAGTGGCAAGTCT
TATAATGGGTGTTGACTGGTTCCACGATAACCTCTCATGTGTCCATCCAA
AAGATATCGATGTTGGAGGCGAGTATATAGAAAGTGCTTGTTGGATCAAA
GGATTTTACATATATAGAGAACATGAGCCACATCACCGGGAGTCCGGATA
TTACGGGATACCGAACTCGTTATCGATGGACGGGATGCGCCCCGCTTCCG
ATCGATTTGATGACGATGAATTTTGTAGCACTAAGGAAAGTAACAATAAC
AAACGGAAATATTATAAGACACAATCGACTTGTCAGAAAATGGATAAATA
TTATTTTGTTCACTACCAATGGATGCCCTTCTACATCTTCAGTATGTCGG
CTTTATTTTATATGCCGTATATTTTGTTCCGTATGGTCAATACTGATGTC
ATCAGTTTGAAGTTGAACATGAAAGACGACGAGGTCACGTGTGACGATAT
CGTGgaattttatttcaatcatGACGTCAATCCCGTCTACAAAATGCGTT
ACCGCTTCTTCATGAATTTCGTGGTCAAAGTCATTTACCTTATCACGAAC
ATCTCTGCTTTTTACATCCTTGACGAGTTATTGGATTACCATTTCCAGTC
ATACGGTCTCGATTGGATTAATTGGTCTTACCAGAACACGACATTGCGTT
ATGACTACGAGAGGAGATTGGCGCCGACGCCCGGTAATCGTATGTTACCT
TCATTCGGTATGTGTGATCTTGTCATTTCACGCTTAGACGTCAAAGTCGA
TAGCGTTGATAAGATAACCGTTTTATGTGAAATCTCATCCAATATTTTAT
ACCAATATGTATTCGTGGCACTCTGGtatgttttgattatttcgatcaGC
GTGGCTGCCCTCGGAGTCATTGTCTATCTTCAACAGCACATCCACGTCGc
gtttttcatcaaaaacgAGCGTTCTTCAAAATACGTGTATAGACTTTTAA
CATTCCGCGAATGTCAATATTTAGAATTTATCCGTAACCGTGATTTGACT
ATGTATGGTATTATCGTTAAAAAGTTACGTCAAAAGCATTCATTACCGTT
ACCGAAACTACGTAAAATGGCGAACAAGGAAGGAGGAGCGACGGCACCGA
TTTTACCGAATGGGAATACGGTGAAAGTGAAACATCATTTGAAACATTTG
GATTCTATGGAAGACGGAGATTCGTCGTAAAGATCGTGTGTCACGTGTGT
TGTTTAAACGGTTTGTGATGTGGTGTTTGAATGTAGTCACGTGAGGAAGA
ATTATCTAAAGATTGGAGTTAGTGTTTGTGTGGAAATGACAATGTTGAAA
ATATCTTgtgaaaggtttttttttaattgttaaaTGGGTCGTGGCAAATG
ATGGACGGGTGCGCTGTAGGCATTACGCGTAAAGATTTTTGATCCGACAA
TTCAGTGAAATTGTCTACGTAAACTGGAATTTAAAACCTTATCAAAGCTG
ATTCAAACTATGCTTCAATTGGTGCAGCTCCCATGACTCTTAGAAAGTAA
CTTTCTCTATCAGATAAGGATCCtaaatccggg
Run BLAST on NCBI

protein sequence of TCONS_00062505-protein

>TCONS_00062505-protein ID=TCONS_00062505-protein|Name=TCONS_00062505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=433bp
MAFMAGSVKSLIEFKIKTRHDGYSDQVSRIMVTKLFIVASLIMGVDWFHD
NLSCVHPKDIDVGGEYIESACWIKGFYIYREHEPHHRESGYYGIPNSLSM
DGMRPASDRFDDDEFCSTKESNNNKRKYYKTQSTCQKMDKYYFVHYQWMP
FYIFSMSALFYMPYILFRMVNTDVISLKLNMKDDEVTCDDIVEFYFNHDV
NPVYKMRYRFFMNFVVKVIYLITNISAFYILDELLDYHFQSYGLDWINWS
YQNTTLRYDYERRLAPTPGNRMLPSFGMCDLVISRLDVKVDSVDKITVLC
EISSNILYQYVFVALWYVLIISISVAALGVIVYLQQHIHVAFFIKNERSS
KYVYRLLTFRECQYLEFIRNRDLTMYGIIVKKLRQKHSLPLPKLRKMANK
EGGATAPILPNGNTVKVKHHLKHLDSMEDGDSS
Run BLAST on NCBI

transcript from alignment at scaffold_367:73997..77350+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=transcript|length=3354bp|location=Sequence derived from alignment at scaffold_367:73997..77350+ (Clytia hemisphaerica)
AAGAATGATTGAGAAATTAGTCTCAGTTCCTATTCCTATGCTGTAATCAA TagagaaaatattgaatttgtaCGCGATAAAATAAAAAGGATTGATATAG AAGAACCAACCAGCCAAGAGAACCAAACgaaaagaaaacctttttttcaC TTAACAGTGTAAATGAACAAagcaaagaaataaaaatattagagGAAGAA ATCGTTATAATAAAAATAGCAAATACGTGGAAAATATCATGAATCAggaa ttcaatttttcttgaaacCTGCTATCGAAACGTTCTACTTCAAATAGATT TTTATGTCGACGTAAAATGATGAAATCGATTTGATTGGTCATCAGAAGTT GAACTAGACCGGAGTTAAACCATCAAGAATGGCCGAGCAACATTTGGAGG AATATTTTTGATTGATTGGAAAATCAAAGAGTTTTTTATCTTgaataaaa caaatttattgGGACGATTAAAATACATCTGGTATAAATTCAAAGAACCA TATTTGACTGAAATCTTTCATTTGTACGTTTGAGAACTTTTGGTCGAGAA CCCTTCGATTAaacgaaccaaatcgaacgcaatcgaaagTTAATTAACCA ATCACACAATAAGAAAAACATAAGAGATTGCACTACACGTTAAAACacgg tacacgctttttttttattttattttataagaatagtgtactttggttga gggtaagcattattcttattttttattgttctaaacaataggcctattgt tttaaacccgaaatctcaccctgatattcttatagaagttattcttataa aaaaaaagcgtgtagtactTTTCAAACTCTTGTTGACATTACATTATTCC CAACACTGTTTaattcatcaaaacaaacatggcgTTTATGGCTGGTAGTG TTAAAAGTTTAATCGAGTTCAAGATTAAAACTCGCCACGATGGATACTCA GATCAAGTCTCCCGAATCATGGTCACTAAACTTTTCATAGTGGCAAGTCT TATAATGGGTGTTGACTGGTTCCACGATAACCTCTCATGTGTCCATCCAA AAGATATCGATGTTGGAGGCGAGTATATAGAAAGTGCTTGTTGGATCAAA GGATTTTACATATATAGAGAACATGAGCCACATCACCGGGAGTCCGGATA TTACGGGATACCGAACTCGTTATCGATGGACGGGATGCGCCCCGCTTCCG ATCGATTTGATGACGATGAATTTTGTAGCACTAAGGAAAGTAACAATAAC AAACGGAAATATTATAAGACACAATCGACTTGTCAGAAAATGGATAAATA TTATTTTGTTCACTACCAATGGATGCCCTTCTACATCTTCAGTATGTCGG CTTTATTTTATATGCCGTATATTTTGTTCCGTATGGTCAATACTGATGTC ATCAGTTTGAAGTTGAACATGAAAGACGACGAGgtgggtgtttttttttc tcgtagGGGCTAGGCGAGATGGGTCCCGAGTATGTAGGATACGAGTTTTA AAGACTGAAAATCGACGAAAATCGACGAAATATTTTTAGGTAAACTTTTG CAAAGGGCCTCAAAAACGAAAAGAATCTTTCTCTTAAATAGTCGGTTTTT GTTTATCACCCCGTTTTCTtgtaaacctagtaccccctggTCCGTAGTAT GCGGCAACTATATTGGAAAAAGGCCGCGTCCGTACCTTCTGATTCCCACT AGCTTCGTCTAATTCTGGTTTATATACAACTGCCATATTGTAAGGCTAAA TGTAAATGTGCAAGTCACTGCAGTTTAAAAGCGACCTATTATTTTTGGGG GTATTATTTTTGCGAGGTGATGGGAAGGTTTGAGCCAAAGTTCGAacatc gaccctttgagagactgaatttcgaaaattttgccCTATTTTTGACGTTT CTAccaccctttgagagactttttttcccaatttttattcaaaatttcaa attttggtccAGACTATGAAATTTTATAACCCTTTGAGGGACATGATACT GTTAATATTTCGTGGTTTTGTGACCCTTTCAGACTAATTTGCTATATTAT AGTTTTATaccctttcagagacttttGAGGATGTAAAAAGGTGTCGGGTA TGTGAACCCTTTTGGGTTCACATACCCGACAcctattttgcactccccct TCCCGGGGATAGTGGCACTTGTCAGGTTTTAGGAATTTAAAATAACAGAT CTCCCGAATTTTTAAAGAATCCGGCTTATTAAAATCCTAAATCTCAATCA TCAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACGTCA ATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTCAAA GTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGAGTT ATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGTCTT ACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCGACG CCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCATTTC ACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTATGTG AAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGGtat gttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTATCT TCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTTCAA AATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAATTT ATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTTACG TCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACAAGG AAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAAGTG AAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTCGTA AAGATCGTGTGTCACGTGTGTTGTTTAAACGGTTTGTGATGTGGTGTTTG AATGTAGTCACGTGAGGAAGAATTATCTAAAGATTGGAGTTAGTGTTTGT GTGGAAATGACAATGTTGAAAATATCTTgtgaaaggtttttttttaattg ttaaaTGGGTCGTGGCAAATGATGGACGGGTGCGCTGTAGGCATTACGCG TAAAGATTTTTGATCCGACAATTCAGTGAAATTGTCTACGTAAACTGGAA TTTAAAACCTTATCAAAGCTGATTCAAACTATGCTTCAATTGGTGCAGCT CCCATGACTCTTAGAAAGTAACTTTCTCTATCAGATAAGGATCCtaaatc cggg

Coding sequence (CDS) from alignment at scaffold_367:73997..77350+

>TCONS_00062505 ID=TCONS_00062505|Name=TCONS_00062505|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_367:73997..77350+ (Clytia hemisphaerica)
atggcgTTTATGGCTGGTAGTGTTAAAAGTTTAATCGAGTTCAAGATTAA
AACTCGCCACGATGGATACTCAGATCAAGTCTCCCGAATCATGGTCACTA
AACTTTTCATAGTGGCAAGTCTTATAATGGGTGTTGACTGGTTCCACGAT
AACCTCTCATGTGTCCATCCAAAAGATATCGATGTTGGAGGCGAGTATAT
AGAAAGTGCTTGTTGGATCAAAGGATTTTACATATATAGAGAACATGAGC
CACATCACCGGGAGTCCGGATATTACGGGATACCGAACTCGTTATCGATG
GACGGGATGCGCCCCGCTTCCGATCGATTTGATGACGATGAATTTTGTAG
CACTAAGGAAAGTAACAATAACAAACGGAAATATTATAAGACACAATCGA
CTTGTCAGAAAATGGATAAATATTATTTTGTTCACTACCAATGGATGCCC
TTCTACATCTTCAGTATGTCGGCTTTATTTTATATGCCGTATATTTTGTT
CCGTATGGTCAATACTGATGTCATCAGTTTGAAGTTGAACATGAAAGACG
ACGAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACGTC
AATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTCAA
AGTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGAGT
TATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGTCT
TACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCGAC
GCCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCATTT
CACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTATGT
GAAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGGta
tgttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTATC
TTCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTTCA
AAATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAATT
TATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTTAC
GTCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACAAG
GAAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAAGT
GAAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTCGT
AAatggcgTTTATGGCTGGTAGTGTTAAAAGTTTAATCGAGTTCAAGATT
AAAACTCGCCACGATGGATACTCAGATCAAGTCTCCCGAATCATGGTCAC
TAAACTTTTCATAGTGGCAAGTCTTATAATGGGTGTTGACTGGTTCCACG
ATAACCTCTCATGTGTCCATCCAAAAGATATCGATGTTGGAGGCGAGTAT
ATAGAAAGTGCTTGTTGGATCAAAGGATTTTACATATATAGAGAACATGA
GCCACATCACCGGGAGTCCGGATATTACGGGATACCGAACTCGTTATCGA
TGGACGGGATGCGCCCCGCTTCCGATCGATTTGATGACGATGAATTTTGT
AGCACTAAGGAAAGTAACAATAACAAACGGAAATATTATAAGACACAATC
GACTTGTCAGAAAATGGATAAATATTATTTTGTTCACTACCAATGGATGC
CCTTCTACATCTTCAGTATGTCGGCTTTATTTTATATGCCGTATATTTTG
TTCCGTATGGTCAATACTGATGTCATCAGTTTGAAGTTGAACATGAAAGA
CGACGAGGTCACGTGTGACGATATCGTGgaattttatttcaatcatGACG
TCAATCCCGTCTACAAAATGCGTTACCGCTTCTTCATGAATTTCGTGGTC
AAAGTCATTTACCTTATCACGAACATCTCTGCTTTTTACATCCTTGACGA
GTTATTGGATTACCATTTCCAGTCATACGGTCTCGATTGGATTAATTGGT
CTTACCAGAACACGACATTGCGTTATGACTACGAGAGGAGATTGGCGCCG
ACGCCCGGTAATCGTATGTTACCTTCATTCGGTATGTGTGATCTTGTCAT
TTCACGCTTAGACGTCAAAGTCGATAGCGTTGATAAGATAACCGTTTTAT
GTGAAATCTCATCCAATATTTTATACCAATATGTATTCGTGGCACTCTGG
tatgttttgattatttcgatcaGCGTGGCTGCCCTCGGAGTCATTGTCTA
TCTTCAACAGCACATCCACGTCGcgtttttcatcaaaaacgAGCGTTCTT
CAAAATACGTGTATAGACTTTTAACATTCCGCGAATGTCAATATTTAGAA
TTTATCCGTAACCGTGATTTGACTATGTATGGTATTATCGTTAAAAAGTT
ACGTCAAAAGCATTCATTACCGTTACCGAAACTACGTAAAATGGCGAACA
AGGAAGGAGGAGCGACGGCACCGATTTTACCGAATGGGAATACGGTGAAA
GTGAAACATCATTTGAAACATTTGGATTCTATGGAAGACGGAGATTCGTC
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039167XLOC_039167Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062505-proteinTCONS_00062505-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062505-exon-scaffold_367-1491911889:73997..75429TCONS_00062505-exon-scaffold_367-1491911889:73997..75429Clytia hemisphaericaexon
TCONS_00062505-exon-scaffold_367-1510915933:73997..75429TCONS_00062505-exon-scaffold_367-1510915933:73997..75429Clytia hemisphaericaexon
TCONS_00062505-exon-scaffold_367-1575043694:73997..75429TCONS_00062505-exon-scaffold_367-1575043694:73997..75429Clytia hemisphaericaexon
TCONS_00062505-exon-scaffold_367-1491911889:76251..77350TCONS_00062505-exon-scaffold_367-1491911889:76251..77350Clytia hemisphaericaexon
TCONS_00062505-exon-scaffold_367-1510915933:76251..77350TCONS_00062505-exon-scaffold_367-1510915933:76251..77350Clytia hemisphaericaexon
TCONS_00062505-exon-scaffold_367-1575043694:76251..77350TCONS_00062505-exon-scaffold_367-1575043694:76251..77350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_367supercontigscaffold_367:73997..77350 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139297 0.0597142 0.0352564 0.101957 14.0804 11.9934 33.253 33.1497 14.396 18.1777 9.68453 14.6176 5.82244 4.26423 0.251636 0.307284 2.1475 3.18866 11.578 15.0069 5.72946 6.15581 1.19175 2.30726 4.06644 4.88314 0.595815 0.542981 0.125459 0.154898
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000990Innexin
Vocabulary: Cellular Component
TermDefinition
GO:0005921gap junction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005921 gap junction
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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