TCONS_00062480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062480
Unique NameTCONS_00062480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062480 ID=TCONS_00062480|Name=TCONS_00062480|organism=Clytia hemisphaerica|type=transcript|length=1510bp
CTTATTCATAAATTTTGTTATTCACACATACTAAAAAGAGTGTGTAAAAC
ATTCCGATAAAATCCAAACGTCTGGACTTAATTCCGATTTTTCCACGATC
CTATATACCCCTTTTAGAGATAAATTCTTTAAGTCCGCTTTCTAATTGCG
AGATAAACAAccgaaaaaaatgaagaaaacaaagaaactaccagaaacaa
tagattttgaacGAAAGGGCGAATAAAAGTATTTTATCAtaaaaggaaaa
aatgttttttaattgtttaaatattatatatttatttgtTCATTTATTCA
TTGTCTTCAATTAACTGGCTCTTAAACACTTGTTCAAATACTACTCAAAG
ATGGGGGttaaatacatttattttcaaCATGTAAATATATTTGATATATA
ACCCCCTGATGAGTTGATCGAACTCGTAAACGTATAAACACGGCAACAGA
GCCCTCTAAACCATCATTCGTCAAACATCCTTCCACGACAATGGATAGTA
AAGAAGAAAGCGGAACACAAAATGACACCATCCCATCACCGGATAGTGTA
GACTACGGATGTCCGTGCTGCCAACCAAAGCGACGCTATCCACCGCCACC
TTGGTACCATCAACACTACTCTTCATACCACCATCATCAACATAGACCAC
CCTCTACGGAAGGATCACGCTGGCCATTTATCAGCCCACCACCACCGCTG
CCACCGAGCAGTTCTCCACCGCACCGCTCTCCGCCCCCTCCACCGACGGC
CATGAAAGGATGTTGCGATAAGAGAACTTGCTATACACCGCTTCATCACC
AGTTTCACCACCATTCACCGCATTACGatACCTTCTTCGGCCACCACGAC
ATGTCAGAGCCGTTAGCGCAATTTCATCGTCAAAAACGTTTCCGTCGTAT
GCGCATGCGTACTAACTTTACGTCATGGCAACTGGATGAATTAGAAAATG
CTTTCCAAAAGACTCATTACCCAGATGTTTTTATGCGTGAAGAACTTGCC
ATGAAATTGCAATTATTGGAATCTCGTGTGCAGGTTTGGTTTCAAAACCG
CCGTGCAAAATGGCGTAAACGCGAACGTCACATCGAAGATGGCGGAGGCG
CAACGGGTGAAAACAACAACGAaaaagatgacgtcattcaagATGCCACG
AAAGATCAAAGTCCATCTTCAAGTCCATTTTCATTGGTTGACGAAAACGA
TGTTACTGATCGGGAAATTGATATCACAATGGCTggaaatcgggaaaatc
ggGTTGACGAAAGAAGAATTCCGATTTCAACACACAAGGTATCGAAATCA
CATAATTCGAGTGGTAAAAAACAGTTttgcattgaaaacattctgacgGA
TAAGATTTCgaataataaaaaatttcaacaatCGTCTTCAAACATAAACA
CAAAGACTGAGTACGAGCCAATCATTATCTCAACTCGATTCTCTGGAGAC
TCTCTAACTCATCCACATCAATATTGTGAAAGCCCATCACCTGTTAATAG
TTGTGGTGGA
Run BLAST on NCBI

protein sequence of Unc

>TCONS_00062480-protein ID=TCONS_00062480-protein|Name=Unc|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MDSKEESGTQNDTIPSPDSVDYGCPCCQPKRRYPPPPWYHQHYSSYHHHQ
HRPPSTEGSRWPFISPPPPLPPSSSPPHRSPPPPPTAMKGCCDKRTCYTP
LHHQFHHHSPHYDTFFGHHDMSEPLAQFHRQKRFRRMRMRTNFTSWQLDE
LENAFQKTHYPDVFMREELAMKLQLLESRVQVWFQNRRAKWRKRERHIED
GGGATGENNNEKDDVIQDATKDQSPSSSPFSLVDENDVTDREIDITMAGN
RENRVDERRIPISTHKVSKSHNSSGKKQFCIENILTDKISNNKKFQQSSS
NINTKTEYEPIIISTRFSGDSLTHPHQYCESPSPVNSCGG
Run BLAST on NCBI

transcript from alignment at scaffold_365:144039..146590-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062480 ID=TCONS_00062480|Name=TCONS_00062480|organism=Clytia hemisphaerica|type=transcript|length=2552bp|location=Sequence derived from alignment at scaffold_365:144039..146590- (Clytia hemisphaerica)
CTTATTCATAAATTTTGTTATTCACACATACTAAAAAGAGTGTGTAAAAC
ATTCCGATAAAATCCAAACGTCTGGACTTAATTCCGATTTTTCCACGATC
CTATATACCCCTTTTAGAGATAAATTCTTTAAGTCCGCTTTCTAATTGCG
AGATAAACAACCGAAAAAAATGAAGAAAACAAAGAAACTACCAGAAACAA
TAGATTTTGAACGAAAGGGCGAATAAAAGTATTTTATCATAAAAGGAAAA
AATGTTTTTTAATTGTTTAAATATTATATATTTATTTGTTCATTTATTCA
TTGTCTTCAATTAACTGGCTCTTAAACACTTGTTCAAATACTACTCAAAG
ATGGGGGTTAAATACATTTATTTTCAACATGTAAATATATTTGATATATA
ACCCCCTGATGAGTTGATCGAACTCGTAAACGTATAAACACGGCAACAGA
GCCCTCTAAACCATCATTCGTCAAACATCCTTCCACGACAATGGATAGTA
AAGAAGAAAGCGGAACACAAAATGACACCATCCCATCACCGGATAGTGTA
GACTACGGATGTCCGTGCTGCCAACCAAAGCGACGCTATCCACCGCCACC
TTGGTACCATCAACACTACTCTTCATACCACCATCATCAACATAGACCAC
CCTCTACGGAAGGATCACGCTGGCCATTTATCAGCCCACCACCACCGCTG
CCACCGAGCAGTTCTCCACCGCACCGCTCTCCGCCCCCTCCACCGACGGC
CATGAAAGGATGTTGCGATAAGAGAACTTGCTATACACCGCTTCATCACC
AGTTTCACCACCATTCACCGCATTACGGTAAGACATAATCATTTCCTATT
TTTATTTCTACGACTACTTAGTTCTAATTCAGACGGACTAACTCCTGCCT
TGTTGGTATGTTTATATGGATTGGGCTTTGGGCTTTCGGAACGCGCACGG
GAGTTTCCTTAGACCAGGTTATCGCGTCTGTTACAGTGATAGGGTGGAAA
ATATTATACGCGCCCAGAGTTTACAGCCACTATGGCGGCAGACGGAAAAA
ACAGCGGTAGAGTTTCGAAGAAACTGGCAATTTCTACCTACTGTAAACAA
CTCTTTTCGGCAAAAAACTCGTTTGTGAATTTTCTTTGGCTTTGGGCTTA
TTTCTTAGATAGTGATTTGTCTTAGACTTTAGCATAGTCTAGAGTTTACT
GAGCCCAAATTGTACGGAATTTTCTTACACGTACTGAGGGGCTTACTTCT
GATCTATTAAATTTAAATGAGTGACGAGGTCATACAATTTCATGTTTTTT
TTTCAACAGATACCTTCTTCGGCCACCACGACATGTCAGAGCCGTTAGCG
CAATTTCATCGTCAAAAACGTTTCCGTCGTATGCGCATGCGTACTAACTT
TACGTCATGGCAACTGGATGAATTAGAAAATGCTTTCCAAAAGACTCATT
ACCCAGATGTTTTTATGCGTGAAGAACTTGCCATGAAATTGCAATTATTG
GAATCTCGTGTGCAGGTTAGTTTACTGTCGATTTTTACGGAATCTATTTA
TTTTTTAATTTTGTTGGGTATATTCGAAATTATTCCTTGATAGACCTTTT
CATAAATCACGTTACGAACATCAGTTGCCTCGTTTTCAAACAATTGCCAT
GGTGATTATGTCCCTTGAGAGATTAAATGATTTTTATATGAATAGAAAGT
AGTTTTAATAAAATCCGCTGGGAGTAAATCACCTTGACAATAATTTGCTT
GGGATTTGAAGTTCTCATATTTTTGTTTAGTAATTTTAACTAGGATTTTT
TGATCTGGAAATGCATTATTCATGTGGCATCGATTTGAGGGTTTTATTTT
CAAACGGGAGATGCCGAAATATCTGGTTTTCCAGTTTTACTTTCTTTTCC
ATGGCAAACTTACCATAAAGCTTGGTTCCTACTCTGATTTTCTAAATAGC
AAAGCGAAAGTTCTGGCACTCTGTATATTTGGCTAACTTTTACTAGCGAG
AGCATAATTATAAACATATGATACATATTCTGAAGATTATTATGTTGTAT
CATTTTAAAATCGCTTTACCGTTAGGTTTGGTTTCAAAACCGCCGTGCAA
AATGGCGTAAACGCGAACGTCACATCGAAGATGGCGGAGGCGCAACGGGT
GAAAACAACAACGAAAAAGATGACGTCATTCAAGATGCCACGAAAGATCA
AAGTCCATCTTCAAGTCCATTTTCATTGGTTGACGAAAACGATGTTACTG
ATCGGGAAATTGATATCACAATGGCTGGAAATCGGGAAAATCGGGTTGAC
GAAAGAAGAATTCCGATTTCAACACACAAGGTATCGAAATCACATAATTC
GAGTGGTAAAAAACAGTTTTGCATTGAAAACATTCTGACGGATAAGATTT
CGAATAATAAAAAATTTCAACAATCGTCTTCAAACATAAACACAAAGACT
GAGTACGAGCCAATCATTATCTCAACTCGATTCTCTGGAGACTCTCTAAC
TCATCCACATCAATATTGTGAAAGCCCATCACCTGTTAATAGTTGTGGTG
GA

Coding sequence (CDS) from alignment at scaffold_365:144039..146590-

>TCONS_00062480 ID=TCONS_00062480|Name=TCONS_00062480|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_365:144039..146590- (Clytia hemisphaerica)
GTTTGGTTTCAAAACCGCCGTGCAAAATGGCGTAAACGCGAACGTCACAT
CGAAGATGGCGGAGGCGCAACGGGTGAAAACAACAACGAAAAAGATGACG
TCATTCAAGATGCCACGAAAGATCAAAGTCCATCTTCAAGTCCATTTTCA
TTGGTTGACGAAAACGATGTTACTGATCGGGAAATTGATATCACAATGGC
TGGAAATCGGGAAAATCGGGTTGACGAAAGAAGAATTCCGATTTCAACAC
ACAAGGTATCGAAATCACATAATTCGAGTGGTAAAAAACAGTTTTGCATT
GAAAACATTCTGACGGATAAGATTTCGAATAATAAAAAATTTCAACAATC
GTCTTCAAACATAAACACAAAGACTGAGTACGAGCCAATCATTATCTCAA
CTCGATTCTCTGGAGACTCTCTAACTCATCCACATCAATATTGTGAAAGC
CCATCACCTGTTAATAGTTGTGGTGGAATACCTTCTTCGGCCACCACGAC
ATGTCAGAGCCGTTAGCGCAATTTCATCGTCAAAAACGTTTCCGTCGTAT
GCGCATGCGTACTAACTTTACGTCATGGCAACTGGATGAATTAGAAAATG
CTTTCCAAAAGACTCATTACCCAGATGTTTTTATGCGTGAAGAACTTGCC
ATGAAATTGCAATTATTGGAATCTCGTGTGCAGATGGATAGTAAAGAAGA
AAGCGGAACACAAAATGACACCATCCCATCACCGGATAGTGTAGACTACG
GATGTCCGTGCTGCCAACCAAAGCGACGCTATCCACCGCCACCTTGGTAC
CATCAACACTACTCTTCATACCACCATCATCAACATAGACCACCCTCTAC
GGAAGGATCACGCTGGCCATTTATCAGCCCACCACCACCGCTGCCACCGA
GCAGTTCTCCACCGCACCGCTCTCCGCCCCCTCCACCGACGGCCATGAAA
GGATGTTGCGATAAGAGAACTTGCTATACACCGCTTCATCACCAGTTTCA
CCACCATTCACCGCATTACGGTTTGGTTTCAAAACCGCCGTGCAAAATGG
CGTAAACGCGAACGTCACATCGAAGATGGCGGAGGCGCAACGGGTGAAAA
CAACAACGAAAAAGATGACGTCATTCAAGATGCCACGAAAGATCAAAGTC
CATCTTCAAGTCCATTTTCATTGGTTGACGAAAACGATGTTACTGATCGG
GAAATTGATATCACAATGGCTGGAAATCGGGAAAATCGGGTTGACGAAAG
AAGAATTCCGATTTCAACACACAAGGTATCGAAATCACATAATTCGAGTG
GTAAAAAACAGTTTTGCATTGAAAACATTCTGACGGATAAGATTTCGAAT
AATAAAAAATTTCAACAATCGTCTTCAAACATAAACACAAAGACTGAGTA
CGAGCCAATCATTATCTCAACTCGATTCTCTGGAGACTCTCTAACTCATC
CACATCAATATTGTGAAAGCCCATCACCTGTTAATAGTTGTGGTGGAATA
CCTTCTTCGGCCACCACGACATGTCAGAGCCGTTAGCGCAATTTCATCGT
CAAAAACGTTTCCGTCGTATGCGCATGCGTACTAACTTTACGTCATGGCA
ACTGGATGAATTAGAAAATGCTTTCCAAAAGACTCATTACCCAGATGTTT
TTATGCGTGAAGAACTTGCCATGAAATTGCAATTATTGGAATCTCGTGTG
CAGATGGATAGTAAAGAAGAAAGCGGAACACAAAATGACACCATCCCATC
ACCGGATAGTGTAGACTACGGATGTCCGTGCTGCCAACCAAAGCGACGCT
ATCCACCGCCACCTTGGTACCATCAACACTACTCTTCATACCACCATCAT
CAACATAGACCACCCTCTACGGAAGGATCACGCTGGCCATTTATCAGCCC
ACCACCACCGCTGCCACCGAGCAGTTCTCCACCGCACCGCTCTCCGCCCC
CTCCACCGACGGCCATGAAAGGATGTTGCGATAAGAGAACTTGCTATACA
CCGCTTCATCACCAGTTTCACCACCATTCACCGCATTACGGTTTGGTTTC
AAAACCGCCGTGCAAAATGGCGTAAACGCGAACGTCACATCGAAGATGGC
GGAGGCGCAACGGGTGAAAACAACAACGAAAAAGATGACGTCATTCAAGA
TGCCACGAAAGATCAAAGTCCATCTTCAAGTCCATTTTCATTGGTTGACG
AAAACGATGTTACTGATCGGGAAATTGATATCACAATGGCTGGAAATCGG
GAAAATCGGGTTGACGAAAGAAGAATTCCGATTTCAACACACAAGGTATC
GAAATCACATAATTCGAGTGGTAAAAAACAGTTTTGCATTGAAAACATTC
TGACGGATAAGATTTCGAATAATAAAAAATTTCAACAATCGTCTTCAAAC
ATAAACACAAAGACTGAGTACGAGCCAATCATTATCTCAACTCGATTCTC
TGGAGACTCTCTAACTCATCCACATCAATATTGTGAAAGCCCATCACCTG
TTAATAGTTGTGGTGGAATACCTTCTTCGGCCACCACGACATGTCAGAGC
CGTTAGCGCAATTTCATCGTCAAAAACGTTTCCGTCGTATGCGCATGCGT
ACTAACTTTACGTCATGGCAACTGGATGAATTAGAAAATGCTTTCCAAAA
GACTCATTACCCAGATGTTTTTATGCGTGAAGAACTTGCCATGAAATTGC
AATTATTGGAATCTCGTGTGCAGATGGATAGTAAAGAAGAAAGCGGAACA
CAAAATGACACCATCCCATCACCGGATAGTGTAGACTACGGATGTCCGTG
CTGCCAACCAAAGCGACGCTATCCACCGCCACCTTGGTACCATCAACACT
ACTCTTCATACCACCATCATCAACATAGACCACCCTCTACGGAAGGATCA
CGCTGGCCATTTATCAGCCCACCACCACCGCTGCCACCGAGCAGTTCTCC
ACCGCACCGCTCTCCGCCCCCTCCACCGACGGCCATGAAAGGATGTTGCG
ATAAGAGAACTTGCTATACACCGCTTCATCACCAGTTTCACCACCATTCA
CCGCATTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039146XLOC_039146Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
UncTCONS_00062480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062480-exon-scaffold_365-1575043694:145764..146590TCONS_00062480-exon-scaffold_365-1575043694:145764..146590Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1575043694:145076..145281TCONS_00062480-exon-scaffold_365-1575043694:145076..145281Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1575043694:144039..144515TCONS_00062480-exon-scaffold_365-1575043694:144039..144515Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1510915933:145764..146590TCONS_00062480-exon-scaffold_365-1510915933:145764..146590Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1510915933:145076..145281TCONS_00062480-exon-scaffold_365-1510915933:145076..145281Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1510915933:144039..144515TCONS_00062480-exon-scaffold_365-1510915933:144039..144515Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1491911889:145764..146590TCONS_00062480-exon-scaffold_365-1491911889:145764..146590Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1491911889:145076..145281TCONS_00062480-exon-scaffold_365-1491911889:145076..145281Clytia hemisphaericaexon
TCONS_00062480-exon-scaffold_365-1491911889:144039..144515TCONS_00062480-exon-scaffold_365-1491911889:144039..144515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:144039..146590 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272696	0.265922	0.15438	0.211452	0.367746	0.523076	27.2762	30.8528	7.23856	11.2432	7.7634	4.35874	2.28515	3.27722	3.93308	5.11814	1.96523	2.28707	4.55114	4.1861	1.31829	1.38891	2.21994	2.33094	4.04039	3.76273	0.673056	0.718304	11.6831	18.1324
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
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BLAST of TCONS_00062480 vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.030e-24
Identity = 55/92 (59.78%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  911 TNFTSWQLDELENAFQKTHYPDVFMREELAMKLQLLESRVQVWFQNRRAKWRKRERHIEDGGGATGENNNEKDDVIQDATKDQSP--SSSPF 1180
            T FTS+QL+ELE AFQKTHYPDVF REELAM+L L E+RVQVWFQNRRAKWRKRE+      GA              AT   SP   +SPF
Sbjct:  333 TTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREK-----AGAQTHPPGLPFPGPLSATHPLSPYLDASPF 419
The following BLAST results are available for this feature:
BLAST of TCONS_00062480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARX2.030e-2459.78Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S... [more]
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