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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062479 ID=TCONS_00062479|Name=TCONS_00062479|organism=Clytia hemisphaerica|type=transcript|length=3381bpRun BLAST on NCBI protein sequence of TCONS_00062479-protein >TCONS_00062479-protein ID=TCONS_00062479-protein|Name=TCONS_00062479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp MDIDEPAALFEDLTPNKDGGVTKTITKQGTGNATPYKGAKVHVHYTGRLLRun BLAST on NCBI transcript from alignment at scaffold_365:2592..13625- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062479 ID=TCONS_00062479|Name=TCONS_00062479|organism=Clytia hemisphaerica|type=transcript|length=11034bp|location=Sequence derived from alignment at scaffold_365:2592..13625- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_365:2592..13625- >TCONS_00062479 ID=TCONS_00062479|Name=TCONS_00062479|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_365:2592..13625- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062479 vs. Swiss-Prot (Human)
Match: PCH2 (Pachytene checkpoint protein 2 homolog OS=Homo sapiens GN=TRIP13 PE=1 SV=2) HSP 1 Score: 432.18 bits (1110), Expect = 1.639e-139 Identity = 244/403 (60.55%), Postives = 295/403 (73.20%), Query Frame = 2
Query: 1655 MDH-VNELGDALPAQA-SDLIHVEVCKTQNSIAKDGEIQNLVLHYLETVPSMKYGDIYTDFAGQSDIFTNNIDHIVI--SESSNPNSVSIDKSKVKMMIHVYTLNTXX-XXXXXXXXXXXXXXXNHWILPSSEFEGLWENLIFDHDVKQQLLNYSSTTLLFSDKEVDPNIIAWNRVVLLHGPPGTGKTSLCKALAQKLTIRHSNRFRYGQLIEINSHSLFSKWFSESGKLVMKMFQRIQELIDDPSALVCVLIDEVESLTAARTAAMKGTEPSDAIRVVNALLTQIDQIRKYPNVMILTTSNITGAIDLAFVDRADIKQYIGPPSENAIFSIYHSCINELKKRQII-TRANLPDLRTLKMMRFQENEANSTSFRLLEVARKSCGLSGRTLRKLPFLTHALFLQ 2845
MD V +L ALP A S +HVEV + +S AK +I NL + L ++ +GD YT T N+ + I +E +S ID S + +H++ LN +G ++ EE E+I AANHW+LP++EF GLW++L++D +VK LL+Y TTLLFSDK V+ N+I WNRVVLLHGPPGTGKTSLCKALAQKLTIR S+R+RYGQLIEINSHSLFSKWFSESGKLV KMFQ+IQ+LIDD ALV VLIDEVESLTAAR A GTEPSDAIRVVNA+LTQIDQI+++ NV+ILTTSNIT ID+AFVDRADIKQYIGPPS AIF IY SC+ EL K QII R L LR L+M+ F EN + S L +++RKS GLSGR LRKLPFL HAL++Q
Sbjct: 1 MDEAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDI-NLSVRKLLNRHNIVFGD-YTWTEFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARNACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLNDISRKSEGLSGRVLRKLPFLAHALYVQ 401 The following BLAST results are available for this feature:
BLAST of TCONS_00062479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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