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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062478 ID=TCONS_00062478|Name=TCONS_00062478|organism=Clytia hemisphaerica|type=transcript|length=2133bp
aaaagttaaCGCAAAGTTATAATCCAAAAATTATATCGTGTTTcggttta
aaaaaatcaatacaAACAGTGTTTAAACGTTGTTTAAGAATCAAGTTCCT
GACCTTTGAAGATTAAATCCGCAAAGCAGCGAGGACAGGGTAAAACAATT
CTGGGATTCTCAACTTTTTTGGTGAAAGTAAAGACTTGCCACCGTGTGTC
CATCATGGCAGTCTCTCCAGGGTCTTTAGAGTTTCCTTTGCCGACATATT
CAAACGGTCGGATACTCGTAGAAAAAAAAGGTACGGAATTTGACCTTTCA
ATGGTGAGGTCTGTTGCAAATGTATTTTTCGGGCGGGGTAAATTCACGGT
GTCTCCCTCCAATAAAAGTAAAAAGTCCTTCCAATCAATACACTCCGCAG
ACCATCTGAAATCATTTAAAAGGGCAACTTCTTTGTCTTCCAAGCTAACC
CACGCATATTTTGTGTTTGACGGGTTCGCAAACGCGTCGTAAACCAATTG
CAAAGGGGTGAGCAAGAACGACTTACCACAAGTTGATGGACCAACAATCA
AAACATTGTTTCCCTTGCCCCTTCCATTTTTAAGCGCATTACGCATTGCA
gcagcaaaaacataaacatttaCAGAATTTGACTGTAAGATGCTGACTGC
ACATCTCAGCCACTCGTGTTGGATACAACTTTCAGCGCATGGCCCTTGAA
AAGCATCATTTAGAATTTCCATGCGCGTTTTCTTTCTTCGCTCAAGAATT
GCACCGGCCTCTTCCATTTCCCATGTTGTCGCTATTAATTCGTTTACAAA
TTTTGTGGAGTGACCTACAACCCACGCTTTAAGGTCTCGCTCACCATTCT
TAGCGCGTACATTAGCAATATGCAGAAGGACTGTTCTTGACCTTATGCCT
TCCTTTACTATAAATTCAGATACCTCATAAGGCTTAAGCTTGTCTGGTGC
AAAAAACTCCTCCTTCTCTTCTTCGCTGTCCTGTCCTGAGTCTGAAACCT
CGAGCAAATCGAATGAGTCTGAATGACTTGAATTACTTTCCCCCTGttct
ttttcactttcactAGTAGAATCATCAATAAACTTAAGTCTTTTCAATGC
CTTTGACTTCTTTTTACTTCCTCCCTGCTTGCTGCTGCTGGCTGAGTTCT
GACTGAACTTGCGCATAGCCTTTGAGGTTTTCGGGGTTCTAATCCGTGTC
ATCGGTGAGTGACCTTCACTATGAAGTACCTCGTTACCAGGCTTGTTTTT
AGAAATGTACCTGTAGGCCGCGACATAGCCTAAGCTCTTGATCTTGAAAT
GAATCGacactttgaaagtttttaaaaaatatttctttacagGCGCAAAT
CGAAGAGACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCTGT
TGTGGGATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTCTC
CAAAGGCTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATGTA
CTCATGTCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCATT
GACTTTCGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGGCT
TGCCCATTCTTTTGTTtactgtttactttttatttctaatctgaaaaagg
aaaaaaacaaacaaactataCTTGTAAATATATGTGTGTATATGTGCTTA
TAAAATGTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACCTT
GTTCAGATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGGCT
TCTTGAGGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcgggg
aaaatcggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGCGG
AAATTGCATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAACAA
CATGgctccttttcaaaaaaatttttttggttatGCATAGGGGAACCTCt
gctcaaatttttatttttttaagacaATCCTGGACATAACTATTTgtcca
ccccctccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCAAA
TTTCATCCCTCCAACATTGAAAGTGGGGGAGGG Run BLAST on NCBI transcript from alignment at scaffold_365:188743..190875+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062478 ID=TCONS_00062478|Name=TCONS_00062478|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at scaffold_365:188743..190875+ (Clytia hemisphaerica)
aaaagttaaCGCAAAGTTATAATCCAAAAATTATATCGTGTTTcggttta
aaaaaatcaatacaAACAGTGTTTAAACGTTGTTTAAGAATCAAGTTCCT
GACCTTTGAAGATTAAATCCGCAAAGCAGCGAGGACAGGGTAAAACAATT
CTGGGATTCTCAACTTTTTTGGTGAAAGTAAAGACTTGCCACCGTGTGTC
CATCATGGCAGTCTCTCCAGGGTCTTTAGAGTTTCCTTTGCCGACATATT
CAAACGGTCGGATACTCGTAGAAAAAAAAGGTACGGAATTTGACCTTTCA
ATGGTGAGGTCTGTTGCAAATGTATTTTTCGGGCGGGGTAAATTCACGGT
GTCTCCCTCCAATAAAAGTAAAAAGTCCTTCCAATCAATACACTCCGCAG
ACCATCTGAAATCATTTAAAAGGGCAACTTCTTTGTCTTCCAAGCTAACC
CACGCATATTTTGTGTTTGACGGGTTCGCAAACGCGTCGTAAACCAATTG
CAAAGGGGTGAGCAAGAACGACTTACCACAAGTTGATGGACCAACAATCA
AAACATTGTTTCCCTTGCCCCTTCCATTTTTAAGCGCATTACGCATTGCA
gcagcaaaaacataaacatttaCAGAATTTGACTGTAAGATGCTGACTGC
ACATCTCAGCCACTCGTGTTGGATACAACTTTCAGCGCATGGCCCTTGAA
AAGCATCATTTAGAATTTCCATGCGCGTTTTCTTTCTTCGCTCAAGAATT
GCACCGGCCTCTTCCATTTCCCATGTTGTCGCTATTAATTCGTTTACAAA
TTTTGTGGAGTGACCTACAACCCACGCTTTAAGGTCTCGCTCACCATTCT
TAGCGCGTACATTAGCAATATGCAGAAGGACTGTTCTTGACCTTATGCCT
TCCTTTACTATAAATTCAGATACCTCATAAGGCTTAAGCTTGTCTGGTGC
AAAAAACTCCTCCTTCTCTTCTTCGCTGTCCTGTCCTGAGTCTGAAACCT
CGAGCAAATCGAATGAGTCTGAATGACTTGAATTACTTTCCCCCTGttct
ttttcactttcactAGTAGAATCATCAATAAACTTAAGTCTTTTCAATGC
CTTTGACTTCTTTTTACTTCCTCCCTGCTTGCTGCTGCTGGCTGAGTTCT
GACTGAACTTGCGCATAGCCTTTGAGGTTTTCGGGGTTCTAATCCGTGTC
ATCGGTGAGTGACCTTCACTATGAAGTACCTCGTTACCAGGCTTGTTTTT
AGAAATGTACCTGTAGGCCGCGACATAGCCTAAGCTCTTGATCTTGAAAT
GAATCGacactttgaaagtttttaaaaaatatttctttacagGCGCAAAT
CGAAGAGACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCTGT
TGTGGGATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTCTC
CAAAGGCTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATGTA
CTCATGTCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCATT
GACTTTCGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGGCT
TGCCCATTCTTTTGTTtactgtttactttttatttctaatctgaaaaagg
aaaaaaacaaacaaactataCTTGTAAATATATGTGTGTATATGTGCTTA
TAAAATGTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACCTT
GTTCAGATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGGCT
TCTTGAGGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcgggg
aaaatcggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGCGG
AAATTGCATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAACAA
CATGgctccttttcaaaaaaatttttttggttatGCATAGGGGAACCTCt
gctcaaatttttatttttttaagacaATCCTGGACATAACTATTTgtcca
ccccctccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCAAA
TTTCATCCCTCCAACATTGAAAGTGGGGGAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062478-exon-scaffold_365-1491911889:188743..190875 | TCONS_00062478-exon-scaffold_365-1491911889:188743..190875 | Clytia hemisphaerica | exon |
| TCONS_00062478-exon-scaffold_365-1510915933:188743..190875 | TCONS_00062478-exon-scaffold_365-1510915933:188743..190875 | Clytia hemisphaerica | exon |
| TCONS_00062478-exon-scaffold_365-1575043694:188743..190875 | TCONS_00062478-exon-scaffold_365-1575043694:188743..190875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_365 | supercontig | scaffold_365:188743..190875 + |
Blast
The following BLAST results are available for this feature:
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