TCONS_00062478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062478
Unique NameTCONS_00062478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2133

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062478 ID=TCONS_00062478|Name=TCONS_00062478|organism=Clytia hemisphaerica|type=transcript|length=2133bp
aaaagttaaCGCAAAGTTATAATCCAAAAATTATATCGTGTTTcggttta
aaaaaatcaatacaAACAGTGTTTAAACGTTGTTTAAGAATCAAGTTCCT
GACCTTTGAAGATTAAATCCGCAAAGCAGCGAGGACAGGGTAAAACAATT
CTGGGATTCTCAACTTTTTTGGTGAAAGTAAAGACTTGCCACCGTGTGTC
CATCATGGCAGTCTCTCCAGGGTCTTTAGAGTTTCCTTTGCCGACATATT
CAAACGGTCGGATACTCGTAGAAAAAAAAGGTACGGAATTTGACCTTTCA
ATGGTGAGGTCTGTTGCAAATGTATTTTTCGGGCGGGGTAAATTCACGGT
GTCTCCCTCCAATAAAAGTAAAAAGTCCTTCCAATCAATACACTCCGCAG
ACCATCTGAAATCATTTAAAAGGGCAACTTCTTTGTCTTCCAAGCTAACC
CACGCATATTTTGTGTTTGACGGGTTCGCAAACGCGTCGTAAACCAATTG
CAAAGGGGTGAGCAAGAACGACTTACCACAAGTTGATGGACCAACAATCA
AAACATTGTTTCCCTTGCCCCTTCCATTTTTAAGCGCATTACGCATTGCA
gcagcaaaaacataaacatttaCAGAATTTGACTGTAAGATGCTGACTGC
ACATCTCAGCCACTCGTGTTGGATACAACTTTCAGCGCATGGCCCTTGAA
AAGCATCATTTAGAATTTCCATGCGCGTTTTCTTTCTTCGCTCAAGAATT
GCACCGGCCTCTTCCATTTCCCATGTTGTCGCTATTAATTCGTTTACAAA
TTTTGTGGAGTGACCTACAACCCACGCTTTAAGGTCTCGCTCACCATTCT
TAGCGCGTACATTAGCAATATGCAGAAGGACTGTTCTTGACCTTATGCCT
TCCTTTACTATAAATTCAGATACCTCATAAGGCTTAAGCTTGTCTGGTGC
AAAAAACTCCTCCTTCTCTTCTTCGCTGTCCTGTCCTGAGTCTGAAACCT
CGAGCAAATCGAATGAGTCTGAATGACTTGAATTACTTTCCCCCTGttct
ttttcactttcactAGTAGAATCATCAATAAACTTAAGTCTTTTCAATGC
CTTTGACTTCTTTTTACTTCCTCCCTGCTTGCTGCTGCTGGCTGAGTTCT
GACTGAACTTGCGCATAGCCTTTGAGGTTTTCGGGGTTCTAATCCGTGTC
ATCGGTGAGTGACCTTCACTATGAAGTACCTCGTTACCAGGCTTGTTTTT
AGAAATGTACCTGTAGGCCGCGACATAGCCTAAGCTCTTGATCTTGAAAT
GAATCGacactttgaaagtttttaaaaaatatttctttacagGCGCAAAT
CGAAGAGACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCTGT
TGTGGGATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTCTC
CAAAGGCTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATGTA
CTCATGTCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCATT
GACTTTCGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGGCT
TGCCCATTCTTTTGTTtactgtttactttttatttctaatctgaaaaagg
aaaaaaacaaacaaactataCTTGTAAATATATGTGTGTATATGTGCTTA
TAAAATGTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACCTT
GTTCAGATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGGCT
TCTTGAGGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcgggg
aaaatcggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGCGG
AAATTGCATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAACAA
CATGgctccttttcaaaaaaatttttttggttatGCATAGGGGAACCTCt
gctcaaatttttatttttttaagacaATCCTGGACATAACTATTTgtcca
ccccctccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCAAA
TTTCATCCCTCCAACATTGAAAGTGGGGGAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_365:188743..190875+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062478 ID=TCONS_00062478|Name=TCONS_00062478|organism=Clytia hemisphaerica|type=transcript|length=2133bp|location=Sequence derived from alignment at scaffold_365:188743..190875+ (Clytia hemisphaerica)
aaaagttaaCGCAAAGTTATAATCCAAAAATTATATCGTGTTTcggttta aaaaaatcaatacaAACAGTGTTTAAACGTTGTTTAAGAATCAAGTTCCT GACCTTTGAAGATTAAATCCGCAAAGCAGCGAGGACAGGGTAAAACAATT CTGGGATTCTCAACTTTTTTGGTGAAAGTAAAGACTTGCCACCGTGTGTC CATCATGGCAGTCTCTCCAGGGTCTTTAGAGTTTCCTTTGCCGACATATT CAAACGGTCGGATACTCGTAGAAAAAAAAGGTACGGAATTTGACCTTTCA ATGGTGAGGTCTGTTGCAAATGTATTTTTCGGGCGGGGTAAATTCACGGT GTCTCCCTCCAATAAAAGTAAAAAGTCCTTCCAATCAATACACTCCGCAG ACCATCTGAAATCATTTAAAAGGGCAACTTCTTTGTCTTCCAAGCTAACC CACGCATATTTTGTGTTTGACGGGTTCGCAAACGCGTCGTAAACCAATTG CAAAGGGGTGAGCAAGAACGACTTACCACAAGTTGATGGACCAACAATCA AAACATTGTTTCCCTTGCCCCTTCCATTTTTAAGCGCATTACGCATTGCA gcagcaaaaacataaacatttaCAGAATTTGACTGTAAGATGCTGACTGC ACATCTCAGCCACTCGTGTTGGATACAACTTTCAGCGCATGGCCCTTGAA AAGCATCATTTAGAATTTCCATGCGCGTTTTCTTTCTTCGCTCAAGAATT GCACCGGCCTCTTCCATTTCCCATGTTGTCGCTATTAATTCGTTTACAAA TTTTGTGGAGTGACCTACAACCCACGCTTTAAGGTCTCGCTCACCATTCT TAGCGCGTACATTAGCAATATGCAGAAGGACTGTTCTTGACCTTATGCCT TCCTTTACTATAAATTCAGATACCTCATAAGGCTTAAGCTTGTCTGGTGC AAAAAACTCCTCCTTCTCTTCTTCGCTGTCCTGTCCTGAGTCTGAAACCT CGAGCAAATCGAATGAGTCTGAATGACTTGAATTACTTTCCCCCTGttct ttttcactttcactAGTAGAATCATCAATAAACTTAAGTCTTTTCAATGC CTTTGACTTCTTTTTACTTCCTCCCTGCTTGCTGCTGCTGGCTGAGTTCT GACTGAACTTGCGCATAGCCTTTGAGGTTTTCGGGGTTCTAATCCGTGTC ATCGGTGAGTGACCTTCACTATGAAGTACCTCGTTACCAGGCTTGTTTTT AGAAATGTACCTGTAGGCCGCGACATAGCCTAAGCTCTTGATCTTGAAAT GAATCGacactttgaaagtttttaaaaaatatttctttacagGCGCAAAT CGAAGAGACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCTGT TGTGGGATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTCTC CAAAGGCTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATGTA CTCATGTCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCATT GACTTTCGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGGCT TGCCCATTCTTTTGTTtactgtttactttttatttctaatctgaaaaagg aaaaaaacaaacaaactataCTTGTAAATATATGTGTGTATATGTGCTTA TAAAATGTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACCTT GTTCAGATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGGCT TCTTGAGGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcgggg aaaatcggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGCGG AAATTGCATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAACAA CATGgctccttttcaaaaaaatttttttggttatGCATAGGGGAACCTCt gctcaaatttttatttttttaagacaATCCTGGACATAACTATTTgtcca ccccctccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCAAA TTTCATCCCTCCAACATTGAAAGTGGGGGAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039144XLOC_039144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062478-exon-scaffold_365-1491911889:188743..190875TCONS_00062478-exon-scaffold_365-1491911889:188743..190875Clytia hemisphaericaexon
TCONS_00062478-exon-scaffold_365-1510915933:188743..190875TCONS_00062478-exon-scaffold_365-1510915933:188743..190875Clytia hemisphaericaexon
TCONS_00062478-exon-scaffold_365-1575043694:188743..190875TCONS_00062478-exon-scaffold_365-1575043694:188743..190875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:188743..190875 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.50174 5.38097 18.9592 21.802 7.76111 7.6241 4.64605 4.98475 4.37286 3.39514 7.56228 5.6091 4.0465 4.70671 3.50976 2.71581 5.61484 5.0131 3.92229 3.36278 6.23838 6.04017 4.6249 5.10866 15.8765 27.6034 2.44057 2.12268 1.59399 1.27852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top