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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062477 ID=TCONS_00062477|Name=TCONS_00062477|organism=Clytia hemisphaerica|type=transcript|length=1534bp
CCTGGACATAACTATTTgtccaccccctccccccatcTTCAGTGTTGATG
TGTAGTTGGTGGAACTTGCAAATTTCATCCCTCCAACATTNGCCGTACTT
TGGAAGCATCACAGCTGAAAAGATGGCAACCATCGTCGCAGACCATTTCG
ATACGGCATTTTTAAAGAGTTCCAACCCTATAACCCGCAGATTCCTTATG
GACAACTGCCCGCGACAGAAATCCAAGAAGGCAATGACAGCATACGAAAA
AGTCAAATCAATGGCATTCTGCATTCCACCGCGTTCACCNctgaaaattt
tgaaaaaaagacttaGTCGTGTGAGGGTTTCTGTTCAAGAGTGATGCTTA
CGCGGGACggtggtttgttttgattgagaaGGCTTGTTTCTTATGTATGT
TTTGattataattttgataattttggggTCTGGGGCTGAAATATTAGGTG
TGTTGTGGGTGAAAAAAGGCTTGGGATGAGGTATCTAACTTTGTTCTAAa
atgtttgtttatatttttctatttacagagaaaaagtataaaaatgaaaa
atttaaaaagaaagaataacAATGCAAGGGTCACACTGGTTCACTCTTGT
GAAATGAGGGCCCTTCATCAAAAGGCTGGTGCAANGTGTAATCAAAGTGA
TTCAAGGAAGAGGACGTCGTACAAAATACTAATGAAAAATACAGGCGCAA
ATCGAAGAGACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCT
GTTGTGGGATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTC
TCCAAAGGCTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATG
TACTCATGTCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCA
TTGACTTTCGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGG
CTTGCCCATTCTTTTGTTtactgtttactttttatttctaatctgaaaaa
ggaaaaaaacaaacaaactataCTTGTAAATATATGTGTGTATATGTGCT
TATAAAATGTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACC
TTGTTCAGATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGG
CTTCTTGAGGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcgg
ggaaaatcggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGC
GGAAATTGCATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAAC
AACATGgctccttttcaaaaaaatttttttggttatGCATAGGGGAACCT
CtgctcaaatttttatttttttaagacaATCCTGGACATAACTATTTgtc
caccccctccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCA
AATTTCATCCCTCCAACATTGAAAGTGGGGGAGGGGGGGACTCAGCATGG
GGAAATGAGTAGTCGGACAGCAGTTATGTCCACG Run BLAST on NCBI transcript from alignment at scaffold_365:187249..190924+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062477 ID=TCONS_00062477|Name=TCONS_00062477|organism=Clytia hemisphaerica|type=transcript|length=3676bp|location=Sequence derived from alignment at scaffold_365:187249..190924+ (Clytia hemisphaerica)
CCTGGACATAACTATTTgtccaccccctccccccatcTTCAGTGTTGATG
TGTAGTTGGTGGAACTTGCAAATTTCATCCCTCCAACATTNGCCGTACTT
TGGAAGCATCACAGCTGAAAAGATGGCAACCATCGTCGCAGACCATTTCG
ATACGGCATTTTTAAAGAGTTCCAACCCTATAACCCGCAGATTCCTTATG
GACAACTGCCCGCGACAGAAATCCAAGAAGGCAATGACAGCATACGAAAA
AGTCAAATCAATGGCATTCTGCATTCCACCGCGTTCACCNctgaaaattt
tgaaaaaaagacttaGTCGTGTGAGGGTTTCTGTTCAAGAGTGATGCTTA
CGCGGGACggtggtttgttttgattgagaaGGCTTGTTTCTTATGTATGT
TTTGattataattttgataattttggggTCTGGGGCTGAAATATTAGGTG
TGTTGTGGGTGAAAAAAGGCTTGGGATGAGGTATCTAACTTTGTTCTAAa
atgtttgtttatatttttctatttacagagaaaaagtataaaaatgaaaa
atttaaaaagaaagaataacAATGCAAGGGTCACACTGGTTCACTCTTGT
GAAATGAGGGCCCTTCATCAAAAGGCTGGTGCAANGTGTAATCAAAGTGA
TTCAAGGAAGAGGACGTCGTACAAAATACTAATGAAAAATACAGGTATTT
ATATACTATTTCAATATATAAAACTGTTTTCATTTATTCACTGCATGTTT
CAGGCTAGGAAACTGAAAAAATAATCTGACACGACCCAACTTTTTTTCAA
CATGACCCCAATTTTTGTGAACACGACCCAACCTTTTTTGTCTGAATTAG
GCCTGTATAGGCTGAAATCCAACACGACCCGACACGACCCAACTTTTTCT
ATTAAAGAATATAGACTATATTCTTTAATAGAAAAAGTTGGGTCGTGTCG
GGTCGTGTTGGATTTCCACTTTTACCattgtaaaataaaagaaaaaaatg
ggtcgcgtgaaaaaaatttgggtcgCATTGAAAAAAAGTTGGATTATATA
TGACTGGCAACATCTGAAACAACTCAAGTGGCTGGGATGGCATATATGAC
TtactcaaatttcaaaatttgttcaCGATTTAAAAATAATACCGCTTTTT
GAttatgaaaatctaaaaacgaTCAAAAGATTATGCGTGAAATTGACTGA
CTATGAAAACCTGATccaaaagataattttaaaagctaACTTCAACTCTA
AACACTGAAAAGGCAGGCTTAGcttcaaaacaatgaaaaagtcACTGTGA
AGTTTATAATCCAAAAATTATAATCCCAAAATTATATCGTGTTTCgcatt
ataaaaacaataacaaaaaagttaatgcAAAGTTATAATCTAAAAATTAT
ATCGTGTTTCGCatatcaaaacaataacaaaaaagttaaagcGAAGTTAT
AATCCAAAAATTATATCGTGTTTCGcatataaaaacaataacaaaaaagt
taaCGCAAAGTTATAATCCAAAAATTATATCGTGTTTcggtttaaaaaaa
tcaatacaAACAGTGTTTAAACGTTGTTTAAGAATCAAGTTCCTGACCTT
TGAAGATTAAATCCGCAAAGCAGCGAGGACAGGGTAAAACAATTCTGGGA
TTCTCAACTTTTTTGGTGAAAGTAAAGACTTGCCACCGTGTGTCCATCAT
GGCAGTCTCTCCAGGGTCTTTAGAGTTTCCTTTGCCGACATATTCAAACG
GTCGGATACTCGTAGAAAAAAAAGGTACGGAATTTGACCTTTCAATGGTG
AGGTCTGTTGCAAATGTATTTTTCGGGCGGGGTAAATTCACGGTGTCTCC
CTCCAATAAAAGTAAAAAGTCCTTCCAATCAATACACTCCGCAGACCATC
TGAAATCATTTAAAAGGGCAACTTCTTTGTCTTCCAAGCTAACCCACGCA
TATTTTGTGTTTGACGGGTTCGCAAACGCGTCGTAAACCAATTGCAAAGG
GGTGAGCAAGAACGACTTACCACAAGTTGATGGACCAACAATCAAAACAT
TGTTTCCCTTGCCCCTTCCATTTTTAAGCGCATTACGCATTGCAgcagca
aaaacataaacatttaCAGAATTTGACTGTAAGATGCTGACTGCACATCT
CAGCCACTCGTGTTGGATACAACTTTCAGCGCATGGCCCTTGAAAAGCAT
CATTTAGAATTTCCATGCGCGTTTTCTTTCTTCGCTCAAGAATTGCACCG
GCCTCTTCCATTTCCCATGTTGTCGCTATTAATTCGTTTACAAATTTTGT
GGAGTGACCTACAACCCACGCTTTAAGGTCTCGCTCACCATTCTTAGCGC
GTACATTAGCAATATGCAGAAGGACTGTTCTTGACCTTATGCCTTCCTTT
ACTATAAATTCAGATACCTCATAAGGCTTAAGCTTGTCTGGTGCAAAAAA
CTCCTCCTTCTCTTCTTCGCTGTCCTGTCCTGAGTCTGAAACCTCGAGCA
AATCGAATGAGTCTGAATGACTTGAATTACTTTCCCCCTGttctttttca
ctttcactAGTAGAATCATCAATAAACTTAAGTCTTTTCAATGCCTTTGA
CTTCTTTTTACTTCCTCCCTGCTTGCTGCTGCTGGCTGAGTTCTGACTGA
ACTTGCGCATAGCCTTTGAGGTTTTCGGGGTTCTAATCCGTGTCATCGGT
GAGTGACCTTCACTATGAAGTACCTCGTTACCAGGCTTGTTTTTAGAAAT
GTACCTGTAGGCCGCGACATAGCCTAAGCTCTTGATCTTGAAATGAATCG
acactttgaaagtttttaaaaaatatttctttacagGCGCAAATCGAAGA
GACCTGTTGAAGCTGATGGCCATGTGGAAGTGCTTACCACCTGTTGTGGG
ATGATCCTCGATACAGCAAGCCCACTCAACAATAAATCTTTCTCCAAAGG
CTTTGACGATTTGTTCGGAAAAACTTTCACGGGTTGGGAATGTACTCATG
TCTGCTTTGCTATACGTTATAAGAAACACCCTTCTCTGATCATTGACTTT
CGGTTTGCTAATTGGTTCATTCTCAGGTTTTGTCTTTTTAGGCTTGCCCA
TTCTTTTGTTtactgtttactttttatttctaatctgaaaaaggaaaaaa
acaaacaaactataCTTGTAAATATATGTGTGTATATGTGCTTATAAAAT
GTAAATAGACAATATTTTACATACTTTAGGGATGCTTATACCTTGTTCAG
ATTTATTAGGCACTtgtaatttgaaagaaaattctcCAGAGGCTTCTTGA
GGGATGCCGAGGGTCTTTTAACCAGGGAAAATTCaaaatcggggaaaatc
ggggaaaatcgggaaatcaggAAAATCGGGTTCGAATCCCGCGGAAATTG
CATTCTGGGATATTTTGAATTCGCACATGGCCTCGTGGAAACAACATGgc
tccttttcaaaaaaatttttttggttatGCATAGGGGAACCTCtgctcaa
atttttatttttttaagacaATCCTGGACATAACTATTTgtccaccccct
ccccccatcTTCAGTGTTGATGTGTAGTTGGTGGAACTTGCAAATTTCAT
CCCTCCAACATTGAAAGTGGGGGAGGGGGGGACTCAGCATGGGGAAATGA
GTAGTCGGACAGCAGTTATGTCCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062477-exon-scaffold_365-1491911889:187249..187942 | TCONS_00062477-exon-scaffold_365-1491911889:187249..187942 | Clytia hemisphaerica | exon |
| TCONS_00062477-exon-scaffold_365-1510915933:187249..187942 | TCONS_00062477-exon-scaffold_365-1510915933:187249..187942 | Clytia hemisphaerica | exon |
| TCONS_00062477-exon-scaffold_365-1575043694:187249..187942 | TCONS_00062477-exon-scaffold_365-1575043694:187249..187942 | Clytia hemisphaerica | exon |
| TCONS_00062477-exon-scaffold_365-1491911889:190085..190924 | TCONS_00062477-exon-scaffold_365-1491911889:190085..190924 | Clytia hemisphaerica | exon |
| TCONS_00062477-exon-scaffold_365-1510915933:190085..190924 | TCONS_00062477-exon-scaffold_365-1510915933:190085..190924 | Clytia hemisphaerica | exon |
| TCONS_00062477-exon-scaffold_365-1575043694:190085..190924 | TCONS_00062477-exon-scaffold_365-1575043694:190085..190924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_365 | supercontig | scaffold_365:187249..190924 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR022690 | Gemini_AL1_REP_cat-dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006260 | DNA replication |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006260 |
DNA replication |
Blast
The following BLAST results are available for this feature:
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