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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062389 ID=TCONS_00062389|Name=TCONS_00062389|organism=Clytia hemisphaerica|type=transcript|length=2284bpRun BLAST on NCBI protein sequence of TCONS_00062389-protein >TCONS_00062389-protein ID=TCONS_00062389-protein|Name=TCONS_00062389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=739bp MEPTPPKGSRNKRFAQNRPFYESSKKTSAEIISEARSTVRPLQTRRPETPRun BLAST on NCBI transcript from alignment at scaffold_364:265201..276761+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062389 ID=TCONS_00062389|Name=TCONS_00062389|organism=Clytia hemisphaerica|type=transcript|length=11561bp|location=Sequence derived from alignment at scaffold_364:265201..276761+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_364:265201..276761+ >TCONS_00062389 ID=TCONS_00062389|Name=TCONS_00062389|organism=Clytia hemisphaerica|type=CDS|length=33255bp|location=Sequence derived from alignment at scaffold_364:265201..276761+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062389 vs. Swiss-Prot (Human)
Match: ARMC2 (Armadillo repeat-containing protein 2 OS=Homo sapiens GN=ARMC2 PE=2 SV=4) HSP 1 Score: 197.593 bits (501), Expect = 5.379e-53 Identity = 135/496 (27.22%), Postives = 251/496 (50.60%), Query Frame = 1
Query: 781 FYNTNIEPLINQMHLNYEYGDIESLLVNLDVLWRVLEVSNMVGQNAKIAREHRAAILTKLSSYVNNKNALLQLRICKLYLGLKVTKRNLSAVCKSFYQVTKNEKNDDMVLQEKMIEPILTILNNPEQVDSTTDLVYLVGALKILS-NQPKCSKEIRXXXXXXXXXXXXQFSVKKYTSAVQIKESNHMLIQASSLLNNLADSATLANQFIENNILQLLMDLMKARLDDVDLIMPIASIFSKLTISESICNNVVEVESNPGLLMNTLIKHTNTQEIVVRFGYAFGNMANHSPKFRDIILSSNDMTKNFVKVIR-FYTKKLRKDRSQTDLTE---SSKECEEDEDVLVKLIRVIANLSITEEGAILFSNNEELIQVILALLENCDLLKLSQELIINTSATVNNMSFFNDPDSILVKNTETFTRAFLDIVLTKNQDCCVEAMRALGNFTQSEDSRRLLVEGRGLQAIIMLLDSSSIDLAFCVCGVLINMMVDRSTRTLIK 2253
F+NT I P++ ++ + +IE++ L LE NM+G K R+ +L L V+ + L L++ K+ L LKV+++NL VCK +++++NEKND ++ + ++E +L +L + + + +Y +G++K +S N ++ I + + + Q + + S H+L+Q ++ L NL DS+ + ++F+ + L L M+ D D+ IA IFSKLT C + L +N + K+ Q++VVR + GN+ + + R+ + + + + F+ L + E + + E EDVL+KL RV+AN++I + + N ++ ++L LE L +EL+IN +AT+NN+S++ +SI+ L ++++ N D +EA+R GN +Q D +V+ + ++ LLD+ D+ F CGVL+N+ VD+ R ++K
Sbjct: 268 FWNTRIVPILRELE---KEENIETVCAACTQLHHALEEGNMLGNKFK----GRSILLKTLCKLVDVGSDSLSLKLAKIILALKVSRKNLLNVCKLIFKISRNEKNDSLIQNDSILESLLEVLRSEDLQTNMEAFLYCMGSIKFISGNLGFLNEMISKGAVEILINLIKQINENIKKCGTFLPNSGHLLVQVTATLRNLVDSSLVRSKFLNISALPQLCTAMEQYKGDKDVCTNIARIFSKLTSYRDCCTALASYSRCYALFLNLINKYQKKQDLVVRVVFILGNLTAKNNQAREQFSKEKGSIQTLLSLFQTFHQLDLHSQKPVGQRGEQHRAQRPPSEAEDVLIKLTRVLANIAIHPGVGPVLAANPGIVGLLLTTLEY-KSLDDCEELVINATATINNLSYYQVKNSIIQDKKLYIAELLLKLLVSNNMDGILEAVRVFGNLSQDHDVCDFIVQNNVHRFMMALLDAQHQDICFSACGVLLNLTVDKDKRVILK 755 The following BLAST results are available for this feature:
BLAST of TCONS_00062389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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