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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=transcript|length=1566bp
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC
AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG
ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT
CCAAAAGCGAGATTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGAT
GATGGAAGATGGTTACAATACGtttcaaatccaaaaagaagTTCGGAATA
TGAAGTTAGATTTTGAGGACCAGATGAGACTGAAAACCGATCAGATCATG
AAGATGGGAGACATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAA
CTCAACTTTGAAGAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAG
TGGAAGAAAGACTCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGA
GACGCAGAAATCAAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGA
TGAAAAACTGGCAAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATC
TCAATAAGTTTAAAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAA
TCAGTCGATGAAAAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGA
TGAAAAGATTGTCAAAATTGaagcaaaattggaaaaaaatgaaagaagaa
cAAAGGAAAACGAAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATC
AAAGACCAGCAATTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAA
GATGGCTCAAAGTCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAA
TTACCGATTTTGTCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGA
ATCCATTCACCCTCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAA
AGTGTATTTGAATGGGAATGGAAACTATACTGGAACACACATTACCGCAA
CTTTCGACCTCGTTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATG
AGCTATGACCGTTTctctttcaaattttgcatCAATGGTGCTGATATCGC
ATCACAGACTATCAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATT
ACACACGGCCCGAAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACT
ATCAGCCACCGCAAATTGCCGAAAATCTTTGAAGACGATACTATCACTTT
CATATTTGAGATTGAGTAAAATTGTAATCAGCAACAATttaatatgaaat
ttttttctcgatcaGAAAGGAGGGAGAGAACGAAGAGGAGCCGAGGAGCT
AAGCTTTCTAGCTTTCCCTCTCAAATTAGATGAACGCTACCACAAGCAAG
AATATTTTAGCTCATGCAAAATCGGAAACAATGTGACTTATCCCTCAAAA
ATGCTATAAACAATTCTTTCAGGGAATAACTGTCTTTAAATGAAAAGTTT
TGAGCtgtaaatattatttttaattgtatttttAAACAATCTTTTGGAAA
TGAATAAATGATTGTA Run BLAST on NCBI protein sequence of TCONS_00062378-protein >TCONS_00062378-protein ID=TCONS_00062378-protein|Name=TCONS_00062378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
KKQYKTTKFRYFWHLIARRIANKRTMDRRSLSFDHSCSEGEEEDCFQDED
PKARFERYLKSFQSSKMMEDGYNTFQIQKEVRNMKLDFEDQMRLKTDQIM
KMGDILNKIRNENEETNSTLKKQLKMKDERLIKVEERLRLNEEVLVKMRR
DAEIKEIRITEQLKTKDEKLAKLERKLKDTKENLNKFKAENEAVLHRLEK
SVDEKNTRFSIQMEAKDEKIVKIEAKLEKNERRTKENEEDLLQLRDECGI
KDQQLAVLDRGLTMSKKMAQSLLTTPQCPFTWEITDFVSKFDDAREFNNR
IHSPSFFCLEGYKGMLKVYLNGNGNYTGTHITATFDLVPGPFDDMLTWPM
SYDRFSFKFCINGADIASQTIKRSAGEGRWKDDYTRPEDEQKGSGGWGTT
ISHRKLPKIFEDDTITFIFEIE Run BLAST on NCBI transcript from alignment at scaffold_364:170786..174218+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=transcript|length=3433bp|location=Sequence derived from alignment at scaffold_364:170786..174218+ (Clytia hemisphaerica)
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC
AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG
ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT
CCAAAAGCGAGATTTGAAAGGTTGGTCTAATTTATTTCCTAACCTccctg
gtacacaacgttgttgaACGTGCATCAAACGATATGGATGAAAGATAAGA
CCATGTTGTGTGTCAGCGTGATGAAACTTCATGTCGGGTCCAGTTTCAGA
AAGCGTTATagtaatgggccattccattaaatttccataccgGGGTTGGC
Aaaccttttcaagtaaaaaaaaaatttgaaaatgtgtggataccccctgg
aaaatggaaatatttgtaaaaagacccttggaaaatttcttttcatacct
taaagtgatgGTGGACGAATTGAAATCAGTCTATTATAACCCCCTAGAAT
TTTcgatatatttttattacccccttgaaaaatgaaaaagaaacactctt
taagaccccctggaaattctgctcgaattacccctggaaatgttcgtcca
cccccctatGGAATGGAATGTCAACACTTTATTTAGTGGTACTTCTCCAG
ACACTTTATATTTACCACTTCCTCGATTTGATAATCTATTTCTTGAGCAA
TAAGGTGCTATTTTCCCCTGTGATACCTAAATGTAActtattttagattt
taagaTCTAATGGATATCCGTCTTATAGTGAAGTAAATGAAGACGTCTCA
AAATTATGTATAATTCTCACAAATTTCAAGATTATGTCCTAAAATTGCTA
TGTAAAATCCGTTTTCCGTCCTAGACCAAAAACTACTGACCACTGTTGAT
AGttcctaaaaagaaattccttTGTGACTAACTTGATTACCTCTCTCTGT
AGTTTCCTGTATATTTTAGTATAAAACTAACATCCCAAATAAGActgctt
tttcatttttgagatagcattataaaattattatttgaCAGTAAAACAAA
ATTCGGTACAGTTTTGCATCCAAGAGATCTTAAGATATTTGAAGCATAGT
CATTAGCTGACACGGAGTTTTATTGTGTTAGTTTGATTCGGGGCCAAGTC
TGCTAAATACCCCCAAATTAACCAATCACATTCATTATATTCTCCCTTTT
TTTGAGTGCAAACCTCACTGTAAATAAACTAATCGCTAACGCGTGCCATC
TTTTCAGATATTTGAAATCATTCCAATCAAGCAAGATGATGGAAGATGGT
TACAATACGtttcaaatccaaaaagaagTTCGGAATATGAAGTTAGATTT
TGAGGACCAGATGAGACTGAAAACCGATCAGATCATGAAGATGGGAGACA
TCTTGAATAAAATACGGAACGAAAATGAAGAGACCAACTCAACTTTGAAG
AAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAGTGGAAGAAAGGTA
ATGTCTAGTCTATGGAACCTCAATATGGAATCTCTTGCactttaaaaccg
caagtgctttaaagtacggttagaaagtagagttttaacactctgagttt
taacatcaGACTTTCGACTTTCGACCTTAGGAtatcaggatctaaaagct
caaaaatgttccaaaataGCTGAGaacatagcctggaagccacttaaccc
ctcccaaagcGAAAATCCCCTGAAACAAAGTAGAAGTACTGAAATTGCGA
TTCTCACGCGAGCtttgaattctgaaaaatacacaaaattgccaatatat
ttcggcactGGTTGTAGCTTATAGCGTTGTTCTAACGTTCATTAAACGTT
ATGGTCCCAAGAACGTAGCGTGAACTATCTGGGAACATTCCGAGTAATCG
GTATAGTGATTAAATGTTTAACTCGGGTTGAGATGAAAACTTTCTTCGAA
ATCCCGatgaggatagaaattctattgttccaaacacGAAAAATCCAGTG
GAGATGAATGAATTTGAATGAACTTCCCAGTGAGGGTATTTCTCCCACAG
GGGAAGAAGTTTTGGCCAAGTTTTCCTGAAGGGCTGgtgtcccaccgggt
ctgtgacactgAGGTGTATCTTGACTTTATCATATCCTTTTCTTAGGNTG
AACTTCCCAGTGAGGGTATTTCTACCACCGGGGAAGAAGTTTTGGCCAAG
TTTTCCTGAAGGACTGgtgtcccaccgggtctgtgacactgAGGTGTATC
TTGATTTTTATCATATCCTTTTCTTAGACTCAGACTGAATGAAGAAGTTT
TGGTCAAAATGAGAAGAGACGCAGAAATCAAAGAAATCAGAATTACAGAA
CAACTAAAAACCAAAGATGAAAAACTGGCAAAGTTGGAACGAAAATTGAA
AGACACCAAGGAGAATCTCAATAAGTTTAAAGCAGAGAATGAAGCTGTTT
TGCACCGTTTGGAAAAATCAGTCGATGAAAAAAACACTCGGTTTAGTATA
CAAATGGAGGCAAAGGATGAAAAGATTGTCAAAATTGaagcaaaattgga
aaaaaatgaaagaagaacAAAGGAAAACGAAGAAGATTTGCTTCAATTGA
GGGATGAATGTGGAATCAAAGACCAGCAATTAGCTGTGCTTGACAGAGGT
TTGACAATGAGTAAAAAGATGGCTCAAAGTCTGTTAACCACACCTCAATG
TCCATTCACGTGGGAAATTACCGATTTTGTCAGCAAGTTTGATGATGCTA
GAGAATTCAATAATCGAATCCATTCACCCTCGTTCTTCTGTTTGGAAGGT
TATAAAGGAATGCTGAAAGTGTATTTGAATGGGAATGGAAACTATACTGG
AACACACATTACCGCAACTTTCGACCTCGTTCCAGGCCCTTTTGATGACA
TGCTTACCTGGCCAATGAGCTATGACCGTTTctctttcaaattttgcatC
AATGGTGCTGATATCGCATCACAGACTATCAAAAGGTCTGCAGGTGAGGG
CCGTTGGAAGGACGATTACACACGGCCCGAAGATGAGCAGAAAGGAAGTG
GCGGTTGGGGGACAACTATCAGCCACCGCAAATTGCCGAAAATCTTTGAA
GACGATACTATCACTTTCATATTTGAGATTGAGTAAAATTGTAATCAGCA
ACAATttaatatgaaatttttttctcgatcaGAAAGGAGGGAGAGAACGA
AGAGGAGCCGAGGAGCTAAGCTTTCTAGCTTTCCCTCTCAAATTAGATGA
ACGCTACCACAAGCAAGAATATTTTAGCTCATGCAAAATCGGAAACAATG
TGACTTATCCCTCAAAAATGCTATAAACAATTCTTTCAGGGAATAACTGT
CTTTAAATGAAAAGTTTTGAGCtgtaaatattatttttaattgtattttt
AAACAATCTTTTGGAAATGAATAAATGATTGTA Coding sequence (CDS) from alignment at scaffold_364:170786..174218+ >TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=CDS|length=3807bp|location=Sequence derived from alignment at scaffold_364:170786..174218+ (Clytia hemisphaerica)
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC
AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG
ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT
CCAAAAGCGAGATTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGAT
GATGGAAGATGGTTACAATACGtttcaaatccaaaaagaagTTCGGAATA
TGAAGTTAGATTTTGAGGACCAGATGAGACTGAAAACCGATCAGATCATG
AAGATGGGAGACATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAA
CTCAACTTTGAAGAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAG
TGGAAGAAAGACTCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGA
GACGCAGAAATCAAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGA
TGAAAAACTGGCAAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATC
TCAATAAGTTTAAAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAA
TCAGTCGATGAAAAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGA
TGAAAAGATTGTCAAAATTGaagcaaaattggaaaaaaatgaaagaagaa
cAAAGGAAAACGAAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATC
AAAGACCAGCAATTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAA
GATGGCTCAAAGTCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAA
TTACCGATTTTGTCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGA
ATCCATTCACCCTCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAA
AGTGTATTTGAATGGGAATGGAAACTATACTGGAACACACATTACCGCAA
CTTTCGACCTCGTTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATG
AGCTATGACCGTTTctctttcaaattttgcatCAATGGTGCTGATATCGC
ATCACAGACTATCAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATT
ACACACGGCCCGAAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACT
ATCAGCCACCGCAAATTGCCGAAAATCTTTGAAGACGATACTATCACTTT
CATATTTGAGATTGAGTAAAAAAAGCAATATAAAACCACAAAGTTTCGAT
ACTTTTGGCATTTGATTGCAAGAAGGATAGCCAATAAAAGAACAATGGAT
AGGCGATCTCTTTCATTCGATCATTCTTGCTcggaaggagaagaagaaga
ttgTTTCCAAGACGAAGATCCAAAAGCGAGATTTGAAAGATATTTGAAAT
CATTCCAATCAAGCAAGATGATGGAAGATGGTTACAATACGtttcaaatc
caaaaagaagTTCGGAATATGAAGTTAGATTTTGAGGACCAGATGAGACT
GAAAACCGATCAGATCATGAAGATGGGAGACATCTTGAATAAAATACGGA
ACGAAAATGAAGAGACCAACTCAACTTTGAAGAAACAGTTGAAAATGAAA
GACGAGAGGCTAATCAAAGTGGAAGAAAGACTCAGACTGAATGAAGAAGT
TTTGGTCAAAATGAGAAGAGACGCAGAAATCAAAGAAATCAGAATTACAG
AACAACTAAAAACCAAAGATGAAAAACTGGCAAAGTTGGAACGAAAATTG
AAAGACACCAAGGAGAATCTCAATAAGTTTAAAGCAGAGAATGAAGCTGT
TTTGCACCGTTTGGAAAAATCAGTCGATGAAAAAAACACTCGGTTTAGTA
TACAAATGGAGGCAAAGGATGAAAAGATTGTCAAAATTGaagcaaaattg
gaaaaaaatgaaagaagaacAAAGGAAAACGAAGAAGATTTGCTTCAATT
GAGGGATGAATGTGGAATCAAAGACCAGCAATTAGCTGTGCTTGACAGAG
GTTTGACAATGAGTAAAAAGATGGCTCAAAGTCTGTTAACCACACCTCAA
TGTCCATTCACGTGGGAAATTACCGATTTTGTCAGCAAGTTTGATGATGC
TAGAGAATTCAATAATCGAATCCATTCACCCTCGTTCTTCTGTTTGGAAG
GTTATAAAGGAATGCTGAAAGTGTATTTGAATGGGAATGGAAACTATACT
GGAACACACATTACCGCAACTTTCGACCTCGTTCCAGGCCCTTTTGATGA
CATGCTTACCTGGCCAATGAGCTATGACCGTTTctctttcaaattttgca
tCAATGGTGCTGATATCGCATCACAGACTATCAAAAGGTCTGCAGGTGAG
GGCCGTTGGAAGGACGATTACACACGGCCCGAAGATGAGCAGAAAGGAAG
TGGCGGTTGGGGGACAACTATCAGCCACCGCAAATTGCCGAAAATCTTTG
AAGACGATACTATCACTTTCATATTTGAGATTGAGTAAAAAAAGCAATAT
AAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGCAAGAAGGATAGC
CAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCGATCATTCTTGCT
cggaaggagaagaagaagattgTTTCCAAGACGAAGATCCAAAAGCGAGA
TTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGATGATGGAAGATGG
TTACAATACGtttcaaatccaaaaagaagTTCGGAATATGAAGTTAGATT
TTGAGGACCAGATGAGACTGAAAACCGATCAGATCATGAAGATGGGAGAC
ATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAACTCAACTTTGAA
GAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAGTGGAAGAAAGAC
TCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGAGACGCAGAAATC
AAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGATGAAAAACTGGC
AAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATCTCAATAAGTTTA
AAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAATCAGTCGATGAA
AAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGATGAAAAGATTGT
CAAAATTGaagcaaaattggaaaaaaatgaaagaagaacAAAGGAAAACG
AAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATCAAAGACCAGCAA
TTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAAGATGGCTCAAAG
TCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAATTACCGATTTTG
TCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGAATCCATTCACCC
TCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAAAGTGTATTTGAA
TGGGAATGGAAACTATACTGGAACACACATTACCGCAACTTTCGACCTCG
TTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATGAGCTATGACCGT
TTctctttcaaattttgcatCAATGGTGCTGATATCGCATCACAGACTAT
CAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATTACACACGGCCCG
AAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACTATCAGCCACCGC
AAATTGCCGAAAATCTTTGAAGACGATACTATCACTTTCATATTTGAGAT
TGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062378-exon-scaffold_364-1491911889:170786..170955 | TCONS_00062378-exon-scaffold_364-1491911889:170786..170955 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1510915933:170786..170955 | TCONS_00062378-exon-scaffold_364-1510915933:170786..170955 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1575043694:170786..170955 | TCONS_00062378-exon-scaffold_364-1575043694:170786..170955 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1491911889:172043..172282 | TCONS_00062378-exon-scaffold_364-1491911889:172043..172282 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1510915933:172043..172282 | TCONS_00062378-exon-scaffold_364-1510915933:172043..172282 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1575043694:172043..172282 | TCONS_00062378-exon-scaffold_364-1575043694:172043..172282 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1491911889:173063..174218 | TCONS_00062378-exon-scaffold_364-1491911889:173063..174218 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1510915933:173063..174218 | TCONS_00062378-exon-scaffold_364-1510915933:173063..174218 | Clytia hemisphaerica | exon |
| TCONS_00062378-exon-scaffold_364-1575043694:173063..174218 | TCONS_00062378-exon-scaffold_364-1575043694:173063..174218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:170786..174218 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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