TCONS_00062378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062378
Unique NameTCONS_00062378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=transcript|length=1566bp
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC
AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG
ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT
CCAAAAGCGAGATTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGAT
GATGGAAGATGGTTACAATACGtttcaaatccaaaaagaagTTCGGAATA
TGAAGTTAGATTTTGAGGACCAGATGAGACTGAAAACCGATCAGATCATG
AAGATGGGAGACATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAA
CTCAACTTTGAAGAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAG
TGGAAGAAAGACTCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGA
GACGCAGAAATCAAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGA
TGAAAAACTGGCAAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATC
TCAATAAGTTTAAAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAA
TCAGTCGATGAAAAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGA
TGAAAAGATTGTCAAAATTGaagcaaaattggaaaaaaatgaaagaagaa
cAAAGGAAAACGAAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATC
AAAGACCAGCAATTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAA
GATGGCTCAAAGTCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAA
TTACCGATTTTGTCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGA
ATCCATTCACCCTCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAA
AGTGTATTTGAATGGGAATGGAAACTATACTGGAACACACATTACCGCAA
CTTTCGACCTCGTTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATG
AGCTATGACCGTTTctctttcaaattttgcatCAATGGTGCTGATATCGC
ATCACAGACTATCAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATT
ACACACGGCCCGAAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACT
ATCAGCCACCGCAAATTGCCGAAAATCTTTGAAGACGATACTATCACTTT
CATATTTGAGATTGAGTAAAATTGTAATCAGCAACAATttaatatgaaat
ttttttctcgatcaGAAAGGAGGGAGAGAACGAAGAGGAGCCGAGGAGCT
AAGCTTTCTAGCTTTCCCTCTCAAATTAGATGAACGCTACCACAAGCAAG
AATATTTTAGCTCATGCAAAATCGGAAACAATGTGACTTATCCCTCAAAA
ATGCTATAAACAATTCTTTCAGGGAATAACTGTCTTTAAATGAAAAGTTT
TGAGCtgtaaatattatttttaattgtatttttAAACAATCTTTTGGAAA
TGAATAAATGATTGTA
Run BLAST on NCBI

protein sequence of TCONS_00062378-protein

>TCONS_00062378-protein ID=TCONS_00062378-protein|Name=TCONS_00062378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
KKQYKTTKFRYFWHLIARRIANKRTMDRRSLSFDHSCSEGEEEDCFQDED
PKARFERYLKSFQSSKMMEDGYNTFQIQKEVRNMKLDFEDQMRLKTDQIM
KMGDILNKIRNENEETNSTLKKQLKMKDERLIKVEERLRLNEEVLVKMRR
DAEIKEIRITEQLKTKDEKLAKLERKLKDTKENLNKFKAENEAVLHRLEK
SVDEKNTRFSIQMEAKDEKIVKIEAKLEKNERRTKENEEDLLQLRDECGI
KDQQLAVLDRGLTMSKKMAQSLLTTPQCPFTWEITDFVSKFDDAREFNNR
IHSPSFFCLEGYKGMLKVYLNGNGNYTGTHITATFDLVPGPFDDMLTWPM
SYDRFSFKFCINGADIASQTIKRSAGEGRWKDDYTRPEDEQKGSGGWGTT
ISHRKLPKIFEDDTITFIFEIE
Run BLAST on NCBI

transcript from alignment at scaffold_364:170786..174218+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=transcript|length=3433bp|location=Sequence derived from alignment at scaffold_364:170786..174218+ (Clytia hemisphaerica)
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT CCAAAAGCGAGATTTGAAAGGTTGGTCTAATTTATTTCCTAACCTccctg gtacacaacgttgttgaACGTGCATCAAACGATATGGATGAAAGATAAGA CCATGTTGTGTGTCAGCGTGATGAAACTTCATGTCGGGTCCAGTTTCAGA AAGCGTTATagtaatgggccattccattaaatttccataccgGGGTTGGC Aaaccttttcaagtaaaaaaaaaatttgaaaatgtgtggataccccctgg aaaatggaaatatttgtaaaaagacccttggaaaatttcttttcatacct taaagtgatgGTGGACGAATTGAAATCAGTCTATTATAACCCCCTAGAAT TTTcgatatatttttattacccccttgaaaaatgaaaaagaaacactctt taagaccccctggaaattctgctcgaattacccctggaaatgttcgtcca cccccctatGGAATGGAATGTCAACACTTTATTTAGTGGTACTTCTCCAG ACACTTTATATTTACCACTTCCTCGATTTGATAATCTATTTCTTGAGCAA TAAGGTGCTATTTTCCCCTGTGATACCTAAATGTAActtattttagattt taagaTCTAATGGATATCCGTCTTATAGTGAAGTAAATGAAGACGTCTCA AAATTATGTATAATTCTCACAAATTTCAAGATTATGTCCTAAAATTGCTA TGTAAAATCCGTTTTCCGTCCTAGACCAAAAACTACTGACCACTGTTGAT AGttcctaaaaagaaattccttTGTGACTAACTTGATTACCTCTCTCTGT AGTTTCCTGTATATTTTAGTATAAAACTAACATCCCAAATAAGActgctt tttcatttttgagatagcattataaaattattatttgaCAGTAAAACAAA ATTCGGTACAGTTTTGCATCCAAGAGATCTTAAGATATTTGAAGCATAGT CATTAGCTGACACGGAGTTTTATTGTGTTAGTTTGATTCGGGGCCAAGTC TGCTAAATACCCCCAAATTAACCAATCACATTCATTATATTCTCCCTTTT TTTGAGTGCAAACCTCACTGTAAATAAACTAATCGCTAACGCGTGCCATC TTTTCAGATATTTGAAATCATTCCAATCAAGCAAGATGATGGAAGATGGT TACAATACGtttcaaatccaaaaagaagTTCGGAATATGAAGTTAGATTT TGAGGACCAGATGAGACTGAAAACCGATCAGATCATGAAGATGGGAGACA TCTTGAATAAAATACGGAACGAAAATGAAGAGACCAACTCAACTTTGAAG AAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAGTGGAAGAAAGGTA ATGTCTAGTCTATGGAACCTCAATATGGAATCTCTTGCactttaaaaccg caagtgctttaaagtacggttagaaagtagagttttaacactctgagttt taacatcaGACTTTCGACTTTCGACCTTAGGAtatcaggatctaaaagct caaaaatgttccaaaataGCTGAGaacatagcctggaagccacttaaccc ctcccaaagcGAAAATCCCCTGAAACAAAGTAGAAGTACTGAAATTGCGA TTCTCACGCGAGCtttgaattctgaaaaatacacaaaattgccaatatat ttcggcactGGTTGTAGCTTATAGCGTTGTTCTAACGTTCATTAAACGTT ATGGTCCCAAGAACGTAGCGTGAACTATCTGGGAACATTCCGAGTAATCG GTATAGTGATTAAATGTTTAACTCGGGTTGAGATGAAAACTTTCTTCGAA ATCCCGatgaggatagaaattctattgttccaaacacGAAAAATCCAGTG GAGATGAATGAATTTGAATGAACTTCCCAGTGAGGGTATTTCTCCCACAG GGGAAGAAGTTTTGGCCAAGTTTTCCTGAAGGGCTGgtgtcccaccgggt ctgtgacactgAGGTGTATCTTGACTTTATCATATCCTTTTCTTAGGNTG AACTTCCCAGTGAGGGTATTTCTACCACCGGGGAAGAAGTTTTGGCCAAG TTTTCCTGAAGGACTGgtgtcccaccgggtctgtgacactgAGGTGTATC TTGATTTTTATCATATCCTTTTCTTAGACTCAGACTGAATGAAGAAGTTT TGGTCAAAATGAGAAGAGACGCAGAAATCAAAGAAATCAGAATTACAGAA CAACTAAAAACCAAAGATGAAAAACTGGCAAAGTTGGAACGAAAATTGAA AGACACCAAGGAGAATCTCAATAAGTTTAAAGCAGAGAATGAAGCTGTTT TGCACCGTTTGGAAAAATCAGTCGATGAAAAAAACACTCGGTTTAGTATA CAAATGGAGGCAAAGGATGAAAAGATTGTCAAAATTGaagcaaaattgga aaaaaatgaaagaagaacAAAGGAAAACGAAGAAGATTTGCTTCAATTGA GGGATGAATGTGGAATCAAAGACCAGCAATTAGCTGTGCTTGACAGAGGT TTGACAATGAGTAAAAAGATGGCTCAAAGTCTGTTAACCACACCTCAATG TCCATTCACGTGGGAAATTACCGATTTTGTCAGCAAGTTTGATGATGCTA GAGAATTCAATAATCGAATCCATTCACCCTCGTTCTTCTGTTTGGAAGGT TATAAAGGAATGCTGAAAGTGTATTTGAATGGGAATGGAAACTATACTGG AACACACATTACCGCAACTTTCGACCTCGTTCCAGGCCCTTTTGATGACA TGCTTACCTGGCCAATGAGCTATGACCGTTTctctttcaaattttgcatC AATGGTGCTGATATCGCATCACAGACTATCAAAAGGTCTGCAGGTGAGGG CCGTTGGAAGGACGATTACACACGGCCCGAAGATGAGCAGAAAGGAAGTG GCGGTTGGGGGACAACTATCAGCCACCGCAAATTGCCGAAAATCTTTGAA GACGATACTATCACTTTCATATTTGAGATTGAGTAAAATTGTAATCAGCA ACAATttaatatgaaatttttttctcgatcaGAAAGGAGGGAGAGAACGA AGAGGAGCCGAGGAGCTAAGCTTTCTAGCTTTCCCTCTCAAATTAGATGA ACGCTACCACAAGCAAGAATATTTTAGCTCATGCAAAATCGGAAACAATG TGACTTATCCCTCAAAAATGCTATAAACAATTCTTTCAGGGAATAACTGT CTTTAAATGAAAAGTTTTGAGCtgtaaatattatttttaattgtattttt AAACAATCTTTTGGAAATGAATAAATGATTGTA

Coding sequence (CDS) from alignment at scaffold_364:170786..174218+

>TCONS_00062378 ID=TCONS_00062378|Name=TCONS_00062378|organism=Clytia hemisphaerica|type=CDS|length=3807bp|location=Sequence derived from alignment at scaffold_364:170786..174218+ (Clytia hemisphaerica)
AAAAAGCAATATAAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGC
AAGAAGGATAGCCAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCG
ATCATTCTTGCTcggaaggagaagaagaagattgTTTCCAAGACGAAGAT
CCAAAAGCGAGATTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGAT
GATGGAAGATGGTTACAATACGtttcaaatccaaaaagaagTTCGGAATA
TGAAGTTAGATTTTGAGGACCAGATGAGACTGAAAACCGATCAGATCATG
AAGATGGGAGACATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAA
CTCAACTTTGAAGAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAG
TGGAAGAAAGACTCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGA
GACGCAGAAATCAAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGA
TGAAAAACTGGCAAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATC
TCAATAAGTTTAAAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAA
TCAGTCGATGAAAAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGA
TGAAAAGATTGTCAAAATTGaagcaaaattggaaaaaaatgaaagaagaa
cAAAGGAAAACGAAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATC
AAAGACCAGCAATTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAA
GATGGCTCAAAGTCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAA
TTACCGATTTTGTCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGA
ATCCATTCACCCTCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAA
AGTGTATTTGAATGGGAATGGAAACTATACTGGAACACACATTACCGCAA
CTTTCGACCTCGTTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATG
AGCTATGACCGTTTctctttcaaattttgcatCAATGGTGCTGATATCGC
ATCACAGACTATCAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATT
ACACACGGCCCGAAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACT
ATCAGCCACCGCAAATTGCCGAAAATCTTTGAAGACGATACTATCACTTT
CATATTTGAGATTGAGTAAAAAAAGCAATATAAAACCACAAAGTTTCGAT
ACTTTTGGCATTTGATTGCAAGAAGGATAGCCAATAAAAGAACAATGGAT
AGGCGATCTCTTTCATTCGATCATTCTTGCTcggaaggagaagaagaaga
ttgTTTCCAAGACGAAGATCCAAAAGCGAGATTTGAAAGATATTTGAAAT
CATTCCAATCAAGCAAGATGATGGAAGATGGTTACAATACGtttcaaatc
caaaaagaagTTCGGAATATGAAGTTAGATTTTGAGGACCAGATGAGACT
GAAAACCGATCAGATCATGAAGATGGGAGACATCTTGAATAAAATACGGA
ACGAAAATGAAGAGACCAACTCAACTTTGAAGAAACAGTTGAAAATGAAA
GACGAGAGGCTAATCAAAGTGGAAGAAAGACTCAGACTGAATGAAGAAGT
TTTGGTCAAAATGAGAAGAGACGCAGAAATCAAAGAAATCAGAATTACAG
AACAACTAAAAACCAAAGATGAAAAACTGGCAAAGTTGGAACGAAAATTG
AAAGACACCAAGGAGAATCTCAATAAGTTTAAAGCAGAGAATGAAGCTGT
TTTGCACCGTTTGGAAAAATCAGTCGATGAAAAAAACACTCGGTTTAGTA
TACAAATGGAGGCAAAGGATGAAAAGATTGTCAAAATTGaagcaaaattg
gaaaaaaatgaaagaagaacAAAGGAAAACGAAGAAGATTTGCTTCAATT
GAGGGATGAATGTGGAATCAAAGACCAGCAATTAGCTGTGCTTGACAGAG
GTTTGACAATGAGTAAAAAGATGGCTCAAAGTCTGTTAACCACACCTCAA
TGTCCATTCACGTGGGAAATTACCGATTTTGTCAGCAAGTTTGATGATGC
TAGAGAATTCAATAATCGAATCCATTCACCCTCGTTCTTCTGTTTGGAAG
GTTATAAAGGAATGCTGAAAGTGTATTTGAATGGGAATGGAAACTATACT
GGAACACACATTACCGCAACTTTCGACCTCGTTCCAGGCCCTTTTGATGA
CATGCTTACCTGGCCAATGAGCTATGACCGTTTctctttcaaattttgca
tCAATGGTGCTGATATCGCATCACAGACTATCAAAAGGTCTGCAGGTGAG
GGCCGTTGGAAGGACGATTACACACGGCCCGAAGATGAGCAGAAAGGAAG
TGGCGGTTGGGGGACAACTATCAGCCACCGCAAATTGCCGAAAATCTTTG
AAGACGATACTATCACTTTCATATTTGAGATTGAGTAAAAAAAGCAATAT
AAAACCACAAAGTTTCGATACTTTTGGCATTTGATTGCAAGAAGGATAGC
CAATAAAAGAACAATGGATAGGCGATCTCTTTCATTCGATCATTCTTGCT
cggaaggagaagaagaagattgTTTCCAAGACGAAGATCCAAAAGCGAGA
TTTGAAAGATATTTGAAATCATTCCAATCAAGCAAGATGATGGAAGATGG
TTACAATACGtttcaaatccaaaaagaagTTCGGAATATGAAGTTAGATT
TTGAGGACCAGATGAGACTGAAAACCGATCAGATCATGAAGATGGGAGAC
ATCTTGAATAAAATACGGAACGAAAATGAAGAGACCAACTCAACTTTGAA
GAAACAGTTGAAAATGAAAGACGAGAGGCTAATCAAAGTGGAAGAAAGAC
TCAGACTGAATGAAGAAGTTTTGGTCAAAATGAGAAGAGACGCAGAAATC
AAAGAAATCAGAATTACAGAACAACTAAAAACCAAAGATGAAAAACTGGC
AAAGTTGGAACGAAAATTGAAAGACACCAAGGAGAATCTCAATAAGTTTA
AAGCAGAGAATGAAGCTGTTTTGCACCGTTTGGAAAAATCAGTCGATGAA
AAAAACACTCGGTTTAGTATACAAATGGAGGCAAAGGATGAAAAGATTGT
CAAAATTGaagcaaaattggaaaaaaatgaaagaagaacAAAGGAAAACG
AAGAAGATTTGCTTCAATTGAGGGATGAATGTGGAATCAAAGACCAGCAA
TTAGCTGTGCTTGACAGAGGTTTGACAATGAGTAAAAAGATGGCTCAAAG
TCTGTTAACCACACCTCAATGTCCATTCACGTGGGAAATTACCGATTTTG
TCAGCAAGTTTGATGATGCTAGAGAATTCAATAATCGAATCCATTCACCC
TCGTTCTTCTGTTTGGAAGGTTATAAAGGAATGCTGAAAGTGTATTTGAA
TGGGAATGGAAACTATACTGGAACACACATTACCGCAACTTTCGACCTCG
TTCCAGGCCCTTTTGATGACATGCTTACCTGGCCAATGAGCTATGACCGT
TTctctttcaaattttgcatCAATGGTGCTGATATCGCATCACAGACTAT
CAAAAGGTCTGCAGGTGAGGGCCGTTGGAAGGACGATTACACACGGCCCG
AAGATGAGCAGAAAGGAAGTGGCGGTTGGGGGACAACTATCAGCCACCGC
AAATTGCCGAAAATCTTTGAAGACGATACTATCACTTTCATATTTGAGAT
TGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039089XLOC_039089Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062378-proteinTCONS_00062378-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062378-exon-scaffold_364-1491911889:170786..170955TCONS_00062378-exon-scaffold_364-1491911889:170786..170955Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1510915933:170786..170955TCONS_00062378-exon-scaffold_364-1510915933:170786..170955Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1575043694:170786..170955TCONS_00062378-exon-scaffold_364-1575043694:170786..170955Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1491911889:172043..172282TCONS_00062378-exon-scaffold_364-1491911889:172043..172282Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1510915933:172043..172282TCONS_00062378-exon-scaffold_364-1510915933:172043..172282Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1575043694:172043..172282TCONS_00062378-exon-scaffold_364-1575043694:172043..172282Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1491911889:173063..174218TCONS_00062378-exon-scaffold_364-1491911889:173063..174218Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1510915933:173063..174218TCONS_00062378-exon-scaffold_364-1510915933:173063..174218Clytia hemisphaericaexon
TCONS_00062378-exon-scaffold_364-1575043694:173063..174218TCONS_00062378-exon-scaffold_364-1575043694:173063..174218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:170786..174218 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287587 0.331432 0.592037 0.810902 0.070514 0.0557211 0.336126 0.220274 0.3525 0.409339 0.344339 0.348238 45.6601 27.9347 7.11103 20.2012 1.74675 6.43725 0.13896 0.174493 0.126389 0.0739776 0.329741 0.327036 0.14035 0.200414 0.143396 0 0.14509 0.0886945
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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