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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062321 ID=TCONS_00062321|Name=TCONS_00062321|organism=Clytia hemisphaerica|type=transcript|length=1259bp
GTATGATGTGAACACTGAGAAAAGGTAATTATCCATCTTCTTCAATCTCC
ACCGTAAATTTTAAGTTCATATATGGACTTTCTCGTTATCATTTAAAATC
CTGTATTAGTTTTTTTGGTGCATAAAAAGTGACAAATTATACGACAAGAC
CAAACAAAAGTTCAATAGAGTCGTTTCTATTGCTTATTGGATTTAGCAAC
AGAAAAATAGTCTTTTCTTTATCATTCCTGCGGTGTGATTCGAATAGCCA
TTTCAAAGGTTTTCAGGCAATAGCCATCCCCCTTAAAACTATACCAATGT
AATGATAGTCTTCTCATACAATCAGATTGATTGCTGTAATATTTTCCATT
TGGTGTCATATTTGCACAGGAAAAGTACCAAAAACCAGCAATTCTTCCAC
CTGCACAATCATATTGCCCACTCACATCATTATCAATTTCTGGTGTACTA
AAATACATATTATCatgattaagaaaatcattcTTATTTAGTGACTTTCC
CGAGAAAAAAAGACCTGTGTGAagtttatatttattttcttcattttcaa
tattgAAACCTTTGTAAACAACATGTGTGGATTCGCTTTCAAAAGTGGTT
GCCGAAATCTTGAGATAAACGGTTCTGTTTTGGATTGATGTCAAGAAATG
AATATCATTATTCCCTAACCAATATTCACTTTCTGGTTGACCAAAACCTG
TTTTGTATCCTGACCAATTTTGATTGAAGTCAACAGAACCGTCTATTCTC
TTTTGAATGACTGTCCAACCTTCGCTTTTTACATCATCCATATTGCAATA
AACATCTCTTTGTTTTCCGTTGAAAGTGATTTCATAGACACCACTGTTCT
TGTAACCACTTCTGAACCAATCATCACAATCTACGTATGGTTGCTCTGCA
TTATATAATATACTACCGAGCTTGGTGACCAAATGATCGGATATACTTCT
GATCAATCCATATAACTTGCAACTCCATACATCTGTAGACGTTATCATTA
ACTTTTCATATTCAATATAATGACATTTGATAATGATACATTTacgaaaa
caaaaatcaaaatgtgttGATTCCATTTCATGCCAAGGCACTGGTTGTCC
AGAGATTGCCACATTTCTACCGACAAAGCGAAAGCGCACTAGCCCACATC
TAATTCCTTGAGGATTGAAAGTTAAGAGGTATAATAAAGCTATAAGCATC
TTGAAAAGCCAGCGTTTTcctttcaaattgatttttgtgAAGAAGATTTT
GTGcgattt Run BLAST on NCBI protein sequence of TCONS_00062321-protein >TCONS_00062321-protein ID=TCONS_00062321-protein|Name=TCONS_00062321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
KSHKIFFTKINLKGKRWLFKMLIALLYLLTFNPQGIRCGLVRFRFVGRNV
AISGQPVPWHEMESTHFDFCFRKCIIIKCHYIEYEKLMITSTDVWSCKLY
GLIRSISDHLVTKLGSILYNAEQPYVDCDDWFRSGYKNSGVYEITFNGKQ
RDVYCNMDDVKSEGWTVIQKRIDGSVDFNQNWSGYKTGFGQPESEYWLGN
NDIHFLTSIQNRTVYLKISATTFESESTHVVYKGFNIENEENKYKLHTGL
FFSGKSLNKNDFLNHDNMYFSTPEIDNDVSGQYDCAGGRIAGFWYFSCAN
MTPNGKYYSNQSDCMRRLSLHWYSFKGDGYCLKTFEMAIRITPQE Run BLAST on NCBI transcript from alignment at scaffold_362:1023031..1024289 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062321 ID=TCONS_00062321|Name=TCONS_00062321|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_362:1023031..1024289 (Clytia hemisphaerica)
aaatcgCACAAAATCTTCTTcacaaaaatcaatttgaaaggAAAACGCTG
GCTTTTCAAGATGCTTATAGCTTTATTATACCTCTTAACTTTCAATCCTC
AAGGAATTAGATGTGGGCTAGTGCGCTTTCGCTTTGTCGGTAGAAATGTG
GCAATCTCTGGACAACCAGTGCCTTGGCATGAAATGGAATCaacacattt
tgatttttgttttcgtAAATGTATCATTATCAAATGTCATTATATTGAAT
ATGAAAAGTTAATGATAACGTCTACAGATGTATGGAGTTGCAAGTTATAT
GGATTGATCAGAAGTATATCCGATCATTTGGTCACCAAGCTCGGTAGTAT
ATTATATAATGCAGAGCAACCATACGTAGATTGTGATGATTGGTTCAGAA
GTGGTTACAAGAACAGTGGTGTCTATGAAATCACTTTCAACGGAAAACAA
AGAGATGTTTATTGCAATATGGATGATGTAAAAAGCGAAGGTTGGACAGT
CATTCAAAAGAGAATAGACGGTTCTGTTGACTTCAATCAAAATTGGTCAG
GATACAAAACAGGTTTTGGTCAACCAGAAAGTGAATATTGGTTAGGGAAT
AATGATATTCATTTCTTGACATCAATCCAAAACAGAACCGTTTATCTCAA
GATTTCGGCAACCACTTTTGAAAGCGAATCCACACATGTTGTTTACAAAG
GTTTcaatattgaaaatgaagaaaataaatataaactTCACACAGGTCTT
TTTTTCTCGGGAAAGTCACTAAATAAgaatgattttcttaatcatGATAA
TATGTATTTTAGTACACCAGAAATTGATAATGATGTGAGTGGGCAATATG
ATTGTGCAGGTGGAAGAATTGCTGGTTTTTGGTACTTTTCCTGTGCAAAT
ATGACACCAAATGGAAAATATTACAGCAATCAATCTGATTGTATGAGAAG
ACTATCATTACATTGGTATAGTTTTAAGGGGGATGGCTATTGCCTGAAAA
CCTTTGAAATGGCTATTCGAATCACACCGCAGGAATGATAAAGAAAAGAC
TATTTTTCTGTTGCTAAATCCAATAAGCAATAGAAACGACTCTATTGAAC
TTTTGTTTGGTCTTGTCGTATAATTTGTCACTTTTTATGCACCAAAAAAA
CTAATACAGGATTTTAAATGATAACGAGAAAGTCCATATATGAACTTAAA
ATTTACGGTGGAGATTGAAGAAGATGGATAATTACCTTTTCTCAGTGTTC
ACATCATAC Coding sequence (CDS) from alignment at scaffold_362:1023031..1024289 >TCONS_00062321 ID=TCONS_00062321|Name=TCONS_00062321|organism=Clytia hemisphaerica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_362:1023031..1024289 (Clytia hemisphaerica)
aaatcgCACAAAATCTTCTTcacaaaaatcaatttgaaaggAAAACGCTG
GCTTTTCAAGATGCTTATAGCTTTATTATACCTCTTAACTTTCAATCCTC
AAGGAATTAGATGTGGGCTAGTGCGCTTTCGCTTTGTCGGTAGAAATGTG
GCAATCTCTGGACAACCAGTGCCTTGGCATGAAATGGAATCaacacattt
tgatttttgttttcgtAAATGTATCATTATCAAATGTCATTATATTGAAT
ATGAAAAGTTAATGATAACGTCTACAGATGTATGGAGTTGCAAGTTATAT
GGATTGATCAGAAGTATATCCGATCATTTGGTCACCAAGCTCGGTAGTAT
ATTATATAATGCAGAGCAACCATACGTAGATTGTGATGATTGGTTCAGAA
GTGGTTACAAGAACAGTGGTGTCTATGAAATCACTTTCAACGGAAAACAA
AGAGATGTTTATTGCAATATGGATGATGTAAAAAGCGAAGGTTGGACAGT
CATTCAAAAGAGAATAGACGGTTCTGTTGACTTCAATCAAAATTGGTCAG
GATACAAAACAGGTTTTGGTCAACCAGAAAGTGAATATTGGTTAGGGAAT
AATGATATTCATTTCTTGACATCAATCCAAAACAGAACCGTTTATCTCAA
GATTTCGGCAACCACTTTTGAAAGCGAATCCACACATGTTGTTTACAAAG
GTTTcaatattgaaaatgaagaaaataaatataaactTCACACAGGTCTT
TTTTTCTCGGGAAAGTCACTAAATAAgaatgattttcttaatcatGATAA
TATGTATTTTAGTACACCAGAAATTGATAATGATGTGAGTGGGCAATATG
ATTGTGCAGGTGGAAGAATTGCTGGTTTTTGGTACTTTTCCTGTGCAAAT
ATGACACCAAATGGAAAATATTACAGCAATCAATCTGATTGTATGAGAAG
ACTATCATTACATTGGTATAGTTTTAAGGGGGATGGCTATTGCCTGAAAA
CCTTTGAAATGGCTATTCGAATCACACCGCAGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062321-exon-scaffold_362-1491911889:1023031..1024289 | TCONS_00062321-exon-scaffold_362-1491911889:1023031..1024289 | Clytia hemisphaerica | exon |
| TCONS_00062321-exon-scaffold_362-1510915933:1023031..1024289 | TCONS_00062321-exon-scaffold_362-1510915933:1023031..1024289 | Clytia hemisphaerica | exon |
| TCONS_00062321-exon-scaffold_362-1575043694:1023031..1024289 | TCONS_00062321-exon-scaffold_362-1575043694:1023031..1024289 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:1023031..1024289 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062321 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.970e-35 Identity = 89/242 (36.78%), Postives = 124/242 (51.24%), Query Frame = -1
Query: 240 HLVTKLGSILYNA----EQPYVDCDDWFRSGYKNSGVYEITFNG--KQRDVYCNMDDVKSEGWTVIQKRIDGSVDFNQNWSGYKTGFGQPESEYWLGNNDIHFLTSIQNRTVYLKISATTFESESTHVVYKGFNIENEENKYKL----HTGLFFSGKSLNKNDFLNHDNMYFSTPEIDNDVSGQYDCAGGRIAGFWYFSCANMTPNGKYYSNQSDCMRRLSLHWYSFKGDGYCLKTFEMAIR 935
+L TK G +L E+P+ DC D +++G+ SG+Y I N + + V+CNMD V GWTVIQ R DGS+DF + W YK GFG P EYWLGN I +TS R L+I +E + Y F+I NE+ Y+L HTG + K L FST + DND + CA G+W+ +C NG +Y+ + + + W+ FKG Y L++ M IR
Sbjct: 263 NLCTKEGVLLKGGKREEEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMD-VNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITS--QRQYMLRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTG------TAGKQSSLILHGADFSTKDADND-NCMCKCALMLTGGWWFDACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIR 494
The following BLAST results are available for this feature:
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