|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062318 ID=TCONS_00062318|Name=TCONS_00062318|organism=Clytia hemisphaerica|type=transcript|length=1294bp
ATTTACGATcgtaatttttctttatatctcATCGAATAAGTAATAAGATA
TTCTCAAGTTAAAGCTCTATCTATATTTACAGGAAATGTAAAAAAGTTTT
AGATATAAAATTGACTGAAAAATTTCCACAGTAAACAGCAATTTCGCTCC
TCCAGGGGCGGGCTATGAAAtgtaatttaaaaacaaaaatctatAAAGAC
TACATAGTTACTCTAGAAGGAAATAAGACTACGAGATTCAATCTAATTAT
TTAGCCCGAATTAAATTTCGTGGAGACTTTTGggacaaaaaaaacaataa
agaaaaaGCTTTATCAAAATTGCGTCTCTAGGGACTTGGTTATGGCGAAT
GAGAGTCTTTCGTTTAAATTTCCTGGACTTGATCAAGGAATTAGattcat
aactttttattttatccaTGTTCATTCATCCGAGATCGATCGCACCAACA
TAATGTCACATAAATTAATTTTCCACACAACATCAAAtagtaaaggccgg
tctccacttgcgcgcactTCAATCGCACtctttggcttcaatcctttttg
cttggaaaaaagattacgtcatagaAATGTAGCGCGTGCTCCAAAGAAAA
GTtaaacacatttcaacttttttcaaccgttatgtcagatcgcaccaatg
gagttgcttcatttttcttttgaccaataacgtggaagctttgctcgaaa
aagtgcgatcgcagcgcgcgcaagtggagactggCCTTAATACACCGAGC
CATTCTCAGTCTTCTTCAAAACATGGCATCTTTATTTTCAGGGATATGAA
AATGGAGCGTGACCACACCCTTTTGCGTGGCCACATCTTCGAAACAGCTC
ACCAAATACACTGAAATCAAACCATACGCTAACGTCGGTACACCAAAATT
aatcaatttcaaaaaagtgaaaaatttgttttggaatTCTAAATCGATAT
ATGATGCTTTGCTGCAATGATATTTCATGTAAGGCCAACATCCTGTACGT
AGGATGTGATAATTTTCTCCATCAACTTCCCAATTAAAATGCGATGAACC
AAACTGATCGTTATGTACAGAGTGATACGGTACAAAGTACGACGTCCAGT
ACGGGAGGCCGCGTTGACGTAAATGTGACGTTAAAACTTCCGACGCTTTT
GGTTTGTCGAGACGACGTCGTAAGTATGATGCGATATTGAGtagttttag
ttttttattcatttagtttttgctgaaaCGAGAAAAGAGGATCAGTCAAA
TAGTCAGGTTATAGCAGAATGAAATTGATGTCAATAAAATTCTC Run BLAST on NCBI protein sequence of TCONS_00062318-protein >TCONS_00062318-protein ID=TCONS_00062318-protein|Name=TCONS_00062318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MNKKLKLLNIASYLRRRLDKPKASEVLTSHLRQRGLPYWTSYFVPYHSVH
NDQFGSSHFNWEVDGENYHILRTGCWPYMKYHCSKASYIDLEFQNKFFTF
LKLINFGVPTLAYGLISVYLVSCFEDVATQKGVVTLHFHIPENKDAMF Run BLAST on NCBI transcript from alignment at scaffold_362:753169..754462 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062318 ID=TCONS_00062318|Name=TCONS_00062318|organism=Clytia hemisphaerica|type=transcript|length=1294bp|location=Sequence derived from alignment at scaffold_362:753169..754462 (Clytia hemisphaerica)
GAGAATTTTATTGACATCAATTTCATTCTGCTATAACCTGACTATTTGAC
TGATCCTCTTTTCTCGtttcagcaaaaactaaatgaataaaaaactaaaa
ctaCTCAATATCGCATCATACTTACGACGTCGTCTCGACAAACCAAAAGC
GTCGGAAGTTTTAACGTCACATTTACGTCAACGCGGCCTCCCGTACTGGA
CGTCGTACTTTGTACCGTATCACTCTGTACATAACGATCAGTTTGGTTCA
TCGCATTTTAATTGGGAAGTTGATGGAGAAAATTATCACATCCTACGTAC
AGGATGTTGGCCTTACATGAAATATCATTGCAGCAAAGCATCATATATCG
ATTTAGAattccaaaacaaatttttcacttttttgaaattgattAATTTT
GGTGTACCGACGTTAGCGTATGGTTTGATTTCAGTGTATTTGGTGAGCTG
TTTCGAAGATGTGGCCACGCAAAAGGGTGTGGTCACGCTCCATTTTCATA
TCCCTGAAAATAAAGATGCCATGTTTTGAAGAAGACTGAGAATGGCTCGG
TGTATTAAGGccagtctccacttgcgcgcgctgcgatcgcactttttcga
gcaaagcttccacgttattggtcaaaagaaaaatgaagcaactccattgg
tgcgatctgacataacggttgaaaaaagttgaaatgtgtttaACTTTTCT
TTGGAGCACGCGCTACATTtctatgacgtaatcttttttccaagcaaaaa
ggattgaagccaaagaGTGCGATTGAagtgcgcgcaagtggagaccggcc
tttactaTTTGATGTTGTGTGGAAAATTAATTTATGTGACATTATGTTGG
TGCGATCGATCTCGGATGAATGAACAtggataaaataaaaagttatgaat
CTAATTCCTTGATCAAGTCCAGGAAATTTAAACGAAAGACTCTCATTCGC
CATAACCAAGTCCCTAGAGACGCAATTTTGATAAAGCtttttctttattg
ttttttttgtccCAAAAGTCTCCACGAAATTTAATTCGGGCTAAATAATT
AGATTGAATCTCGTAGTCTTATTTCCTTCTAGAGTAACTATGTAGTCTTT
atagatttttgtttttaaattacaTTTCATAGCCCGCCCCTGGAGGAGCG
AAATTGCTGTTTACTGTGGAAATTTTTCAGTCAATTTTATATCTAAAACT
TTTTTACATTTCCTGTAAATATAGATAGAGCTTTAACTTGAGAATATCTT
ATTACTTATTCGATgagatataaagaaaaattacgATCGTAAAT Coding sequence (CDS) from alignment at scaffold_362:753169..754462 >TCONS_00062318 ID=TCONS_00062318|Name=TCONS_00062318|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_362:753169..754462 (Clytia hemisphaerica)
atgaataaaaaactaaaactaCTCAATATCGCATCATACTTACGACGTCG
TCTCGACAAACCAAAAGCGTCGGAAGTTTTAACGTCACATTTACGTCAAC
GCGGCCTCCCGTACTGGACGTCGTACTTTGTACCGTATCACTCTGTACAT
AACGATCAGTTTGGTTCATCGCATTTTAATTGGGAAGTTGATGGAGAAAA
TTATCACATCCTACGTACAGGATGTTGGCCTTACATGAAATATCATTGCA
GCAAAGCATCATATATCGATTTAGAattccaaaacaaatttttcactttt
ttgaaattgattAATTTTGGTGTACCGACGTTAGCGTATGGTTTGATTTC
AGTGTATTTGGTGAGCTGTTTCGAAGATGTGGCCACGCAAAAGGGTGTGG
TCACGCTCCATTTTCATATCCCTGAAAATAAAGATGCCATGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062318-exon-scaffold_362-1491911889:753169..754462 | TCONS_00062318-exon-scaffold_362-1491911889:753169..754462 | Clytia hemisphaerica | exon |
| TCONS_00062318-exon-scaffold_362-1510915933:753169..754462 | TCONS_00062318-exon-scaffold_362-1510915933:753169..754462 | Clytia hemisphaerica | exon |
| TCONS_00062318-exon-scaffold_362-1575043694:753169..754462 | TCONS_00062318-exon-scaffold_362-1575043694:753169..754462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:753169..754462 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029245 | DUF4528 |
Blast
BLAST of TCONS_00062318 vs. Swiss-Prot (Human)
Match: CO061 (Uncharacterized protein C15orf61 OS=Homo sapiens GN=C15orf61 PE=2 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.933e-47 Identity = 76/129 (58.91%), Postives = 94/129 (72.87%), Query Frame = -2
Query: 769 KPKASEVLTSHLRQRGLPYWTSYFVPYHSVHNDQFGSSHFNWEVDGENYHILRTGCWPYMKYHCSKASYIDLEFQNKFFTFLKLINFGVPTLAYGLISVYLVSCFEDVATQKGVVTLHFHIPENKDAMF 1155
KP ASEVLT HL QR LP+WTS+ VPY +V NDQFG SHFNW V G NYH+LRTGC+P++KYHCSKA + DL QN+FFT LK++N G+PTL YGL S E V T G +T++F E++ AM+
Sbjct: 29 KPSASEVLTRHLLQRRLPHWTSFCVPYSAVRNDQFGLSHFNWPVQGANYHVLRTGCFPFIKYHCSKAPWQDLARQNRFFTALKVVNLGIPTLLYGLGSWLFARVTETVHTSYGPITVYFLNKEDEGAMY 157
The following BLAST results are available for this feature:
|
