TCONS_00062247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062247
Unique NameTCONS_00062247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062247 ID=TCONS_00062247|Name=TCONS_00062247|organism=Clytia hemisphaerica|type=transcript|length=1010bp
TTGTGATCTAAGCAGGCCTTTAGTAATCGGTTCCGTATTTTAAACggcaa
tgttttgaaaatattcgaaATGGTAGCCAGAGATCTTTCGATCCAAGACG
GACTGTGCTTGACAAaatgaAGCACAATAACGTTTTGCCAAATTCCCACT
ACCATAAACATTGGCAAAATTACGTCAGGACATGGTTCAACCAACCAGGC
CGTAAGAAGAGAAGAAGAGTTGCCCGTCAAAAGAGGGCCTTGGCCATTGC
ACCTCGACCAGTTGCTGGTGACCTCAGACCAGTTGTTAGATGCCCAACAT
TCAAATACAATACCAAAGTTAGAATGGGACGTGGATTTACTTTGGAAGAA
TTAAAAGCTGCTGGTATTGCAGCCAACAAAGCTAGAACCATTGGCATTTG
TGTCGATCATCGAAGAAAGAACAAGTGCACTGAATCCCTTCAAGCCAATG
TTCAAAGATTGAAGGAATATCAAAGCAAATTGATTGTGTTCCCACGCAAA
CAAAGTAAACCACGAAAGACTGATAGTGAGGAAGCTGAACTTGCTGTTGC
GGCCCAACTCCAAGGACCAGTTCTTCCCATCATCCAAAGCAAACCAGTCA
ACAAAGCTCGTGTTATCACCGACGAAGAGAAGAAATTATCCGTCTTCCGT
ACCATGCGTGTTGCTCGTGCTAATGCTCGTCTTATCGGTATCCGTGCTAA
ACGTGCACGTGAAGCTGAAGCCGAGGCTGCAATGAAAgctaagaaataaa
taaattctcttctcttcaaaaaattacatttttgtcagtttttgtcTCTT
CCTTTGTTTTATCCATAAACTTTCGATAAAATGACTCACCTTATAGTGTG
GTTGTAGGGGATTCTTTCCTGAGATGTAAGCATCCTATAGAAaagtctgg
agaaagtttcaggtagatcttatttttggacctaccgggaggtcctttaa
tttgaccgttgtccgttcgtctgttacaagcttttctcgggattggctca
ttagtttttt
Run BLAST on NCBI

protein sequence of TCONS_00062247-protein

>TCONS_00062247-protein ID=TCONS_00062247-protein|Name=TCONS_00062247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MKHNNVLPNSHYHKHWQNYVRTWFNQPGRKKRRRVARQKRALAIAPRPVA
GDLRPVVRCPTFKYNTKVRMGRGFTLEELKAAGIAANKARTIGICVDHRR
KNKCTESLQANVQRLKEYQSKLIVFPRKQSKPRKTDSEEAELAVAAQLQG
PVLPIIQSKPVNKARVITDEEKKLSVFRTMRVARANARLIGIRAKRAREA
EAEAAMKAKK
Run BLAST on NCBI

transcript from alignment at scaffold_362:359661..367924-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062247 ID=TCONS_00062247|Name=TCONS_00062247|organism=Clytia hemisphaerica|type=transcript|length=8264bp|location=Sequence derived from alignment at scaffold_362:359661..367924- (Clytia hemisphaerica)
TTGTGATCTAAGCAGGCCTTTAGTAATCGGTTCCGTATTTTAAACGGCAA
TGTTTTGAAAATATTCGAAATGGTAGCCAGAGATCTTTCGATCCAAGACG
GACTGTGCTTGACAAGTAAGAATTTTATGCTGTTATCCTGAATCCTTATG
TATCAGTCGGATGAACAGATCTTAAGTCTGAGATTTATGTTATTGCAGAG
TATTGATATTTATTATATGATTTCCTAACCCTATTTTTGTTTAATNGAAC
AGATCTTAAGTCTGAGATTTATATTATTGCAGAGTATTGATATTTATTAT
ATGATTTCCTAACCCCATTTTTGTTTGAAATTTTCAGAATGAAGCACAAT
AACGTTTTGCCAAATTCCCACTACCATAAACATTGGCAAAATTACGTCAG
GACATGGTTCAACCAACCAGGCCGTAAGAAGAGAAGAAGAGTTGCCCGTC
AAAAGAGGGCCTTGGCCATTGCACCTCGACCAGTTGCTGGTGACCTCAGA
CCAGTTGTTAGATGCCCAACATTCAAATACAATACCAAAGTTAGAATGGG
ACGTGGATTTACTTTGGAAGAATTAAAAGCTGCTGGTATTGCAGCCAACA
AAGCTAGAACCATTGGCATTTGTGTCGATCATCGAAGAAAGAACAAGTGC
ACTGAATCCCTTCAAGCCAATGTTCAAAGATTGAAGGAATATCAAAGCAA
ATTGATTGTGTTCCCACGCAAACAAAGTAAACCACGAAAGACTGATAGTG
AGGTAAGAAATTACTTTGATGGCTTCATTGATTAAGTTTGTTTTACTTGG
TTATGGATTTGGTTGGTTTACATGTGTGGAGTGCTTGTTAATTTGGGTGC
ATGTCGCTAGTCCGACACTTTCTAGTCCGACAGTAAAATAGTCCGAATCT
ATAAAATAAATTTACAATTTGGAAGTCTTTTTATCCGACGTCACTTTTGT
TCGAAAAAACGAAAGATTTTAGAGTGCCGAATGTTGAATAAGGGTTTTTC
ACTGAGATAATAATAATATAATAAAAGTTCATTTTGGCGGCATTTTGACA
TAATGAGAAATAAAGGACCAACCAAGTTTGCGTAAAGATAATTTATAGCA
AAAAGAATGCACCGCCTTTAAGGGTCCCTTTTTGCATGTTCAGAATTATG
CTATTATATAGGTTGTAAATCACAAAAGAAGGGTCGTAAAAACAGCTAAA
TCCAATTTCTTGACTCTTGAAAGCCTAATACTAATAAGCTTCCCGAAACT
TAAGAAAAGTCGGGTTTAAGGGCCTAACCTCAAAGTCGGAACTTTGAATT
TTTATAAAAGATGTGCCTCCTCTTCCGCGATTCATATTTCGTTTTTTATA
TGTTCTTTTTTTACTCGTTGTAGGACAAAATTTTTGTCGAAATACTGACG
CATTCGTCAAATCCAACGTCGGACATTTTTACTGTCGGACTAGAAAATGT
CGGACTACTGACGACCTCCCGTTAATTTTGTTGGTTGTTGGATTTTATAA
AGAGTTTCCGATAGATTAAGGCCATAATAACAATATAGCTTGTGATTGAG
CAGTTCTTAGGTGAGTTGGTTAACGAAAAATCGTCAGAAAAATGAATACA
CCTTTCCCTTAATTCGTAAAACTAATGCACCCGCATTATTTTGATGCTCT
CCATCATTTAGACTCTGGAGGTAAACAAACCTGTTTAAATTTCTGTTGAA
CAAAATCCCTGCAAATTTTAGTATGTTCAATCTATTCATACAGTAAATCC
TCAGGCGCTTATTTAATTTTTCAGGCTCTAAGGGGGCGCTTATTTTTTTA
TTTTAGAAATTCGCATATAAACAAATTCGGAAGCTATTTAAACTCAACTG
TTTCAAAGAGTTGGATTTTCAAAAAAGGATGAATAAAAGAAAAATTGGAA
AAATCCAATTGACAATTTCTATCATTTTATTCTTAATTGCTTTCTTTCTT
TTGAAGACATAAGTATCTGCTTAATATCTTATTCAATCAATAACAATATT
CGAATAAGTTTGAGCGGGGCGCTTATTCAAGGATTTATGGTAATATTATA
CCACCCTGAAAATATTTTGCCAAAAGAAGATCGCTATCAAAAGTATAAAG
CTGAAAACCCACTTTCCCTAACACCTTGCAGGCCAAAACGCATTCATTTA
CCTCCCAAACAGTTTTATACACACAGTGGAGCGCACATTTTCCCAGGCCA
CTTCTGCAAAGTTTACGGGAAAGGTGTATTTAAGTCGGTGCCGTGGTATA
GTGGTAGTCGACCTTGGCTTCTGTGCTGGAGGCCAGGGTTCGATTCCCAC
TCACGACAGTTCACTTGGCAAGTGAACATTCCTTCGCCCGGGTCAACCCA
TGCCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTCCTGACGGGACGCT
CATTAGTAAGCGTCTATAGTTGCGAGAATAGGCCTCTAAAGCCTCCTGCA
ACTCAACCAAATAGAAATAGAAAAATAGAAGTATGAGTCTGGGTGAAATC
TCAAAATTGTTAGGTTTTTATCCAAATACTTCCTATGCTTCACCACCATC
TTTTGCTTAAATTATTGATCGCACTGGATTTAAATTTCAAAATATAATGG
AGGTATATCCAACCCTTTCCTTTGAGTTCCGGGAGTGTATTATTATCTCC
CTAGTCTTAAAAGCAGATTTCGCATTTGAAAAGATGGGTCCTATCATAAA
ATCATAGAGGGCACCCCCCCCTGGATTATGGGGGGTTGAAGATTTTCAGA
TTTTTAAAAATAGGTGTGTGTTGGGTTGATGAGAAATTTCAGGTGGGGGT
AACCCTATGTAGGTGGGGGTAACATTTTTCAGGTGGGGGTTGTCAAGTTT
TCTGTATTTAACTTCATTTGATTTTGTACTTGTTTGTCTTTTTCAACTTT
CAACATACTATACTAGATAAAAATATAAACAAATGACTGTCATAAGTTCT
GAAGGTTAAAAAGAGTTCATTTTTTCTCCATTCTTTTCCTTTCCAGTTTG
TAGTCCTCAGGACTTTTAACTGGGATCTTTAGTGTTCCTAAAAGGAACAA
GACCTCCAAATTCGAAGGTGTGATTCGATTGCGCCATTTTGCGCATATGA
GTTGGAGTATGGTGTAGCCCCTTTCTACCAGCGAGGTGTTGCTGAAAAAG
GTGGGGGTTGGGCTGATATGAGATTTCAGGTGGGGGTAACCCTACGTAGG
TGGGGGTTGGAGGGGTGTTGCCCACTATGAAAATCCAAAAGTGAAGATAA
ACAGCTGACTGATTTGCTGTGTCTGGATTTCAATGATAAGGGCCCTCTAT
TTTCTTTTTCTAATGCGGTATCTTATCTATACCTATCTAATAGCTTTTAT
GGCTAGGGAGATAATAATACATTCCCGCAACCTATAGGAAAGGGTTCGAT
ATCATCTTCGTTATATTTTGAAAATCAATTCTTGTGCGATCAATAATTAA
GCAAAAGATGTGGGGTGAAGCAACAGAAATAATTGGATATAAATCTAAAA
ATTTAGTGACCTGTCTCAAAAGATTCATCAAAGTAAGAGATTATCAGTTT
GCAGGAAGACAAGAACATTGATTGATACATACCACTTGATACCTTTTTTG
TTTGTTAAATAAAATTCAGCAAATTGAGTTGGCTGGCTTTGGTTTTTGAT
TTTGTCTAATTAAAAAATCATAATTTTTTAGCGATAGCAACTCTGATTGG
ACTCGAGTACAACCCACTTGTTATTGTTAGTGGATTATTTTTGTCCATTT
TCCATAAAATTAGTCCTCACAAAAAATTGTAATATTTTGGCTAAAAACCC
TAGGGAAGTAATAGTACGGTCTAGTTGTGCAAATATTGTGCACAAAGGCG
TAAAAGCATGAAACTTTGCACAATGGTAGTTTAGGGGTCAAAAATGGATT
TAAATCTCAGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATTTAAATCCATTTTTGACCCCTAAACTACCA
TTGTGCAAAGTTTCATGCTTTTACGCCCTTGTGCACAATGTTTATGACTT
TTGGCACATTTAGACTGCACTATAAAAGTAATTGGGTGAAAAAGAGACAA
ATTTGAAAATTAGTCTTGATTTACAATAAAAATCGTCCACTCGAAAATGA
ATTCACTTAATGTAATAGGATTGTCAGCCTTGATAACACAGTATCCTAGA
TTGATCTCTTATATCAATCACATCTGATTGAGTGCCTGGTCAATTTGATG
GATTTGTGGCTGAATTCAAATTTATTGTTGCCAAGCTATAAATACCCTCC
AGTCTTCAGTTCTTTGCAGCATTTTTTGTTTTGTATAATGAAGAAATCGT
TTTTCTCTCACCCTGACTTTTAAATAGTAGGTTGTTTCAGATTTATTCTG
CGCACATCCCCAGAATTGATTTTGGTATAGAGCTGTATTTTGTGTATGAA
ATTCCTGTCTGAGAGTTTTGGTTTGGTAAAAGAAGGTGATAAGCCTGGAT
TTTAGAAGGAAATTGGATCTTGAATTGAAAGGTACAGCACTGTTTGGTCT
GAAAAATTTAATGTATTTATAATGCAGAAAATGTCTTCCTTTGTTGTTTA
ATTGTTGTAGCCATATGCTTTGCTCGAAACATAAATCAGAACAAAAGTCT
ATTGGGAAAAGTACACATTTTGATGCCTCGGTAATAATACTGTTGTGTTG
TTCTTTGATTCAGTGTCTTACTGAAACATAGAATATTCACCAGTGTACTA
TTCCCTAAATATAACTGGAGTATCATAGTGCGGTTAGCTGATCCAAGCCA
GCTCTCAGTCTCCATAAGCTCCAACAGACATCACAATTGTTTAATATTGT
TAAAAAATATTTTCACATGTTTTTTGAATCATGATTTCAATATGATCAGT
CTTGAACATCTTGAGGAAGATAAACTTCATGTTGGGGTAGGATGGTTCAC
TCAATGATTCATTCTTCATTGATAACATGAAGATAATGCTTATCTTTCAG
TACAGTATATGGCCCCCAAAACGGAGACTGACCCGAAACGAAATAAAGAA
AGATGTTGAAGTTTAGCGTGCAGCAAAAATTTTTATAAAACCTCTTCCTC
TAGATTTGAGAGAAATTTTAAATTTGATCAACGTTTTCGGGGCCACATAC
TGTAGATACTTTAAGAATTTCTGTCTGAAATGGAATATCTTGACTTTAAA
GTTTGGGTTCGATACTTGTTTTAATTCCTTGGTCCACTCTCGGTATTGAT
ACAATGATGATAGCATGTCTCGTTCGTATGATATATTTGATTATAAAACA
AACGGAACACTGAGTATCAATGTTAATTCGTATCATTGCTTGATTATTTG
TAAAGTTGTTAAGATGTGAGCATGCTGAAGATTCATTGAGTTTACTTAGA
ATCATTTACAAGTGACGTCTGTTTGTTTAGAAATAGGTTGGTTTGAATAA
ACTCGATGCAAAGATGACAACATGTCTCGTTCGTATGATCAACTTGATTA
TAAACCAAACGGAACACTGAGTATCAAAAACTCTCTTAACTGCATTCAGA
ATAAAGCCTAACCCTAAGTTGATTTTGACTCCTTTGTAGGCTTTATGTAA
AAGTTGTCCCGGTCAGAGTCATTGCTTTGGAGTTTTCTGTCCAGATTTTC
TATGAATATTAGGAACAAATCTCCTGTCAGAACTTACAGTTCAAATAAAC
TTGATGCAAGGATGACAACATGTCTCGTTCGTATGATCTACTTGATTATA
AACCAAACGGAACACTGAGTATCAAAAACTGTCTTAACTGCATTCAGAAT
AAAGCCTAACCCTAAGTTGATTTTGACTCCTTTGTAGGCTTTATGTAAAA
GTTGTCCCGGTCAGAGTCATTGCTTTGGAGTTTTCTGTCCAGATTTTCTA
TGAATATTAGGAACAAATCTCCTGTCAGAACTTACAGTTCAAATAAACTT
GATGCAAAGATGACAACATGTCTCGTTCGTATGATTTAATTGATTATAAA
CCAAACGGAACACTGAGCATCATAAAACGTCTTAACTACATTCAGAATAA
AGGCTGAGTAGATTCTTATTCCTAGATAGGCTTTGTAACGGTCTGTCCTG
GTTAAGAGCTATTTCTTTGAAGTATTCAGACCAGTTTTTCAACGAATATT
AGGAACAAATCTCCTGTCAGAACTTACAGTTCAAATAAACTTGATGCAAA
GATGACAACATGTCTCGTTCGTATGATTTAATTGATTATAAAACTAACGG
AACACTGAGCATCATCGGTTGGTGAATCGTCATTGTAAATAGTACGAGTT
AAGATTTTAAACATTGGTATTTAATTTAAAAAGGGGGTTTGAGACCCCTT
CGCACGGTATGCGTCCATCTCTTTTTTTGTGTTGTACCTAAAGGGAACTT
TTTTTGGCGGGCAGCAAATATCCATTAAAAAAAATTATTTTGGCAAATAG
TGAATTTTTTTAATTTTGGCGGGAACTAATTTTGGCGAATGACAGCGTAA
ATTTGTTCAATTTTGCCTTATTTTGAGATATTTTGAATTTCAGGGGTAAT
TTAGGTAAGGAAAAAAAATTACCTAAATTCGCCAAATCCGCCAAAATTAG
TTCCCTTAAGGTAGTCAGTCACAAGTGTAGAGCTTGAATATTTGATTGTA
TGTAAAGCAGAATCTAGGATAGTTTTGAAGTTTTCTACATTTTCTGTAGT
GCTTTATTTGAGTTTGACTTGAACATTTATGAAACGTTTTATTTTCTCCA
TGCAATGATGATCATCCCCGTCACATGAAACTCTGTTCTGTGTTGCAATA
TTTTCAAAAATTTGCGACTGAACAAGGATAGTTTGTGATTTAGAAAGAGC
GTGATCTGAGCTTAAATGAATATGCTTCTTACATGTTGAGCAAATTTACG
ATTGCTATTGAAAATTTTATCATTTACTTTACAGGAAGCTGAACTTGCTG
TTGCGGCCCAACTCCAAGGACCAGTTCTTCCCATCATCCAAAGCAAACCA
GTCAACAAAGCTCGTGTTATCACCGACGAAGAGAAGAAATTATCCGTCTT
CCGTACCATGCGTGTTGCTCGTGCTAATGCTCGTCTTATCGGTATCCGTG
CTAAACGTGCACGTGAAGCTGAAGCCGAGGCTGCAATGAAAGCTAAGAAA
TAAATAAATTCTCTTCTCTTCAAAAAATTACATTTTTGTCAGTTTTTGTC
TCTTCCTTTGTTTTATCCATAAACTTTCGATAAAATGACTCACCTTATAG
TGTGGTTGTAGGGGATTCTTTCCTGAGATGTAAGCATCCTATAGAAAAGT
CTGGAGAAAGTTTCAGGTAGATCTTATTTTTGGACCTACCGGGAGGTCCT
TTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGCTTTTCTCGGGATTGG
CTCATTAGTTTTTT

Coding sequence (CDS) from alignment at scaffold_362:359661..367924-

>TCONS_00062247 ID=TCONS_00062247|Name=TCONS_00062247|organism=Clytia hemisphaerica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_362:359661..367924- (Clytia hemisphaerica)
GAAGCTGAACTTGCTGTTGCGGCCCAACTCCAAGGACCAGTTCTTCCCAT
CATCCAAAGCAAACCAGTCAACAAAGCTCGTGTTATCACCGACGAAGAGA
AGAAATTATCCGTCTTCCGTACCATGCGTGTTGCTCGTGCTAATGCTCGT
CTTATCGGTATCCGTGCTAAACGTGCACGTGAAGCTGAAGCCGAGGCTGC
AATGAAAGCTAAGAAATAAATGAAGCACAATAACGTTTTGCCAAATTCCC
ACTACCATAAACATTGGCAAAATTACGTCAGGACATGGTTCAACCAACCA
GGCCGTAAGAAGAGAAGAAGAGTTGCCCGTCAAAAGAGGGCCTTGGCCAT
TGCACCTCGACCAGTTGCTGGTGACCTCAGACCAGTTGTTAGATGCCCAA
CATTCAAATACAATACCAAAGTTAGAATGGGACGTGGATTTACTTTGGAA
GAATTAAAAGCTGCTGGTATTGCAGCCAACAAAGCTAGAACCATTGGCAT
TTGTGTCGATCATCGAAGAAAGAACAAGTGCACTGAATCCCTTCAAGCCA
ATGTTCAAAGATTGAAGGAATATCAAAGCAAATTGATTGTGTTCCCACGC
AAACAAAGTAAACCACGAAAGACTGATAGTGAGGAAGCTGAACTTGCTGT
TGCGGCCCAACTCCAAGGACCAGTTCTTCCCATCATCCAAAGCAAACCAG
TCAACAAAGCTCGTGTTATCACCGACGAAGAGAAGAAATTATCCGTCTTC
CGTACCATGCGTGTTGCTCGTGCTAATGCTCGTCTTATCGGTATCCGTGC
TAAACGTGCACGTGAAGCTGAAGCCGAGGCTGCAATGAAAGCTAAGAAAT
AAATGAAGCACAATAACGTTTTGCCAAATTCCCACTACCATAAACATTGG
CAAAATTACGTCAGGACATGGTTCAACCAACCAGGCCGTAAGAAGAGAAG
AAGAGTTGCCCGTCAAAAGAGGGCCTTGGCCATTGCACCTCGACCAGTTG
CTGGTGACCTCAGACCAGTTGTTAGATGCCCAACATTCAAATACAATACC
AAAGTTAGAATGGGACGTGGATTTACTTTGGAAGAATTAAAAGCTGCTGG
TATTGCAGCCAACAAAGCTAGAACCATTGGCATTTGTGTCGATCATCGAA
GAAAGAACAAGTGCACTGAATCCCTTCAAGCCAATGTTCAAAGATTGAAG
GAATATCAAAGCAAATTGATTGTGTTCCCACGCAAACAAAGTAAACCACG
AAAGACTGATAGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039014XLOC_039014Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062247-proteinTCONS_00062247-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062247-exon-scaffold_362-1575043694:367810..367924TCONS_00062247-exon-scaffold_362-1575043694:367810..367924Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1575043694:367173..367587TCONS_00062247-exon-scaffold_362-1575043694:367173..367587Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1575043694:359661..360140TCONS_00062247-exon-scaffold_362-1575043694:359661..360140Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1510915933:367810..367924TCONS_00062247-exon-scaffold_362-1510915933:367810..367924Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1510915933:367173..367587TCONS_00062247-exon-scaffold_362-1510915933:367173..367587Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1510915933:359661..360140TCONS_00062247-exon-scaffold_362-1510915933:359661..360140Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1491911889:367810..367924TCONS_00062247-exon-scaffold_362-1491911889:367810..367924Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1491911889:367173..367587TCONS_00062247-exon-scaffold_362-1491911889:367173..367587Clytia hemisphaericaexon
TCONS_00062247-exon-scaffold_362-1491911889:359661..360140TCONS_00062247-exon-scaffold_362-1491911889:359661..360140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:359661..367924 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2430.41	2533.81	2653.49	2748.28	1624.37	1301.42	1739.89	1837.88	2843.61	2576.24	2914.74	3512.82	4060.85	4163.67	3829.76	3619.98	4187.54	4052.06	2067.85	2157.96	3953.08	3848.79	3394.89	3147.94	2123.55	2337.16	3777.96	3724.28	2589.52	2748.29
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001380Ribosomal_L13e
IPR018256Ribosomal_L13e_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00062247 vs. Swiss-Prot (Human)
Match: RL13 (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 212.231 bits (539), Expect = 9.781e-67
Identity = 119/189 (62.96%), Postives = 141/189 (74.60%), Query Frame = 3 
Query:  126 NNVLPNSHYHKHWQNYVRTWFNQPGXXXXXXXXXXXXXXXIAPRPVAGDLRPVVRCPTFKYNTKVRMGRGFTLEELKAAGIAANKARTIGICVDHRRKNKCTESLQANVQRLKEYQSKLIVFPRKQSKPRKTDSXXXXXXXXXXXXGPVLPIIQSKPVNKARVITDEEKKLSVFRTMRVARANARLIGI 692
            N ++   H+HK WQ  V TWFNQP RK RRR ARQ +A  IAPRP +G +RP+VRCPT +Y+TKVR GRGF+LEEL+ AGI    ARTIGI VD RR+NK TESLQANVQRLKEY+SKLI+FPRK S P+K DS   EL +A QL GPV+P+       KARVIT+EEK    F ++R+ARANARL GI
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGI 194
The following BLAST results are available for this feature:
BLAST of TCONS_00062247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL139.781e-6762.9660S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
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