TCONS_00062247-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062247-protein
Unique NameTCONS_00062247-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062247-protein ID=TCONS_00062247-protein|Name=TCONS_00062247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MKHNNVLPNSHYHKHWQNYVRTWFNQPGRKKRRRVARQKRALAIAPRPVA
GDLRPVVRCPTFKYNTKVRMGRGFTLEELKAAGIAANKARTIGICVDHRR
KNKCTESLQANVQRLKEYQSKLIVFPRKQSKPRKTDSEEAELAVAAQLQG
PVLPIIQSKPVNKARVITDEEKKLSVFRTMRVARANARLIGIRAKRAREA
EAEAAMKAKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039014XLOC_039014Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062247TCONS_00062247Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001380Ribosomal_L13e
IPR018256Ribosomal_L13e_CS
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001380Ribosomal protein L13ePFAMPF01294Ribosomal_L13ecoord: 6..185
e-value: 5.5E-81
score: 270.6
IPR018256Ribosomal protein L13e, conserved sitePROSITEPS01104RIBOSOMAL_L13Ecoord: 69..83

Blast
[Close]
BLAST of TCONS_00062247-protein vs. Swiss-Prot (Human)
Match: RL13 (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 240.736 bits (613), Expect = 2.733e-81
Identity = 130/207 (62.80%), Postives = 155/207 (74.88%), Query Frame = 0 
Query:    4 NNVLPNSHYHKHWQNYVRTWFNQPGRKKRRRVARQKRALAIAPRPVAGDLRPVVRCPTFKYNTKVRMGRGFTLEELKAAGIAANKARTIGICVDHRRKNKCTESLQANVQRLKEYQSKLIVFPRKQSKPRKTDSEEAELAVAAQLQGPVLPIIQSKPVNKARVITDEEKKLSVFRTMRVARANARLIGIRAKRAREAEAEAAMKAKK 210
            N ++   H+HK WQ  V TWFNQP RK RRR ARQ +A  IAPRP +G +RP+VRCPT +Y+TKVR GRGF+LEEL+ AGI    ARTIGI VD RR+NK TESLQANVQRLKEY+SKLI+FPRK S P+K DS   EL +A QL GPV+P+       KARVIT+EEK    F ++R+ARANARL GIRAKRA+EA AE  ++ KK
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEA-AEQDVEKKK 211
The following BLAST results are available for this feature:
BLAST of TCONS_00062247-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL132.733e-8162.8060S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
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