TCONS_00062206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062206
Unique NameTCONS_00062206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062206 ID=TCONS_00062206|Name=TCONS_00062206|organism=Clytia hemisphaerica|type=transcript|length=701bp
TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag
tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT
TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA
GAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGCTTACGACCC
CATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATTTATTCATCG
ATATGCTAtctgaaaacaatgaaaaattcgTAGAATTTGGAATGGCTGGT
TTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGACCATATCATTAAGAA
TGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGCACTAATGAAGAAA
TAGTGTTGAATGCCATGACAACACTCATATATTTAGTCACACCAGCCACC
AGGAAAGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAA
GACCTCAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGG
ATAATTGCCATGGTTGATGAAGATAACTCAGGAGGTTTAATTTTTCAGCT
GATACCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTATA
AAGTTTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAGA
N
Run BLAST on NCBI

transcript from alignment at scaffold_362:729376..732322+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062206 ID=TCONS_00062206|Name=TCONS_00062206|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at scaffold_362:729376..732322+ (Clytia hemisphaerica)
TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag
tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT
TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA
GGTGAGAGTTGGATACAGGGGGATTTGTCTGCCTGATTTCTAATAGTTGA
ATGtaacaatgaaaatattataaagGTCTGGACGAGGTGTTAAATGTGCC
TGTTTTGTACTCGGAGATaacaacaaaaaaacgtaaattttatgtTTCTA
TATTAGTTTACGTAACCTTTTGGATACACTGAAATTAGAACTTGTGATTT
GACGAATCTTACAGCAGTTATTCGTATCATTCATGATTAGGAAACCTTTG
GCATTCATGATTAGGAAACCTTTGGCATTCAACTGTTTATTTGCAATATC
GCTTTTAACGGAGTAACTTAATTTCGAAATTTCTGTGGctgttatttttt
cttttggatGATAACCTTTAAGCTTTATGTAATGTTTGATGAAAAGTTGG
TGAtggaaaaaacaatttgaaaatttaagacACAAGGAGTTATGATTGTC
ATGTATAATCTCCTGAATTATCATAAACTTGACTCATCAAATGAAATTTT
GTTCTTTTAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGC
TTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATT
TATTCATCGGTAAATTCTAAATTGTGTGATTTATttagtttaaaaaataa
tagaaCATAATGCTGTGAAATATATTTTAGATAGAGTTTCCATCTTTTCA
TTCTGAAGTGAAAGAATTCCAGATTTCATTTTGGAACAAATTTACTATAT
ACTGTATTATACACTGTAACACAGGATTGTTTCTGCCCTCACATTtcatt
ttaacttattttaacTCAGATTTTTTCTTACAGATATGCTAtctgaaaac
aatgaaaaattcgTAGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGT
TGGTTGGTAACTTATCTTGTATTCAATCATATTTGATTTATCTTATAATT
TAGTTTATCTTATAAACTGGATTCTATCCACCTACAATTGGGTGTGTTAT
ATCTCCCTAAGCTTGCCAAAAATGTGTCTGACATGCACTTTCAGATTTAA
TAAGATGTCACGGAACTCCAGGCTCGGCCCCCTACTGTGCTATACATTTT
AACTTCGTTTTCATTCTTTGTTTCAGAGTCAACAAATAGAGACCATATCA
TTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGGTTAGCC
GTAATGTTTTTTgaattgttaatttttttaccaaagatTACTTTAATCAT
TTCAAAATGTCCGTAtgtaataagaatttttttttctccaaaaactCTCC
AATCTAGAATTATTGTAATCATTCAAATCTTCACTCTTTCTTATAGCACT
AATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTAGTCAC
ACCAGCCACCAGGAAAGGTAAAATAGCCATCACCTCCTCTACTAAATCTC
AGATGAGATGATAAGACGTGTAACTTCAGTCCAAGGTTATtcaaaggctc
ctctttcaatTGTTGTCCACCAGAAGAGAGGGGATGATCTCACTCTTTCT
CCTACAGTGTCTATTGTTGACCTTTCTCTGTAGTTTCCAAGCACAAAACT
ATTAAGTCATTAGTAAGGTCTTACTGACCCTTATAACCCCTGAACTCAAC
TAATTATATCCGCAATCCTTGTTTAGAGTTGTATTAAagttgtattcatg
atatgcaccgctgcaatgtcttctgacatcacggaaccaattcatgatat
gcaccactgcaatgacttcacgaaattatgcaatttttctgtatttgttc
cacccaatacgtctttttttctattgtttaagtgacgtatcgggttgaac
tttttgaaaattctcagaagactctccagtggtgcatatcatgaatagct
cattggttgtaagtgacgtaaaatcagtcaatacgtcacactatcaacca
atcagctattgggtggaatggaagacattgcaatggtgcatatcatgaat
actctAATGGTAGTACTTCGCAATGTACAATTAGGGTAACTCAGATCATA
GATTTTGTTTTGCTgcatattatattattttgaacCCTTAATTTGACTCA
TTGTCAccattgaaatttgatttttaatcaaatttacTTCATCTGTTTTA
AGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAAGACCT
CAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGGTATAG
CCTTTTTACCAAACCATTTATTATACAATTTGAAAGTGCCAAACCACTAA
AACGGCCTAGAGATGACTAAAAGAGCTACTTCACAGAGCTATGATTTTTT
ATGTAAGAAAATTATGGAGAATCTGAACACAGATTTGAAATCATTAAGtt
ttaaatattctaaaaaGTATGATGTCATTATTTTTGAACCAGTAGGTTCA
ATCATCTTCAATTTAGACTTTATAATGATCTTAAATCTATTAGATAATTC
TCCTCgagaatatctttttaacggtACATAACTTTCTAACATGGCGTAGA
GGAGTGCTGAGGTATTGTTAAAATTAAAGTGTCAACATATTTCAgacttt
atttttgaattcactttattttatcaaaattcctTCTGACTTCAGGATAA
TTGCCATGGTTGATGAAGATAACTCAGGAGGTTTAATTTTTCAGCTGATA
CCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTATAAAGT
TTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038999XLOC_038999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062206-exon-scaffold_362-1491911889:729376..729526TCONS_00062206-exon-scaffold_362-1491911889:729376..729526Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:729376..729526TCONS_00062206-exon-scaffold_362-1510915933:729376..729526Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:729376..729526TCONS_00062206-exon-scaffold_362-1575043694:729376..729526Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:730036..730134TCONS_00062206-exon-scaffold_362-1491911889:730036..730134Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:730036..730134TCONS_00062206-exon-scaffold_362-1510915933:730036..730134Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:730036..730134TCONS_00062206-exon-scaffold_362-1575043694:730036..730134Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:730359..730427TCONS_00062206-exon-scaffold_362-1491911889:730359..730427Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:730359..730427TCONS_00062206-exon-scaffold_362-1510915933:730359..730427Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:730359..730427TCONS_00062206-exon-scaffold_362-1575043694:730359..730427Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:730652..730718TCONS_00062206-exon-scaffold_362-1491911889:730652..730718Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:730652..730718TCONS_00062206-exon-scaffold_362-1510915933:730652..730718Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:730652..730718TCONS_00062206-exon-scaffold_362-1575043694:730652..730718Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:730872..730942TCONS_00062206-exon-scaffold_362-1491911889:730872..730942Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:730872..730942TCONS_00062206-exon-scaffold_362-1510915933:730872..730942Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:730872..730942TCONS_00062206-exon-scaffold_362-1575043694:730872..730942Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:731678..731769TCONS_00062206-exon-scaffold_362-1491911889:731678..731769Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:731678..731769TCONS_00062206-exon-scaffold_362-1510915933:731678..731769Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:731678..731769TCONS_00062206-exon-scaffold_362-1575043694:731678..731769Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1491911889:732171..732322TCONS_00062206-exon-scaffold_362-1491911889:732171..732322Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1510915933:732171..732322TCONS_00062206-exon-scaffold_362-1510915933:732171..732322Clytia hemisphaericaexon
TCONS_00062206-exon-scaffold_362-1575043694:732171..732322TCONS_00062206-exon-scaffold_362-1575043694:732171..732322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:729376..732322 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.6508	16.8538	4.9053	7.35252	12.1436	8.70801	6.95286	9.43038	10.3422	9.65031	8.89948	7.91484	5.09137	4.35307	5.12475	4.26232	10.0095	7.60014	2.14751	4.31651	7.73131	8.11547	18.4986	11.8271	7.10994	8.3385	7.10015	6.77675	10.9448	10.429
Blast
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BLAST of TCONS_00062206 vs. Swiss-Prot (Human)
Match: ARMC7 (Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.701e-53
Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 1 
Query:   94 NRFDYLQSLVTEFQDTDNEESKLQILANLGNFAYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDHIIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATR--KDIITEEIVDCMKQLKTSTNPRLKNLATIFLQDNC 558
             R  YLQ+LVTEFQ+T ++++K Q+LANL NFAYDP N+ +LR+L V+DLF+D LSE NE  VEF + GLCNLC +  N++HI+   GV  I+ C SS NEE VL+A+TTL++L  P      ++    +V CM +   S + RL+NLA IFL+D C
Sbjct:   12 GRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENETLVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGRSFLPELTATPVVQCMLRFSLSASARLRNLAQIFLEDFC 168
The following BLAST results are available for this feature:
BLAST of TCONS_00062206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARMC73.701e-5350.96Armadillo repeat-containing protein 7 OS=Homo sapi... [more]
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