TCONS_00062204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062204
Unique NameTCONS_00062204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062204 ID=TCONS_00062204|Name=TCONS_00062204|organism=Clytia hemisphaerica|type=transcript|length=2708bp
aggcttttaaatcgaaatatgaaaacaaATCCGTAGTGTGACACGCAAGT
GTCTGGAtagaagaagaacaaattagtggcaaaatgatggagcatttgac
gtcacttgcgcGGCTAGTTACACACTCGCtttttgttaatcccatcgaac
gataggcggttaggcagcgggtgttctctaattctccaattggCGTCCgg
taatgaaaacaaaaaaattaaaaaaggcacgctatcgtgacatgttatga
cagaaagtataactgataaacttggtggagttatcaaaacaaatttgttg
tcaaagagatttaacagtatgTGAAAATACaagccagatatcaacagtct
cATGTTTCgaccaaaaaacatttttcattaaaaacactacatcttgaatt
ttctgactttgacatttgacatCCTAACTGCTTTTTACATTAAGTATGTA
TATATAATCACACTTAATCACAAACTCCATAAAAAAAACTTGGGAAAAtt
cttgaatgaaaaaaaacgcgaaaattaaaacccacgAAATGctatttttc
ggatattttttttcgaccgcaaaaattagttcccacggAAAtgagttcca
ataaggtatacaTTTTTGTAGCCtgtgtatccagactcaaaattttagaa
aaaaactcttacctcatCATACAAAGTTTTAAACTTTTAGAGTCTgatgc
aactaaaaaagtctggtacaatttgaatgacacagtctgtgagtgaaccc
ttgttgacagaatctcaaaactttggaaacccaggcagacacacataatg
acttaccataaaacctcttttacaagcTCAAAAGCCTTTAAACTACATCT
AAAcgtcagccacattcataaaggatcctttccatcagccattttgtttg
gagatgaacctgtgttttcattttcatttgttcatctttttttgcaatgt
cagctttttcTATAAATTATAAGCGCGcatagaaaaatattgaaaacccC
GCGAatattctgctcagtgactgggcgcgtattGGCCAATTAGAtgcact
cgcatatgcagggacaaatATTCCTGCAGAAGAGTTAGTTGGACCAGacc
gtaaaccagagacaaaattataaaaaactagacggtgaaatagtttacgg
tctggatatccaggctaacttTTTTGTTACTCACTTATTCCTGCATTTGc
taaaaatggacaaaaataacgACAAATGACgtataaaaaacgacaaattt
tgcTCTCCATTCAACTCTGACTGACGGTTAGTTTGTCCACCTCTAAAATt
ccattcctctttgtttattgCGAAATTGACAACTTATGGTTTTAAAGAAC
AATAAATTATGCATGCGTGTTATTAATGCAGGACATGTTAGTCCCACTGt
tattatatttcaattttgttttgatgataaaGCTAGTATAGAAGAAAAAT
AATGTCAGCCAATTATGATAGAGCAATTACCATCTTTTCTCCTGATGGTC
ATTTGTTTCAAGTTGAATATGCACAAGAGGCTGTCAAAAAAGGATCAACT
GCTGTTGGTGTAAGagggaaaaatattgttgcacTTGGTGTTGAACGCAA
GTCAGTTGCCAAATTGCAAGAACCTCGTACAGTTAGAAAAATCTGTGCTG
TTGATGATCATGTATTCCTTGCATTTGCAGgaTTGACTGCTGATGCAAGA
ATTTTGATAAACGCTGCACGAGTAGAATGTCAAAGTCACAAACTCAATGT
TGAAGATTCTGTTACACTTGAATANGCTGATGCAAGAATTTTGATAAATG
CTGCACGAGTAGAATGTCAAAGTCACAAACTCAATGTTGAAGATTCTGTT
ACACTTGAATATTTGACTAGATATATTGCAAGCTTGAAACAAAAATATAC
ACAGAGTAATGGTATGAGACCTTTTGGAATCTCAATGCTTATTGTTGGTT
TTGATGATGACGGCACCTCTCATTTATATCAAACAGATCCTTCAGGAACC
TATCATGAGTGGAAGGCAAATGCAATTGGTAGAAGCTCAAAAACAGTTCA
AGAATATTTGGAGAAAAATTATGCTGATGATGAGATTGAATCTGACGACT
ACACTATTAAATTAGCGTTGAAAGCATTATTAGAGGTCGTACAAACAGGT
AGTAAGAATATAGAAATGGCAGTCATGGAACGTGGAAAACCAATGAGATT
GCTAGAAACCAATGAGATTGAAGAATATGtcaaacaaattgaaaaagaaa
aagaagaagaggttgaaaagaagaaagctaAAAAACTTGCACGACAACAA
GAACAACAAAAGGAATAAACTTTTCTTTGTGTATAGTTTTTAGTCAAGAT
TTTCGGAATGGGTTATGAGTTGCTTCTCTGATAGTATTCTTTACGCTTTG
GATGTAGATAAAGCTTCCCGAAAGATTTTCAGTGTTCtggtcaaaacaaa
aataattattgcttctgattgaaaaaagttttgcttttgtttactaggga
aaattattatttatttaataatgcttagaaatttcaaacatttttgtatT
ATTATCAAACGAAAGAAAATATGTTCCAAGTTATTCCTCATTAGTTAGAT
TTGGGTCTCCTCAATCGTCAAATTATATTAGTCGAGGTTGCAAGTCTGTC
TTACTCTTAACCCATTAAGTGCCATCACTCTGTTATTTCAAATGCATGTA
CTCACCCC
Run BLAST on NCBI

protein sequence of TCONS_00062204-protein

>TCONS_00062204-protein ID=TCONS_00062204-protein|Name=TCONS_00062204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MSANYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKNIVALGVERK
SVAKLQEPRTVRKICAVDDHVFLAFAGLTADARILINAARVECQSHKLNV
EDSVTLEXADARILINAARVECQSHKLNVEDSVTLEYLTRYIASLKQKYT
QSNGMRPFGISMLIVGFDDDGTSHLYQTDPSGTYHEWKANAIGRSSKTVQ
EYLEKNYADDEIESDDYTIKLALKALLEVVQTGSKNIEMAVMERGKPMRL
LETNEIEEYVKQIEKEKEEEVEKKKAKKLARQQEQQKE
Run BLAST on NCBI

transcript from alignment at scaffold_362:724145..727993+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062204 ID=TCONS_00062204|Name=TCONS_00062204|organism=Clytia hemisphaerica|type=transcript|length=3849bp|location=Sequence derived from alignment at scaffold_362:724145..727993+ (Clytia hemisphaerica)
aggcttttaaatcgaaatatgaaaacaaATCCGTAGTGTGACACGCAAGT
GTCTGGAtagaagaagaacaaattagtggcaaaatgatggagcatttgac
gtcacttgcgcGGCTAGTTACACACTCGCtttttgttaatcccatcgaac
gataggcggttaggcagcgggtgttctctaattctccaattggCGTCCgg
taatgaaaacaaaaaaattaaaaaaggcacgctatcgtgacatgttatga
cagaaagtataactgataaacttggtggagttatcaaaacaaatttgttg
tcaaagagatttaacagtatgTGAAAATACaagccagatatcaacagtct
cATGTTTCgaccaaaaaacatttttcattaaaaacactacatcttgaatt
ttctgactttgacatttgacatCCTAACTGCTTTTTACATTAAGTATGTA
TATATAATCACACTTAATCACAAACTCCATAAAAAAAACTTGGGAAAAtt
cttgaatgaaaaaaaacgcgaaaattaaaacccacgAAATGctatttttc
ggatattttttttcgaccgcaaaaattagttcccacggAAAtgagttcca
ataaggtatacaTTTTTGTAGCCtgtgtatccagactcaaaattttagaa
aaaaactcttacctcatCATACAAAGTTTTAAACTTTTAGAGTCTgatgc
aactaaaaaagtctggtacaatttgaatgacacagtctgtgagtgaaccc
ttgttgacagaatctcaaaactttggaaacccaggcagacacacataatg
acttaccataaaacctcttttacaagcTCAAAAGCCTTTAAACTACATCT
AAAcgtcagccacattcataaaggatcctttccatcagccattttgtttg
gagatgaacctgtgttttcattttcatttgttcatctttttttgcaatgt
cagctttttcTATAAATTATAAGCGCGcatagaaaaatattgaaaacccC
GCGAatattctgctcagtgactgggcgcgtattGGCCAATTAGAtgcact
cgcatatgcagggacaaatATTCCTGCAGAAGAGTTAGTTGGACCAGacc
gtaaaccagagacaaaattataaaaaactagacggtgaaatagtttacgg
tctggatatccaggctaacttTTTTGTTACTCACTTATTCCTGCATTTGc
taaaaatggacaaaaataacgACAAATGACgtataaaaaacgacaaattt
tgcTCTCCATTCAACTCTGACTGACGGTTAGTTTGTCCACCTCTAAAATt
ccattcctctttgtttattgCGAAATTGACAACTTATGGTTTTAAAGAAC
AATAAATTATGCATGCGTGTTATTAATGCAGGACATGTTAGTCCCACTGt
tattatatttcaattttgttttgatgataaaGCTAGTATAGAAGAAAAAT
AATGTCAGCCAATTATGATAGAGCAATTACCATCTTTTCTCCTGATGGTC
ATTTGTTTCAAGTTGAATATGCACAAGAGGCTGTCAAAAAAGGATCAACT
GCTGTTGGTGTAAGagggaaaaatattgttgcacTTGGTGTTGAACGCAA
GTCAGTTGCCAAATTGCAAGAACCTCGTACAGTTAGAAAAATCTGTGCTG
TTGATGATCATGTATTCCTTGCATTTGCAGGTAATAACTACAGGTGATTT
TTGTTAGCACCCAAGTCTGCCCAGATAGACAAGCATTTTTAATTGTTCAG
AAGAATTGAATAAGAATGTTGTgatttcaaataaacaaatagtatttttt
ttaaagaactgtAATCACAAATCACCCTAAAAACCACTCACAACCATATT
ATTGATTGGGCTAGTATCTCTTCATTGCTGACCTCAAATCTTTAacacaa
aattaattttaaggtataatttttgattctgttttttttttcttgcaaaa
tgtttttttaggaTTGACTGCTGATGCAAGAATTTTGATAAACGCTGCAC
GAGTAGAATGTCAAAGTCACAAACTCAATGTTGAAGATTCTGTTACACTT
GAATANGCTGATGCAAGAATTTTGATAAATGCTGCACGAGTAGAATGTCA
AAGTCACAAACTCAATGTTGAAGATTCTGTTACACTTGAATATTTGACTA
GATATATTGCAAGCTTGAAACAAGTAATATTTTGATTGCCTCTTTTAAgg
actttttttaataattaaaACTGATTAAAAAGATATCTTGTTTCTTTAAA
TCTTTATCTCTCGAGTGCTGCTCCTTGCTGAAGTAGATTCTTTCTTGTCT
TAAGACTAACACGATTGTTTCAAAATGGGGCCTTTTCATCTATTCATAGG
AGCCTTTTCTGTTTGAAGTTTTAAAGGGCTTGTACAAATAATAATTACTT
TTATATTGATTCTTTAGAAATATACACAGAGTAATGGTATGAGACCTTTT
GGAATCTCAATGCTTATTGTTGGTTTTGATGATGACGGCACCTCTCATTT
ATATCAAACAGATCCTTCAGGAACCTATCATGAGTGGAAGGTTTGTCAAT
GAAAAGTTGAACTTGTTTTTCCTTtgtaatgaaataaaaaaatattgctg
gGATGCTGAACCCACAAGTAAAAACTAATTGTTATACTTTATTCAAGCTG
ATTTAGTTTAAATTCATCTGTTAGCTTCAAGTAAGGAATAAAGGTTTGTA
ATCAGTCAATCATTCTTTCTTAGAATGTAGAAAATTtttgtgtttctatt
tttcttttaccATTTAAAGTTTATGGACTAGATTTTTATGAGAGTTTATA
GaatcagaaaacaaaatttacttCAGCTTAATTTACTGCAATGCATCTAT
TGCAACTAGATTTACCATGGTTTGTCAAAATACATGAAACAATATGATAT
TCACTAGCAAATTTAATTACCTTACCAGGCAAATGCAATTGGTAGAAGCT
CAAAAACAGTTCAAGAATATTTGGAGAAAAATTATGCTGATGATGAGATT
GAATCTGACGACTACACTATTAAATTAGCGTTGAAAGCATTATTAGAGGT
TTGTTTTTCTGTGTAAATCTGTTTGTATCATCTCTGACAATATCAATTAC
ATCAACATTCATCTTTATCTACAATGATTTAATCAATACATCTACAAAAT
TCTACCAAGAAACACCACTGTATTATGCAAATTTATTTTCGTTGATATCC
TGTGACTTTCTCAATATTTTGAGGTTGATTACATGCATTTTCTTCTTGCA
ACACTCTGTACACTTTGTTTTTCCAGGTCGTACAAACAGGTAGTAAGAAT
ATAGAAATGGCAGTCATGGAACGTGGAAAACCAATGAGATTGCTAGAAAC
CAATGAGATTGAAGAATATGtcaaacaaattgaaaaagaaaaagaagaag
aggttgaaaagaagaaagctaAAAAACTTGCACGACAACAAGAACAACAA
AAGGAATAAACTTTTCTTTGTGTATAGTTTTTAGTCAAGATTTTCGGAAT
GGGTTATGAGTTGCTTCTCTGATAGTATTCTTTACGCTTTGGATGTAGAT
AAAGCTTCCCGAAAGATTTTCAGTGTTCtggtcaaaacaaaaataattat
tgcttctgattgaaaaaagttttgcttttgtttactagggaaaattatta
tttatttaataatgcttagaaatttcaaacatttttgtatTATTATCAAA
CGAAAGAAAATATGTTCCAAGTTATTCCTCATTAGTTAGATTTGGGTCTC
CTCAATCGTCAAATTATATTAGTCGAGGTTGCAAGTCTGTCTTACTCTTA
ACCCATTAAGTGCCATCACTCTGTTATTTCAAATGCATGTACTCACCCC

Coding sequence (CDS) from alignment at scaffold_362:724145..727993+

>TCONS_00062204 ID=TCONS_00062204|Name=TCONS_00062204|organism=Clytia hemisphaerica|type=CDS|length=4335bp|location=Sequence derived from alignment at scaffold_362:724145..727993+ (Clytia hemisphaerica)
ATGTCAGCCAATTATGATAGAGCAATTACCATCTTTTCTCCTGATGGTCA
TTTGTTTCAAGTTGAATATGCACAAGAGGCTGTCAAAAAAGGATCAACTG
CTGTTGGTGTAAGagggaaaaatattgttgcacTTGGTGTTGAACGCAAG
TCAGTTGCCAAATTGCAAGAACCTCGTACAGTTAGAAAAATCTGTGCTGT
TGATGATCATGTATTCCTTGCATTTGCAGgaTTGACTGCTGATGCAAGAA
TTTTGATAAACGCTGCACGAGTAGAATGTCAAAGTCACAAACTCAATGTT
GAAGATTCTGTTACACTTGAATANGCTGATGCAAGAATTTTGATAAATGC
TGCACGAGTAGAATGTCAAAGTCACAAACTCAATGTTGAAGATTCTGTTA
CACTTGAATATTTGACTAGATATATTGCAAGCTTGAAACAAAAATATACA
CAGAGTAATGGTATGAGACCTTTTGGAATCTCAATGCTTATTGTTGGTTT
TGATGATGACGGCACCTCTCATTTATATCAAACAGATCCTTCAGGAACCT
ATCATGAGTGGAAGGCAAATGCAATTGGTAGAAGCTCAAAAACAGTTCAA
GAATATTTGGAGAAAAATTATGCTGATGATGAGATTGAATCTGACGACTA
CACTATTAAATTAGCGTTGAAAGCATTATTAGAGGTCGTACAAACAGGTA
GTAAGAATATAGAAATGGCAGTCATGGAACGTGGAAAACCAATGAGATTG
CTAGAAACCAATGAGATTGAAGAATATGtcaaacaaattgaaaaagaaaa
agaagaagaggttgaaaagaagaaagctaAAAAACTTGCACGACAACAAG
AACAACAAAAGGAATAAATGTCAGCCAATTATGATAGAGCAATTACCATC
TTTTCTCCTGATGGTCATTTGTTTCAAGTTGAATATGCACAAGAGGCTGT
CAAAAAAGGATCAACTGCTGTTGGTGTAAGagggaaaaatattgttgcac
TTGGTGTTGAACGCAAGTCAGTTGCCAAATTGCAAGAACCTCGTACAGTT
AGAAAAATCTGTGCTGTTGATGATCATGTATTCCTTGCATTTGCAGgaTT
GACTGCTGATGCAAGAATTTTGATAAACGCTGCACGAGTAGAATGTCAAA
GTCACAAACTCAATGTTGAAGATTCTGTTACACTTGAATANGCTGATGCA
AGAATTTTGATAAATGCTGCACGAGTAGAATGTCAAAGTCACAAACTCAA
TGTTGAAGATTCTGTTACACTTGAATATTTGACTAGATATATTGCAAGCT
TGAAACAAAAATATACACAGAGTAATGGTATGAGACCTTTTGGAATCTCA
ATGCTTATTGTTGGTTTTGATGATGACGGCACCTCTCATTTATATCAAAC
AGATCCTTCAGGAACCTATCATGAGTGGAAGGCAAATGCAATTGGTAGAA
GCTCAAAAACAGTTCAAGAATATTTGGAGAAAAATTATGCTGATGATGAG
ATTGAATCTGACGACTACACTATTAAATTAGCGTTGAAAGCATTATTAGA
GGTCGTACAAACAGGTAGTAAGAATATAGAAATGGCAGTCATGGAACGTG
GAAAACCAATGAGATTGCTAGAAACCAATGAGATTGAAGAATATGtcaaa
caaattgaaaaagaaaaagaagaagaggttgaaaagaagaaagctaAAAA
ACTTGCACGACAACAAGAACAACAAAAGGAATAAATGTCAGCCAATTATG
ATAGAGCAATTACCATCTTTTCTCCTGATGGTCATTTGTTTCAAGTTGAA
TATGCACAAGAGGCTGTCAAAAAAGGATCAACTGCTGTTGGTGTAAGagg
gaaaaatattgttgcacTTGGTGTTGAACGCAAGTCAGTTGCCAAATTGC
AAGAACCTCGTACAGTTAGAAAAATCTGTGCTGTTGATGATCATGTATTC
CTTGCATTTGCAGgaTTGACTGCTGATGCAAGAATTTTGATAAACGCTGC
ACGAGTAGAATGTCAAAGTCACAAACTCAATGTTGAAGATTCTGTTACAC
TTGAATANGCTGATGCAAGAATTTTGATAAATGCTGCACGAGTAGAATGT
CAAAGTCACAAACTCAATGTTGAAGATTCTGTTACACTTGAATATTTGAC
TAGATATATTGCAAGCTTGAAACAAAAATATACACAGAGTAATGGTATGA
GACCTTTTGGAATCTCAATGCTTATTGTTGGTTTTGATGATGACGGCACC
TCTCATTTATATCAAACAGATCCTTCAGGAACCTATCATGAGTGGAAGGC
AAATGCAATTGGTAGAAGCTCAAAAACAGTTCAAGAATATTTGGAGAAAA
ATTATGCTGATGATGAGATTGAATCTGACGACTACACTATTAAATTAGCG
TTGAAAGCATTATTAGAGGTCGTACAAACAGGTAGTAAGAATATAGAAAT
GGCAGTCATGGAACGTGGAAAACCAATGAGATTGCTAGAAACCAATGAGA
TTGAAGAATATGtcaaacaaattgaaaaagaaaaagaagaagaggttgaa
aagaagaaagctaAAAAACTTGCACGACAACAAGAACAACAAAAGGAATA
AATGTCAGCCAATTATGATAGAGCAATTACCATCTTTTCTCCTGATGGTC
ATTTGTTTCAAGTTGAATATGCACAAGAGGCTGTCAAAAAAGGATCAACT
GCTGTTGGTGTAAGagggaaaaatattgttgcacTTGGTGTTGAACGCAA
GTCAGTTGCCAAATTGCAAGAACCTCGTACAGTTAGAAAAATCTGTGCTG
TTGATGATCATGTATTCCTTGCATTTGCAGgaTTGACTGCTGATGCAAGA
ATTTTGATAAACGCTGCACGAGTAGAATGTCAAAGTCACAAACTCAATGT
TGAAGATTCTGTTACACTTGAATANGCTGATGCAAGAATTTTGATAAATG
CTGCACGAGTAGAATGTCAAAGTCACAAACTCAATGTTGAAGATTCTGTT
ACACTTGAATATTTGACTAGATATATTGCAAGCTTGAAACAAAAATATAC
ACAGAGTAATGGTATGAGACCTTTTGGAATCTCAATGCTTATTGTTGGTT
TTGATGATGACGGCACCTCTCATTTATATCAAACAGATCCTTCAGGAACC
TATCATGAGTGGAAGGCAAATGCAATTGGTAGAAGCTCAAAAACAGTTCA
AGAATATTTGGAGAAAAATTATGCTGATGATGAGATTGAATCTGACGACT
ACACTATTAAATTAGCGTTGAAAGCATTATTAGAGGTCGTACAAACAGGT
AGTAAGAATATAGAAATGGCAGTCATGGAACGTGGAAAACCAATGAGATT
GCTAGAAACCAATGAGATTGAAGAATATGtcaaacaaattgaaaaagaaa
aagaagaagaggttgaaaagaagaaagctaAAAAACTTGCACGACAACAA
GAACAACAAAAGGAATAAATGTCAGCCAATTATGATAGAGCAATTACCAT
CTTTTCTCCTGATGGTCATTTGTTTCAAGTTGAATATGCACAAGAGGCTG
TCAAAAAAGGATCAACTGCTGTTGGTGTAAGagggaaaaatattgttgca
cTTGGTGTTGAACGCAAGTCAGTTGCCAAATTGCAAGAACCTCGTACAGT
TAGAAAAATCTGTGCTGTTGATGATCATGTATTCCTTGCATTTGCAGgaT
TGACTGCTGATGCAAGAATTTTGATAAACGCTGCACGAGTAGAATGTCAA
AGTCACAAACTCAATGTTGAAGATTCTGTTACACTTGAATANGCTGATGC
AAGAATTTTGATAAATGCTGCACGAGTAGAATGTCAAAGTCACAAACTCA
ATGTTGAAGATTCTGTTACACTTGAATATTTGACTAGATATATTGCAAGC
TTGAAACAAAAATATACACAGAGTAATGGTATGAGACCTTTTGGAATCTC
AATGCTTATTGTTGGTTTTGATGATGACGGCACCTCTCATTTATATCAAA
CAGATCCTTCAGGAACCTATCATGAGTGGAAGGCAAATGCAATTGGTAGA
AGCTCAAAAACAGTTCAAGAATATTTGGAGAAAAATTATGCTGATGATGA
GATTGAATCTGACGACTACACTATTAAATTAGCGTTGAAAGCATTATTAG
AGGTCGTACAAACAGGTAGTAAGAATATAGAAATGGCAGTCATGGAACGT
GGAAAACCAATGAGATTGCTAGAAACCAATGAGATTGAAGAATATGtcaa
acaaattgaaaaagaaaaagaagaagaggttgaaaagaagaaagctaAAA
AACTTGCACGACAACAAGAACAACAAAAGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038998XLOC_038998Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062204-exon-scaffold_362-1491911889:724145..725824TCONS_00062204-exon-scaffold_362-1491911889:724145..725824Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1510915933:724145..725824TCONS_00062204-exon-scaffold_362-1510915933:724145..725824Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1575043694:724145..725824TCONS_00062204-exon-scaffold_362-1575043694:724145..725824Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1491911889:726106..726317TCONS_00062204-exon-scaffold_362-1491911889:726106..726317Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1510915933:726106..726317TCONS_00062204-exon-scaffold_362-1510915933:726106..726317Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1575043694:726106..726317TCONS_00062204-exon-scaffold_362-1575043694:726106..726317Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1491911889:726562..726684TCONS_00062204-exon-scaffold_362-1491911889:726562..726684Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1510915933:726562..726684TCONS_00062204-exon-scaffold_362-1510915933:726562..726684Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1575043694:726562..726684TCONS_00062204-exon-scaffold_362-1575043694:726562..726684Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1491911889:727073..727192TCONS_00062204-exon-scaffold_362-1491911889:727073..727192Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1510915933:727073..727192TCONS_00062204-exon-scaffold_362-1510915933:727073..727192Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1575043694:727073..727192TCONS_00062204-exon-scaffold_362-1575043694:727073..727192Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1491911889:727421..727993TCONS_00062204-exon-scaffold_362-1491911889:727421..727993Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1510915933:727421..727993TCONS_00062204-exon-scaffold_362-1510915933:727421..727993Clytia hemisphaericaexon
TCONS_00062204-exon-scaffold_362-1575043694:727421..727993TCONS_00062204-exon-scaffold_362-1575043694:727421..727993Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062204-proteinTCONS_00062204-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:724145..727993 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
114.194	113.185	110.993	104.869	65.1641	47.5439	71.9786	74.7998	96.086	79.6734	69.9185	69.9441	53.5859	49.7365	66.1457	69.0841	66.3792	77.027	25.0513	33.9239	72.4479	68.5257	68.2339	63.8656	76.2571	79.7103	82.7837	64.2292	56.1205	47.641
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000426Proteasome_asu_N
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
IPR023332Proteasome_alpha-type
Vocabulary: Cellular Component
TermDefinition
GO:0019773proteasome core complex, alpha-subunit complex
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
molecular_function GO:0004175 endopeptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00062204 vs. Swiss-Prot (Human)
Match: PSA7L (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=2 SV=3)

HSP 1 Score: 358.607 bits (919), Expect = 3.886e-116
Identity = 173/251 (68.92%), Postives = 200/251 (79.68%), Query Frame = 3 
Query: 1452 MSANYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKNIVALGVERKSVAKLQEPRTVRKICAVDDHVFLAFAGLTADARILINAARVECQSHKLNVEDSVTLEXADARILINAARVECQSHKLNVEDSVTLEYLTRYIASLKQKYTQSNGMRPFGISMLIVGFDDDGTSHLYQTDPSGTYHEWKANAIGRSSKTVQEYLEKNYADDEIESDDYTIKLALKALLEVVQTGSKNIEMAVMERGKPMRLL 2204
            M++ YDRAIT+FSPDGHLFQVEYAQEAVKKGSTAVG+RG NIV LGVE+KSVAKLQ+ RTVRKICA+DDHV +AFA LT    I I                      ADAR++IN ARVECQSHKL VED VT+EY+TR+IA+LKQKYTQSNG RPFGIS LIVGFDDDG S LYQTDPSGTYH WKANAIGRS+KTV+E+LEKNY +D I SD   IKLA+KALLEVVQ+G KNIE+A++ R +P+++ 
Sbjct:    1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLT----IFIGLT-------------------ADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMF 228
The following BLAST results are available for this feature:
BLAST of TCONS_00062204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSA7L3.886e-11668.92Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
back to top