TCONS_00062182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062182
Unique NameTCONS_00062182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062182 ID=TCONS_00062182|Name=TCONS_00062182|organism=Clytia hemisphaerica|type=transcript|length=703bp
CTGTGGTTAAGGGCGGGAAATTTTAATCAGCGGGTGCATTTTTCTAGACT
AGTAGTTAGTAGCAAATTTCTTGCAAATCCACAGTCTAGAGCTCCAGTGG
ACAAGAATCAAGATGGCGGTCAATCCACTTGCTTTGAGCAAACAGTTAAC
CCATCATCAAAGGGTTACTAGACTCTATAGAAAGTCATTGAAACATTTAC
TATCATGGACAATGAACAGAGAAGCTTGGAGAGAGCAGGCAGTCCTTTTA
CGCGAAAAGTTTGATGAAAACAAATCATTAACAGACAAGTTCCAGATTGA
AAAAGTTGTCAAGGATGCAGAAGCCCAATTTGAATTGTGGCGTCACCCAG
CTCCATACATCCATCCAAAAGCACCAGGAGGCTCAAAATACGAAAGGAAT
GTTCCACCTCCACCAAACGCTTTAGAAATGCTACCCATGGAAGAAGAATG
GTATAAAGAAATGATGGACTGGGCTGATGGAAAAAATTAGCTccattaaa
atgttttaattttcaattttttctgtattatagagatttaattttttttg
attttgcatCAACAGACAGTTAATaacacaaaacattttttgtttatttt
gaccTGTTAGCCACAAcctataaaaaaagttaaatttctcTGAAATTGTC
TACCTGATCGTGGATGTGGCAAGCCACTTCGAATTTTTCAAGTTCAATTA
TAA
Run BLAST on NCBI

protein sequence of TCONS_00062182-protein

>TCONS_00062182-protein ID=TCONS_00062182-protein|Name=TCONS_00062182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MAVNPLALSKQLTHHQRVTRLYRKSLKHLLSWTMNREAWREQAVLLREKF
DENKSLTDKFQIEKVVKDAEAQFELWRHPAPYIHPKAPGGSKYERNVPPP
PNALEMLPMEEEWYKEMMDWADGKN
Run BLAST on NCBI

transcript from alignment at scaffold_362:384303..387446+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062182 ID=TCONS_00062182|Name=TCONS_00062182|organism=Clytia hemisphaerica|type=transcript|length=3144bp|location=Sequence derived from alignment at scaffold_362:384303..387446+ (Clytia hemisphaerica)
CTGTGGTTAAGGGCGGGAAATTTTAATCAGCGGGTGCATTTTTCTAGACT
AGTAGTTAGTAGCAAATTTCTTGCAAATCCACAGTCTAGAGCTCCAGTGG
ACAAGAATCAAGATGGCGGTCAATCCACTTGCTTTGAGCAAACAGTTAAC
CCATCATCAAAGGGTTACTAGACTCTATAGAAAGTCATTGAAACATTTAC
TATCATGGACAATGAACAGAGAAGCTTGGAGAGAGCAGGCAGTCCTTTTA
CGCGAAAAGTTTGATGAAAACAAATCATTAACAGACAAGTTCCAGATTGA
AAAAGTTGTCAAGGATGCAGAAGCCCAATTTGAATTGTGGCGTCACCCAG
CTCCATACATCCGTAAGATTTGTTTTGATacagtttttaattatttagaC
CTAGCATCTAATAACTAAATACTTCAAACTAGTCGTTTATAGAAGATCAG
GATCTAGCCCCCCAGGGTCAGCGGTTGcgggttggcaaacgatatcatac
tccaggatgcattgTCTCTTATTTTCcacctattttctactttcctatct
tctatcctgattttctgtctttctcaagtgtttctaactgttttctaagt
atatttctgaaatttgcctgtACCgacccggctcgaaccaccaaaaatgc
aagcaaccttggtttacaaacccaatgcctaaaCGCTTGCGCCAATGAGA
CACGACAGaaagctgtcattcacaaatatttatagcgtgtaatttacaga
ccttaaataagaaagctcccaaccctctaccggtgcccctacaaggatcc
ctaccagttacatcaatatgccttcttacctgtctttaaaaatataaata
aaagtaatcacaggaaaggacgcgaaaaaaaaagacataaNgaaagggta
attatattttatggttcgcttctttttttaaagattcgccgggttggaaa
agtatgaaattctttgtacatattttacctaccctaaatatttaggaggc
tgagttttaaacgaattgtcaagttgaaacgaacgataaatgtatcaagg
tctgttttatttacccccggGTGagttaacaaaagagacttaactcgatg
ttacaatccaattattgaaagtttgtctcggcctttttataatgagcgag
atatatgttctctgattacgcaattttcatattgacattttcgaggcatt
ttgatgtaactgcctacGGGATCCAAAGTTAAGTCTCAGGGTACGAATGC
CTCTAAGAAGGCCTTcagccttatattgtgactcttgagctccaacccta
accttaactgataataaccaaaccCCAGTCTAGGTccgcggattgaaaaa
tttcacttgcatcctggagtatgatattgTTTGCCAACCTCCAGGGTCAG
TCTATCTGGCTGGGGGAAATCCTCTTAATTGTGCGCTTAATTTCCAAGGC
CGTAATCGTGCAATGCACATATAAATTTACACTTGGTGCAATTGCATTCT
TAAAATTCTCCCACGGTTGAGATTGCTTGAGCCACTTGTTTTGGTTTGTT
ACAACACCAAGCTACATTATTCCCAAGAgcaattaaaaattacaaatttt
tttcttttactttgtttGGAACATGTTATTTGATCAAAACAATTAAACGT
TGAATTCTTGTTTGAACAGGGAATATATTAAAATCTGATTTGATGCAATA
AAATTCAGTCTGGAAAGGTGGAAAATGTTGCGTGGGAGGCGTTTTTTTGC
CGTAGCTAAAAGCTGCACCAAAAGTTAATAGGGAACTGCCGCCAAAGGCA
GCCCAAGCTCGTTGCAGCCGCAAAAATTTTTGAGGAGGCTTGTGACTGGC
tttgaaagtgattttttaTGCTTAACAACTTGATATAACCTGTGTGAAAT
AAACAATTTCAATAGCATGGGGTATTCTTTGTTTTAAAGTGCACATTAGT
AAGAGTAAATCTGGCAACAGCTACTCTGCGCCAGCTCCTCTGCGTCAATC
CGCCAAGACCAATCTCAAGTCTGCGCCGGATATCTCCGGCGCACATGCCG
CAATTTCTAGACTGGAATAAAATAGAATCATCTAATCATCCAGACCTTTT
GTTACATAATTTATAAttgttatttgttttgtttatgtgtTCATTGTTCT
GCAGAGAAGAGCCATAGAGAAAAGTTGTTAAAAGAACAAttatttttcgg
attttttcccgcttcttcTCTGCATTGGAAAATCGGTGGAAAATATGATG
AACAGAACCATTTTTAATAGTCCTTTAGCTTAGGGGAAGGCACTACCATT
TTGATTAACGTCTACTCCAgctgttttttcttatttttactcCTGACAAA
TTTTGTTGTAACGTTGGAAATCGATGGACAAAAGAGCCGAATTATTCTTT
ATTTGAAATTAGAGCTATCGAAATGATGTGTTGATTatctttgataattt
ttatGTTATGTTTCAGATCCAAAAGCACCAGGAGGCTCAAAATACGAAAG
GAATGTTCCACCTCCACCAAACgtacgattttttttttatttctacaaat
tcCTAACTGCTAAACCAATtcagtcgccaaaattttacATCCAAATATTC
TTTGAAATTCCAACTTTCGAtgaagagttttagaaaatttgattatttta
tgtcattttttaaGTTTCAACAAATTATCTGCTAATTGCAATTTTTCTTG
ATCGAAATGACTTTACTTGACCTTAAAATTCTGAATTTCTGTCCAACCAT
TTGCCTGAATTCTACCATTCAGACTAAAAATCGATCAAACCAACCTCTCT
TACATCACATATGAAATGTAGTGGGCGCTTGGTGAATGGATTTTTCTGTA
TATTTCCAGGCTTTAGAAATGCTACCCATGGAAGAAGAATGGTATAAAGA
AATGATGGACTGGGCTGATGGAAAAAATTAGCTccattaaaatgttttaa
ttttcaattttttctgtattatagagatttaattttttttgattttgcat
CAACAGACAGTTAATaacacaaaacattttttgtttattttgaccTGTTA
GCCACAAcctataaaaaaagttaaatttctcTGAAATTGTCTACCTGATC
GTGGATGTGGCAAGCCACTTCGAATTTTTCAAGTTCAATTATAA

Coding sequence (CDS) from alignment at scaffold_362:384303..387446+

>TCONS_00062182 ID=TCONS_00062182|Name=TCONS_00062182|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_362:384303..387446+ (Clytia hemisphaerica)
ATGGCGGTCAATCCACTTGCTTTGAGCAAACAGTTAACCCATCATCAAAG
GGTTACTAGACTCTATAGAAAGTCATTGAAACATTTACTATCATGGACAA
TGAACAGAGAAGCTTGGAGAGAGCAGGCAGTCCTTTTACGCGAAAAGTTT
GATGAAAACAAATCATTAACAGACAAGTTCCAGATTGAAAAAGTTGTCAA
GGATGCAGAAGCCCAATTTGAATTGTGGCGTCACCCAGCTCCATACATCC
ATCCAAAAGCACCAGGAGGCTCAAAATACGAAAGGAATGTTCCACCTCCA
CCAAACGCTTTAGAAATGCTACCCATGGAAGAAGAATGGTATAAAGAAAT
GATGGACTGGGCTGATGGAAAAAATTAGATGGCGGTCAATCCACTTGCTT
TGAGCAAACAGTTAACCCATCATCAAAGGGTTACTAGACTCTATAGAAAG
TCATTGAAACATTTACTATCATGGACAATGAACAGAGAAGCTTGGAGAGA
GCAGGCAGTCCTTTTACGCGAAAAGTTTGATGAAAACAAATCATTAACAG
ACAAGTTCCAGATTGAAAAAGTTGTCAAGGATGCAGAAGCCCAATTTGAA
TTGTGGCGTCACCCAGCTCCATACATCCATCCAAAAGCACCAGGAGGCTC
AAAATACGAAAGGAATGTTCCACCTCCACCAAACGCTTTAGAAATGCTAC
CCATGGAAGAAGAATGGTATAAAGAAATGATGGACTGGGCTGATGGAAAA
AATTAGATGGCGGTCAATCCACTTGCTTTGAGCAAACAGTTAACCCATCA
TCAAAGGGTTACTAGACTCTATAGAAAGTCATTGAAACATTTACTATCAT
GGACAATGAACAGAGAAGCTTGGAGAGAGCAGGCAGTCCTTTTACGCGAA
AAGTTTGATGAAAACAAATCATTAACAGACAAGTTCCAGATTGAAAAAGT
TGTCAAGGATGCAGAAGCCCAATTTGAATTGTGGCGTCACCCAGCTCCAT
ACATCCATCCAAAAGCACCAGGAGGCTCAAAATACGAAAGGAATGTTCCA
CCTCCACCAAACGCTTTAGAAATGCTACCCATGGAAGAAGAATGGTATAA
AGAAATGATGGACTGGGCTGATGGAAAAAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038988XLOC_038988Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062182-proteinTCONS_00062182-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062182-exon-scaffold_362-1491911889:384303..384664TCONS_00062182-exon-scaffold_362-1491911889:384303..384664Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1510915933:384303..384664TCONS_00062182-exon-scaffold_362-1510915933:384303..384664Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1575043694:384303..384664TCONS_00062182-exon-scaffold_362-1575043694:384303..384664Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1491911889:386769..386824TCONS_00062182-exon-scaffold_362-1491911889:386769..386824Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1510915933:386769..386824TCONS_00062182-exon-scaffold_362-1510915933:386769..386824Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1575043694:386769..386824TCONS_00062182-exon-scaffold_362-1575043694:386769..386824Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1491911889:387162..387446TCONS_00062182-exon-scaffold_362-1491911889:387162..387446Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1510915933:387162..387446TCONS_00062182-exon-scaffold_362-1510915933:387162..387446Clytia hemisphaericaexon
TCONS_00062182-exon-scaffold_362-1575043694:387162..387446TCONS_00062182-exon-scaffold_362-1575043694:387162..387446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:384303..387446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
173.893	173.435	104.807	104.817	112.635	86.1198	143.131	143.317	140.246	123.796	123.861	127.21	109.243	120.015	111.995	115.849	230.97	224.828	80.8476	76.3498	176.631	163.118	142.18	137.637	210.8	192.441	135.861	115.027	102.446	90.9192
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Blast
[Close]
BLAST of TCONS_00062182 vs. Swiss-Prot (Human)
Match: NDUB9 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.661e-20
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  128 LALSKQLTHHQRVTRLYRKSLKHLLSWTMNREAWREQAVLLREKFDENKSLTDKFQIEKVVKDAEAQFELWRHPAPYIHPKAPGGSKYER 397
            LA    LTH Q+V RLY+++L+HL SW + R+ +R  A L+R +F+E+K+  D  +  +++K+AE +F   +HP PYI P +PGG+ YER
Sbjct:    4 LASGPYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93
The following BLAST results are available for this feature:
BLAST of TCONS_00062182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUB92.661e-2044.44NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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