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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062081 ID=TCONS_00062081|Name=TCONS_00062081|organism=Clytia hemisphaerica|type=transcript|length=4392bpRun BLAST on NCBI protein sequence of TCONS_00062081-protein >TCONS_00062081-protein ID=TCONS_00062081-protein|Name=TCONS_00062081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp MADWNEYFSKTRPPSNLDEAKRTIQDFAVKHHQIGRNIVLVTSGGTTVPVRun BLAST on NCBI transcript from alignment at scaffold_361:1694618..1708623- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062081 ID=TCONS_00062081|Name=TCONS_00062081|organism=Clytia hemisphaerica|type=transcript|length=14006bp|location=Sequence derived from alignment at scaffold_361:1694618..1708623- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1694618..1708623- >TCONS_00062081 ID=TCONS_00062081|Name=TCONS_00062081|organism=Clytia hemisphaerica|type=CDS|length=29520bp|location=Sequence derived from alignment at scaffold_361:1694618..1708623- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062081 vs. Swiss-Prot (Human)
Match: PPCS (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2) HSP 1 Score: 282.337 bits (721), Expect = 6.914e-85 Identity = 145/308 (47.08%), Postives = 197/308 (63.96%), Query Frame = 1
Query: 1528 MADWNEYFSKTRPPSNLDEAKRTIQDFAVKHHQIGRNIVLVTSGGTTVPVESNTVRFVDNFSQGTRGAASAEYFLLHGYAVIFLHRQRSFEPFCRHFEGHNALDLLELQLDT-SGAYRLTVDETRAPGLQDVVRRYKEVQNGCLLLKIGFMTLSDYLFLLRASSEALSPLGRNVMFYLAAAVSDFYIPDNEMAEHKIQSSDKNFVLNMSPTPKMLSPLVREWAKNAFVVSFKLETDMNIITKKAREALQKYNHQVVIANILQTRKKTVILITPEDEIPIWMSDQELDYGKEIEEKIVGELFRRHSSMI 2448
MA+ + +PP A+ + FA + GR +VLVTSGGT VP+E+ VRF+DNFS G RGA SAE FL GY V+FL+R RS P+ F L L SG L +E PG + +R Y+E L + F TL+DYL LL+A+++AL+PLG + MFYLAAAVSDFY+P +EM EHKIQSS + M PK+LSPLV++WA AF++SFKLETD I+ +AR+AL+ Y HQVV+ANIL++R+ V ++T + E + +S++E++ G EIEEKIV L RH++ I
Sbjct: 1 MAEMDPVAEFPQPPGAARWAE-VMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI 307 The following BLAST results are available for this feature:
BLAST of TCONS_00062081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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