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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00062081-protein ID=TCONS_00062081-protein|Name=TCONS_00062081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=819bp
MADWNEYFSKTRPPSNLDEAKRTIQDFAVKHHQIGRNIVLVTSGGTTVPV
ESNTVRFVDNFSQGTRGAASAEYFLLHGYAVIFLHRQRSFEPFCRHFEGH
NALDLLELQLDTSGAYRLTVDETRAPGLQDVVRRYKEVQNGCLLLKIGFM
TLSDYLFLLRASSEALSPLGRNVMFYLAAAVSDFYIPDNEMAEHKIQSSD
KNFVLNMSPTPKMLSPLVREWAKNAFVVSFKLETDMNIITKKAREALQKY
NHQVVIANILQTRKKTVILITPEDEIPIWMSDQELDYGKEIEEKIVGELF
RRHSSMISGQAGSGQVSTPVVNSNISFSSGQPQYQSQTSINASNTSTSSH
QSSMPGLAPINVYPSSNPAKLQNVLLHLKSTNDAEMSSHHSNEMLGATNA
SILKRSVSAKEDSGGLTQEMQEFIREFKTRRVNLGYTQDDVGRELSALNG
PTYSQSFISRFEGKQLGMKAAERMRPILDTWIQSKEVDVATGGGNKFQKK
RRKRTSFSPEYIQVLNDYFQKNAKPTPEEMQMIANKINMDLTTVKVWFCN
KKQSLKRVGQPSPFHASAAKSPKSESTQQDRNKVMKRLKSSDSPGGLFAL
NTPAGMKTLIPVSTPTGTVTMPFFISQDGNPIPIVSGANLNNGTNSGVGQ
TPGQQISSTLPQQIVHLSQVPILTSMVVNNTLQNNGTTDNPGATQIISGG
RIIPSGSVLQLPGGAIASQQALQQSNLNQASQNTLNDPNVLMGSDGNNSL
QTRTSVPMGAPVNANTPGRNNENMLLNKDPMKQISEKDLESDEVCVADES
MNKNEKLVQRNPMGVPENT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013847 | POU domain | PRINTS | PR00028 | POUDOMAIN | coord: 499..519
score: 37.8
coord: 431..448
score: 54.63
coord: 454..467
score: 56.55
coord: 534..549
score: 41.28
coord: 470..485
score: 21.35 |
| IPR001356 | Homeobox domain | SMART | SM00389 | HOX_1 | coord: 500..562
e-value: 7.6E-21
score: 85.3 |
| IPR001356 | Homeobox domain | PFAM | PF00046 | Homeobox | coord: 501..557
e-value: 6.6E-17
score: 61.0 |
| IPR001356 | Homeobox domain | PROSITE | PS50071 | HOMEOBOX_2 | coord: 498..558
score: 16.584 |
| IPR000327 | POU-specific domain | SMART | SM00352 | pou | coord: 412..486
e-value: 7.6E-20
score: 81.9 |
| IPR000327 | POU-specific domain | PFAM | PF00157 | Pou | coord: 418..485
e-value: 3.8E-21
score: 74.8 |
| IPR000327 | POU-specific domain | PROSITE | PS51179 | POU_3 | coord: 412..486
score: 26.63 |
| IPR007085 | DNA/pantothenate metabolism flavoprotein, C-terminal | PFAM | PF04127 | DFP | coord: 173..264
e-value: 1.2E-11
score: 44.7 |
| IPR007085 | DNA/pantothenate metabolism flavoprotein, C-terminal | GENE3D | 3.40.50.10300 | | coord: 19..311
e-value: 7.2E-101
score: 336.6 |
| IPR007085 | DNA/pantothenate metabolism flavoprotein, C-terminal | SUPERFAMILY | 102645 | CoaB-like | coord: 23..306 |
| None | No IPR available | GENE3D | 1.10.260.40 | | coord: 416..495
e-value: 7.9E-23
score: 79.9 |
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 497..561
e-value: 2.0E-17
score: 62.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 322..361 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 798..819 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 558..597 |
| None | No IPR available | CDD | cd00086 | homeodomain | coord: 501..557
e-value: 6.45906E-17
score: 75.7428 |
| IPR017970 | Homeobox, conserved site | PROSITE | PS00027 | HOMEOBOX_1 | coord: 533..556 |
| IPR009057 | Homeobox domain-like | SUPERFAMILY | 46689 | Homeodomain-like | coord: 494..560 |
| IPR010982 | Lambda repressor-like, DNA-binding domain | SUPERFAMILY | 47413 | lambda repressor-like DNA-binding domains | coord: 416..485 |
Blast
BLAST of TCONS_00062081-protein vs. Swiss-Prot (Human)
Match: PPCS (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2) HSP 1 Score: 281.567 bits (719), Expect = 3.057e-88 Identity = 145/308 (47.08%), Postives = 197/308 (63.96%), Query Frame = 0
Query: 1 MADWNEYFSKTRPPSNLDEAKRTIQDFAVKHHQIGRNIVLVTSGGTTVPVESNTVRFVDNFSQGTRGAASAEYFLLHGYAVIFLHRQRSFEPFCRHFEGHNALDLLELQLDT-SGAYRLTVDETRAPGLQDVVRRYKEVQNGCLLLKIGFMTLSDYLFLLRASSEALSPLGRNVMFYLAAAVSDFYIPDNEMAEHKIQSSDKNFVLNMSPTPKMLSPLVREWAKNAFVVSFKLETDMNIITKKAREALQKYNHQVVIANILQTRKKTVILITPEDEIPIWMSDQELDYGKEIEEKIVGELFRRHSSMI 307
MA+ + +PP A+ + FA + GR +VLVTSGGT VP+E+ VRF+DNFS G RGA SAE FL GY V+FL+R RS P+ F L L SG L +E PG + +R Y+E L + F TL+DYL LL+A+++AL+PLG + MFYLAAAVSDFY+P +EM EHKIQSS + M PK+LSPLV++WA AF++SFKLETD I+ +AR+AL+ Y HQVV+ANIL++R+ V ++T + E + +S++E++ G EIEEKIV L RH++ I
Sbjct: 1 MAEMDPVAEFPQPPGAARWAE-VMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFI 307
The following BLAST results are available for this feature:
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