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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061951 ID=TCONS_00061951|Name=TCONS_00061951|organism=Clytia hemisphaerica|type=transcript|length=3721bpRun BLAST on NCBI protein sequence of TCONS_00061951-protein >TCONS_00061951-protein ID=TCONS_00061951-protein|Name=TCONS_00061951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=682bp ADDEDDEAFDPSLDDIPADLRSLNINTNDENYPSPPPDSLPSLSFEISPRRun BLAST on NCBI transcript from alignment at scaffold_361:1646079..1660781+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061951 ID=TCONS_00061951|Name=TCONS_00061951|organism=Clytia hemisphaerica|type=transcript|length=14703bp|location=Sequence derived from alignment at scaffold_361:1646079..1660781+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1646079..1660781+ >TCONS_00061951 ID=TCONS_00061951|Name=TCONS_00061951|organism=Clytia hemisphaerica|type=CDS|length=32784bp|location=Sequence derived from alignment at scaffold_361:1646079..1660781+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061951 vs. Swiss-Prot (Human)
Match: RHG27 (Rho GTPase-activating protein 27 OS=Homo sapiens GN=ARHGAP27 PE=1 SV=3) HSP 1 Score: 205.297 bits (521), Expect = 3.704e-54 Identity = 148/418 (35.41%), Postives = 220/418 (52.63%), Query Frame = 1
Query: 808 KQIKKPIWTPIYICKYDSNLVFYKDQKTASP----KPG-FPTGKPESSLDLHGATLDHISKEKVKGKKYVFQIASYGGQNVHQFVADNQLEMGEWIVCIQATIHKXXXXXXXXXXXXXXXISNGGGGERLAS--PTSTIAPPNDLSPPPSTSSNKAASPMMPXXXXXXXXXXXXXXXXXRRLSKRVTGGTDEEXXXXXXXXXXXXYLSKRPSFNELESKGIIADFVFGYPLEKLCEREDNLVPRFIVQIVHEVEKRGLDVDGIYRVSGNLSSVNKLRGLIDNGEMPDYSQPEWNDIHLLTGCLKLYFRXXXXXXXXFHLFDRFVGAMKSPFKPEKLKLMREVVSELKAERKETLNLLLTHFNRVMSMSSKNRMHSQNIAIVFGPTLMWPETDSINVAMTTVFQNQVIEFLVQEWNDVY 2040
K+++K W+ + L F+KD KT++ +P F T PE +++L GATL K+K +K V ++ S G + D++ + W I I +L E P + G ERL S A PN AA+P + G E D ++++ KL+K+L +RP+ L KG I D VFG L LCERE + VPRF+ Q + VE RGLD+DG+YR+SGNL+++ KLR +D+ E D W D+H++TG LKL+FRELPEPL PF F +F+ A+K + + + +R++V L A +TL +L H RV+ +NRM Q++AIVFGPTL+ PE + ++ MT VFQNQV+E ++Q+ D++
Sbjct: 513 KRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST--PEYTVELRGATLSWAPKDK-SSRKNVLELRSRDGSE-YLIQHDSEAIISTWHKAIAQGIQELSAELPPEESESSRV--DFGSSERLGSWQEKEEDARPN------------AAAPAL--------------------------GPVGLESDLSKVRHKLRKFLQRRPTLQSLREKGYIKDQVFGCALAALCERERSRVPRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPEVEETSMPMTMVFQNQVVELILQQCADIF 886 The following BLAST results are available for this feature:
BLAST of TCONS_00061951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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